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Mouse SNP Summary
Symbol
Name
ID 		Rr575160
regulatory region 575160
MGI:8037292

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253649024
MGI SNP Detail		 Chr3:34672450 Gm42205 within coordinates of
Rr575160 1896 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48986278
MGI SNP Detail		 Chr3:34672460 Gm42205 within coordinates of
Rr575160 1886 bp proximal
Sox2ot within coordinates of
 SNP C/T T C
rs48048230
MGI SNP Detail		 Chr3:34672468 Gm42205 within coordinates of
Rr575160 1878 bp proximal
Sox2ot within coordinates of
 SNP A/G G A
rs252596242
MGI SNP Detail		 Chr3:34672512 Gm42205 within coordinates of
Rr575160 1834 bp proximal
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs45740004
MGI SNP Detail		 Chr3:34672545 Gm42205 within coordinates of
Rr575160 1801 bp proximal
Sox2ot within coordinates of
 SNP A/G A G
rs235090763
MGI SNP Detail		 Chr3:34672559 Gm42205 within coordinates of
Rr575160 1787 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C T C C C C C C C C C C C C T C C T C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs251549493
MGI SNP Detail		 Chr3:34672567 Gm42205 within coordinates of
Rr575160 1779 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
rs49752177
MGI SNP Detail		 Chr3:34672616 Gm42205 within coordinates of
Rr575160 1730 bp proximal
Sox2ot within coordinates of
 SNP A/C C C A C A C A A
rs45780174
MGI SNP Detail		 Chr3:34672650 Gm42205 within coordinates of
Rr575160 1696 bp proximal
Sox2ot within coordinates of
 SNP A/C A C
rs264869924
MGI SNP Detail		 Chr3:34672651 Gm42205 within coordinates of
Rr575160 1695 bp proximal
Sox2ot within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs47916712
MGI SNP Detail		 Chr3:34672653 Gm42205 within coordinates of
Rr575160 1693 bp proximal
Sox2ot within coordinates of
 SNP T T
rs47089862
MGI SNP Detail		 Chr3:34672721 Gm42205 within coordinates of
Rr575160 1625 bp proximal
Sox2ot within coordinates of
 SNP G/T T T T G G T T
rs257439367
MGI SNP Detail		 Chr3:34672742 Gm42205 within coordinates of
Rr575160 1604 bp proximal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A G A A A A A G A A A A A A A A A A A A A A A A G A A A G G G
rs227436105
MGI SNP Detail		 Chr3:34672754 Gm42205 within coordinates of
Rr575160 1592 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243732889
MGI SNP Detail		 Chr3:34672760 Gm42205 within coordinates of
Rr575160 1586 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs262763989
MGI SNP Detail		 Chr3:34672761 Gm42205 within coordinates of
Rr575160 1585 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48049664
MGI SNP Detail		 Chr3:34672807 Gm42205 within coordinates of
Rr575160 1539 bp proximal
Sox2ot within coordinates of
 SNP C/G G G G C G G G G G G C C G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs31601362
MGI SNP Detail		 Chr3:34672892 Gm42205 within coordinates of
Rr575160 1454 bp proximal
Sox2ot within coordinates of
 SNP A/C C A
rs52095286
MGI SNP Detail		 Chr3:34672894 Gm42205 within coordinates of
Rr575160 1452 bp proximal
Sox2ot within coordinates of
 SNP C C
rs30704918
MGI SNP Detail		 Chr3:34672902 Gm42205 within coordinates of
Rr575160 1444 bp proximal
Sox2ot within coordinates of
 SNP C/G G C
rs31291448
MGI SNP Detail		 Chr3:34672904 Gm42205 within coordinates of
Rr575160 1442 bp proximal
Sox2ot within coordinates of
 SNP C/G G C
rs30906262
MGI SNP Detail		 Chr3:34672906 Gm42205 within coordinates of
Rr575160 1440 bp proximal
Sox2ot within coordinates of
 SNP C/G G C
rs580698880
MGI SNP Detail		 Chr3:34672931 Gm42205 within coordinates of
Rr575160 1415 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A
rs584448786
MGI SNP Detail		 Chr3:34672947 Gm42205 within coordinates of
Rr575160 1399 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G A G G G G G A A G G G G G G G A A A A A G A G A G G G G G G G G G G A G G G G G A G A A A A
rs249881904
MGI SNP Detail		 Chr3:34672953 Gm42205 within coordinates of
Rr575160 1393 bp proximal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217646503
MGI SNP Detail		 Chr3:34672963 Gm42205 within coordinates of
Rr575160 1383 bp proximal
Sox2ot within coordinates of
 SNP C/G G G G G G G G G G C G G G G G G G G G G G G C G G C G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs587524210
MGI SNP Detail		 Chr3:34673032 Gm42205 within coordinates of
Rr575160 1314 bp proximal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs581186567
MGI SNP Detail		 Chr3:34673037 Gm42205 within coordinates of
Rr575160 1309 bp proximal
Sox2ot within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs236084636
MGI SNP Detail		 Chr3:34673056 Gm42205 within coordinates of
Rr575160 1290 bp proximal
Sox2ot within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs30312287
MGI SNP Detail		 Chr3:34673096 Gm42205 within coordinates of
Rr575160 1250 bp proximal
Sox2ot within coordinates of
 SNP A/C A C A A
rs31374195
MGI SNP Detail		 Chr3:34673127 Gm42205 within coordinates of
Rr575160 1219 bp proximal
Sox2ot within coordinates of
 SNP A/T A A T A A
rs235054506
MGI SNP Detail		 Chr3:34673132 Gm42205 within coordinates of
Rr575160 1214 bp proximal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262176417
MGI SNP Detail		 Chr3:34673197 Gm42205 within coordinates of
Rr575159 within coordinates of
Rr575160 1149 bp proximal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31434442
MGI SNP Detail		 Chr3:34673216 Gm42205 within coordinates of
Rr575159 within coordinates of
Rr575160 1130 bp proximal
Sox2ot within coordinates of
 SNP A/T T T A T T
rs30022205
MGI SNP Detail		 Chr3:34673221 Gm42205 within coordinates of
Rr575159 within coordinates of
Rr575160 1125 bp proximal
Sox2ot within coordinates of
 SNP C/T T T C T C T T C T C T T
rs256687922
MGI SNP Detail		 Chr3:34673246 Gm42205 within coordinates of
Rr575159 within coordinates of
Rr575160 1100 bp proximal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226240894
MGI SNP Detail		 Chr3:34673288 Gm42205 within coordinates of
Rr575159 within coordinates of
Rr575160 1058 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C T C C C C C T C C C C C C C C C C C C C C C C T C C C T T T
rs584783071
MGI SNP Detail		 Chr3:34673296 Gm42205 within coordinates of
Rr575159 within coordinates of
Rr575160 1050 bp proximal
Sox2ot within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs30311834
MGI SNP Detail		 Chr3:34673344 Gm42205 within coordinates of
Rr575159 within coordinates of
Rr575160 1002 bp proximal
Sox2ot within coordinates of
 SNP C/T C T C C
rs49029782
MGI SNP Detail		 Chr3:34673360 Gm42205 within coordinates of
Rr575159 within coordinates of
Rr575160 986 bp proximal
Sox2ot within coordinates of
 SNP A/G G A
rs50714776
MGI SNP Detail		 Chr3:34673372 Gm42205 within coordinates of
Rr575159 within coordinates of
Rr575160 974 bp proximal
Sox2ot within coordinates of
 SNP C/T T T C T C T
rs48857120
MGI SNP Detail		 Chr3:34673625 Gm42205 within coordinates of
Rr575160 721 bp proximal
Sox2ot within coordinates of
 SNP C/T C T C
rs51173066
MGI SNP Detail		 Chr3:34673641 Gm42205 within coordinates of
Rr575160 705 bp proximal
Sox2ot within coordinates of
 SNP A/G G A G
rs48188968
MGI SNP Detail		 Chr3:34673666 Gm42205 within coordinates of
Rr575160 680 bp proximal
Sox2ot within coordinates of
 SNP C/T T T C T C T C T C T T
rs227515813
MGI SNP Detail		 Chr3:34673755 Gm42205 within coordinates of
Rr575160 591 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244958736
MGI SNP Detail		 Chr3:34673788 Gm42205 within coordinates of
Rr575160 558 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs52421931
MGI SNP Detail		 Chr3:34673842 Gm42205 within coordinates of
Rr575160 504 bp proximal
Sox2ot within coordinates of
 SNP A/G A G
rs52364940
MGI SNP Detail		 Chr3:34673857 Gm42205 within coordinates of
Rr575160 489 bp proximal
Sox2ot within coordinates of
 SNP C/T T C T
rs578894357
MGI SNP Detail		 Chr3:34673859 Gm42205 within coordinates of
Rr575160 487 bp proximal
Sox2ot within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs246187578
MGI SNP Detail		 Chr3:34673881 Gm42205 within coordinates of
Rr575160 465 bp proximal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs52284993
MGI SNP Detail		 Chr3:34673899 Gm42205 within coordinates of
Rr575160 447 bp proximal
Sox2ot within coordinates of
 SNP C/T T C T T C T C T T
rs225492771
MGI SNP Detail		 Chr3:34673900 Gm42205 within coordinates of
Rr575160 446 bp proximal
Sox2ot within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs251302350
MGI SNP Detail		 Chr3:34673907 Gm42205 within coordinates of
Rr575160 439 bp proximal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C T C T T T T T C T T T T T T T T T T T T T T T T C T T T C C C
rs582507170
MGI SNP Detail		 Chr3:34673942 Gm42205 within coordinates of
Rr575160 404 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G A G G G G G G A G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs49003219
MGI SNP Detail		 Chr3:34673999 Gm42205 within coordinates of
Rr575160 347 bp proximal
Sox2ot within coordinates of
 SNP A/G A A G G A A
rs48352439
MGI SNP Detail		 Chr3:34674010 Gm42205 within coordinates of
Rr575160 336 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C T C T C C
rs261757074
MGI SNP Detail		 Chr3:34674051 Gm42205 within coordinates of
Rr575160 295 bp proximal
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs49096364
MGI SNP Detail		 Chr3:34674125 Gm42205 within coordinates of
Rr575160 221 bp proximal
Sox2ot within coordinates of
 SNP A/C C A
rs235256190
MGI SNP Detail		 Chr3:34674158 Gm42205 within coordinates of
Rr575160 188 bp proximal
Sox2ot within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs251348072
MGI SNP Detail		 Chr3:34674159 Gm42205 within coordinates of
Rr575160 187 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221487859
MGI SNP Detail		 Chr3:34674173 Gm42205 within coordinates of
Rr575160 173 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46827282
MGI SNP Detail		 Chr3:34674187 Gm42205 within coordinates of
Rr575160 159 bp proximal
Sox2ot within coordinates of
 SNP C/T C C T C C T C T C T C T
rs49663305
MGI SNP Detail		 Chr3:34674212 Gm42205 within coordinates of
Rr575160 134 bp proximal
Sox2ot within coordinates of
 SNP G/T T T G T G T G G T T
rs50751255
MGI SNP Detail		 Chr3:34674228 Gm42205 within coordinates of
Rr575160 118 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C T C T C C C
rs242073816
MGI SNP Detail		 Chr3:34674231 Gm42205 within coordinates of
Rr575160 115 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265913114
MGI SNP Detail		 Chr3:34674237 Gm42205 within coordinates of
Rr575160 109 bp proximal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229237309
MGI SNP Detail		 Chr3:34674240 Gm42205 within coordinates of
Rr575160 106 bp proximal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240507416
MGI SNP Detail		 Chr3:34674241 Gm42205 within coordinates of
Rr575160 105 bp proximal
Sox2ot within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs47176939
MGI SNP Detail		 Chr3:34674320 Gm42205 within coordinates of
Rr575160 26 bp proximal
Sox2ot within coordinates of
 SNP A/C C A C A C C
rs225451890
MGI SNP Detail		 Chr3:34674340 Gm42205 within coordinates of
Rr575160 6 bp proximal
Sox2ot within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs255968994
MGI SNP Detail		 Chr3:34674357 Gm42205 within coordinates of
Rr575160 within coordinates of
Sox2ot within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs211865829
MGI SNP Detail		 Chr3:34674359 Gm42205 within coordinates of
Rr575160 within coordinates of
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs47068479
MGI SNP Detail		 Chr3:34674380 Gm42205 within coordinates of
Rr575160 within coordinates of
Sox2ot within coordinates of
 SNP G/T G G T G T G T G G
rs250208496
MGI SNP Detail		 Chr3:34674406 Gm42205 within coordinates of
Rr575160 within coordinates of
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48930847
MGI SNP Detail		 Chr3:34674449 Gm42205 within coordinates of
Rr575160 within coordinates of
Sox2ot within coordinates of
 SNP C/T C C C C T T C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235471982
MGI SNP Detail		 Chr3:34674479 Gm42205 within coordinates of
Rr575160 within coordinates of
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251573984
MGI SNP Detail		 Chr3:34674569 Rr575160 within coordinates of
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A G A A A A A A A A A A A G G G A G A G A G A A A G A A A A A A G A A A A A G A A A G G G
rs215964528
MGI SNP Detail		 Chr3:34674585 Rr575160 within coordinates of
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs48110797
MGI SNP Detail		 Chr3:34674620 Rr575160 26 bp distal
Sox2ot within coordinates of
 SNP A/G A G
rs49265363
MGI SNP Detail		 Chr3:34674622 Rr575160 28 bp distal
Sox2ot within coordinates of
 SNP C/G G C
rs220693583
MGI SNP Detail		 Chr3:34674671 Rr575160 77 bp distal
Sox2ot within coordinates of
 SNP A/G A A A G A A A A A A G A A A A A A A A G G A G A A A A A G A A A A A A A A A A A A A A A A G A A G G G G
rs237093088
MGI SNP Detail		 Chr3:34674675 Rr575160 81 bp distal
Sox2ot within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254198678
MGI SNP Detail		 Chr3:34674686 Rr575160 92 bp distal
Sox2ot within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs47741655
MGI SNP Detail		 Chr3:34674687 Rr575160 93 bp distal
Sox2ot within coordinates of
 SNP C C
rs49915830
MGI SNP Detail		 Chr3:34674709 Rr575160 115 bp distal
Sox2ot within coordinates of
 SNP C C
rs259921991
MGI SNP Detail		 Chr3:34674744 Rr575160 150 bp distal
Sox2ot within coordinates of
 SNP A/T T T T A T T T T T T A T T T T T T T T A A T A T T T T T A T T T T T T T T T T T T T T T T A T T A A A A
rs221678326
MGI SNP Detail		 Chr3:34674856 Rr575160 262 bp distal
Sox2ot within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs387702906
MGI SNP Detail		 Chr3:34674880 Rr575160 286 bp distal
Sox2ot within coordinates of
 SNP A/T A A A A A A T A A A A A A A A T A A T A A A A A T A A A A A T A A A A A A
rs258959842
MGI SNP Detail		 Chr3:34675067 Rr575160 473 bp distal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G
rs259287949
MGI SNP Detail		 Chr3:34675867 Rr575160 1273 bp distal
Sox2ot within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs229489537
MGI SNP Detail		 Chr3:34675905 Rr575160 1311 bp distal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs50737839
MGI SNP Detail		 Chr3:34676008 Rr575160 1414 bp distal
Sox2ot within coordinates of
 SNP C/T C C T C C T C T C T C C T
rs216297614
MGI SNP Detail		 Chr3:34676050 Rr575160 1456 bp distal
Sox2ot within coordinates of
 SNP G/T T T T G T T T T T G G G T T T T T T T G G G G G T G T T T T T G T T T T T T G T T T T T G T G G G G
rs238143414
MGI SNP Detail		 Chr3:34676076 Rr575160 1482 bp distal
Sox2ot within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs45822015
MGI SNP Detail		 Chr3:34676096 Rr575160 1502 bp distal
Sox2ot within coordinates of
 SNP A/G G G G G G A G A G
rs212459428
MGI SNP Detail		 Chr3:34676113 Rr575160 1519 bp distal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235559462
MGI SNP Detail		 Chr3:34676146 Rr575160 1552 bp distal
Sox2ot within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C A C A C C C C C A C C C C C C C C C C C C C C C C A C C C A A A
rs49631768
MGI SNP Detail		 Chr3:34676152 Rr575160 1558 bp distal
Sox2ot within coordinates of
 SNP C/T C T C
rs48182778
MGI SNP Detail		 Chr3:34676162 Rr575160 1568 bp distal
Sox2ot within coordinates of
 SNP C/T C T C
rs233801193
MGI SNP Detail		 Chr3:34676184 Rr575160 1590 bp distal
Sox2ot within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
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Showing SNP(s) 1 - 100 of 115
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
07/22/2025
MGI 6.24 		The Jackson Laboratory