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Mouse SNP Summary
Symbol
Name
ID
Rr575171
regulatory region 575171
MGI:8037303

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Showing SNP(s) 1 - 66 of 66

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs48563006
MGI SNP Detail
Chr3:34707796 Rr366704 within coordinates of
Rr575170 within coordinates of
Rr575171 1899 bp proximal
Sox2ot within coordinates of
SNP A/G G G G G G G A G G G G G G G G
rs231943413
MGI SNP Detail
Chr3:34707925 Rr366704 within coordinates of
Rr575170 within coordinates of
Rr575171 1770 bp proximal
Sox2ot within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs262586330
MGI SNP Detail
Chr3:34707926 Rr366704 within coordinates of
Rr575170 within coordinates of
Rr575171 1769 bp proximal
Sox2ot within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs220807367
MGI SNP Detail
Chr3:34708316 Rr366704 within coordinates of
Rr575170 within coordinates of
Rr575171 1379 bp proximal
Sox2ot within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs245443450
MGI SNP Detail
Chr3:34708454 Rr366704 within coordinates of
Rr575170 within coordinates of
Rr575171 1241 bp proximal
Sox2ot within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs51011713
MGI SNP Detail
Chr3:34708455 Rr366704 within coordinates of
Rr575170 within coordinates of
Rr575171 1240 bp proximal
Sox2ot within coordinates of
SNP A/C C C C C C C C C C C C C C A C
rs579992642
MGI SNP Detail
Chr3:34708539 Rr366704 within coordinates of
Rr575170 within coordinates of
Rr575171 1156 bp proximal
Sox2ot within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs583599920
MGI SNP Detail
Chr3:34708556 Rr366704 within coordinates of
Rr575170 within coordinates of
Rr575171 1139 bp proximal
Sox2ot within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260580818
MGI SNP Detail
Chr3:34708582 Rr366704 within coordinates of
Rr575170 within coordinates of
Rr575171 1113 bp proximal
Sox2ot within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223516847
MGI SNP Detail
Chr3:34708680 Rr366704 within coordinates of
Rr575170 within coordinates of
Rr575171 1015 bp proximal
Sox2ot within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs240637843
MGI SNP Detail
Chr3:34708729 Rr366704 within coordinates of
Rr575171 966 bp proximal
Sox2ot within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259998819
MGI SNP Detail
Chr3:34708730 Rr366704 within coordinates of
Rr575171 965 bp proximal
Sox2ot within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225916104
MGI SNP Detail
Chr3:34708733 Rr366704 within coordinates of
Rr575171 962 bp proximal
Sox2ot within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs244350248
MGI SNP Detail
Chr3:34708743 Rr366704 within coordinates of
Rr575171 952 bp proximal
Sox2ot within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs49652567
MGI SNP Detail
Chr3:34708804 Rr366704 within coordinates of
Rr575171 891 bp proximal
Sox2ot within coordinates of
SNP A/G G G G G G G A G A G A G G A G
rs228644636
MGI SNP Detail
Chr3:34708829 Rr366704 within coordinates of
Rr575171 866 bp proximal
Sox2ot within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs50060570
MGI SNP Detail
Chr3:34708854 Rr366704 within coordinates of
Rr575171 841 bp proximal
Sox2ot within coordinates of
SNP G/T G G G G G G T G T G T G G T G
rs48849249
MGI SNP Detail
Chr3:34708885 Rr366704 within coordinates of
Rr575171 810 bp proximal
Sox2ot within coordinates of
SNP A/G A A A A A A G A A A A A A A A
rs219220293
MGI SNP Detail
Chr3:34708902 Rr366704 within coordinates of
Rr575171 793 bp proximal
Sox2ot within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs46405401
MGI SNP Detail
Chr3:34708926 Rr366704 within coordinates of
Rr575171 769 bp proximal
Sox2ot within coordinates of
SNP A/C A A A A A A A A C A C A A A A
rs226828476
MGI SNP Detail
Chr3:34709044 Rr366704 within coordinates of
Rr575171 651 bp proximal
Sox2ot within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49318398
MGI SNP Detail
Chr3:34709483 Rr366704 within coordinates of
Rr575171 212 bp proximal
Sox2ot within coordinates of
SNP A/C A A A A A A A A C A C A A C A
rs213368001
MGI SNP Detail
Chr3:34709505 Rr366704 within coordinates of
Rr575171 190 bp proximal
Sox2ot within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231903385
MGI SNP Detail
Chr3:34709538 Rr366704 within coordinates of
Rr575171 157 bp proximal
Sox2ot within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs255309473
MGI SNP Detail
Chr3:34709542 Rr366704 within coordinates of
Rr575171 153 bp proximal
Sox2ot within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs48828391
MGI SNP Detail
Chr3:34709577 Rr366704 within coordinates of
Rr575171 118 bp proximal
Sox2ot within coordinates of
SNP C/T T T T T T T C T T T T T T T T
rs49263370
MGI SNP Detail
Chr3:34709591 Rr366704 within coordinates of
Rr575171 104 bp proximal
Sox2ot within coordinates of
SNP C/T T T T T T T C T T T T T T T T
rs50641557
MGI SNP Detail
Chr3:34709593 Rr366704 within coordinates of
Rr575171 102 bp proximal
Sox2ot within coordinates of
SNP C/G G G G G G G G G C G C G G C G
rs223753064
MGI SNP Detail
Chr3:34709612 Rr366704 within coordinates of
Rr575171 83 bp proximal
Sox2ot within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240897233
MGI SNP Detail
Chr3:34709614 Rr366704 within coordinates of
Rr575171 81 bp proximal
Sox2ot within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253643886
MGI SNP Detail
Chr3:34709630 Rr366704 within coordinates of
Rr575171 65 bp proximal
Sox2ot within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219658572
MGI SNP Detail
Chr3:34709646 Rr366704 within coordinates of
Rr575171 49 bp proximal
Sox2ot within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs247056168
MGI SNP Detail
Chr3:34709765 Rr366704 within coordinates of
Rr575171 within coordinates of
Sox2ot within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261648961
MGI SNP Detail
Chr3:34709769 Rr366704 within coordinates of
Rr575171 within coordinates of
Sox2ot within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs47565509
MGI SNP Detail
Chr3:34709983 Rr575171 within coordinates of
Sox2ot within coordinates of
SNP C/T C C C C C C T C T C T C C T C
rs50323441
MGI SNP Detail
Chr3:34710254 Rr575171 59 bp distal
Sox2ot within coordinates of
SNP A/G G G G G G G G G A G A G G A G
rs259749486
MGI SNP Detail
Chr3:34710287 Rr575171 92 bp distal
Sox2ot within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs226794998
MGI SNP Detail
Chr3:34710291 Rr575171 96 bp distal
Sox2ot within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245978769
MGI SNP Detail
Chr3:34710396 Rr575171 201 bp distal
Sox2ot within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs213329363
MGI SNP Detail
Chr3:34710397 Rr575171 202 bp distal
Sox2ot within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230655526
MGI SNP Detail
Chr3:34710463 Rr575171 268 bp distal
Sox2ot within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252183660
MGI SNP Detail
Chr3:34710548 Rr575171 353 bp distal
Sox2ot within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs50437399
MGI SNP Detail
Chr3:34710698 Rr575171 503 bp distal
Sox2ot within coordinates of
SNP C/G C C C C C C C C C G C C G C
rs241813683
MGI SNP Detail
Chr3:34710703 Rr575171 508 bp distal
Sox2ot within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs254147508
MGI SNP Detail
Chr3:34710988 Rr575171 793 bp distal
Sox2ot within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30703472
MGI SNP Detail
Chr3:34711038 Rr575171 843 bp distal
Sox2ot within coordinates of
SNP C/T C T C C C T C T C T C T C T T T
rs234334362
MGI SNP Detail
Chr3:34711157 Rr575171 962 bp distal
Sox2ot within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253983858
MGI SNP Detail
Chr3:34711363 Rr575171 1168 bp distal
Sox2ot within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219625227
MGI SNP Detail
Chr3:34711386 Rr575171 1191 bp distal
Sox2ot within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237120790
MGI SNP Detail
Chr3:34711454 Rr575171 1259 bp distal
Sox2ot within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260956242
MGI SNP Detail
Chr3:34711519 Rr575171 1324 bp distal
Sox2ot within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs221751932
MGI SNP Detail
Chr3:34711652 Rr575171 1457 bp distal
Sox2ot within coordinates of
SNP C/T C C C C C C C C C T C C C C C C C C C C C C T C C T C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs250398020
MGI SNP Detail
Chr3:34711805 Rr575171 1610 bp distal
Sox2ot within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259708381
MGI SNP Detail
Chr3:34711809 Rr575171 1614 bp distal
Sox2ot within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs220670758
MGI SNP Detail
Chr3:34711843 Rr575171 1648 bp distal
Sox2ot within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs239984073
MGI SNP Detail
Chr3:34711878 Rr575171 1683 bp distal
Sox2ot within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255399770
MGI SNP Detail
Chr3:34711880 Rr575171 1685 bp distal
Sox2ot within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs587460602
MGI SNP Detail
Chr3:34711885 Rr575171 1690 bp distal
Sox2ot within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs230774041
MGI SNP Detail
Chr3:34711972 Rr575171 1777 bp distal
Sox2ot within coordinates of
SNP C/G C C C C C C C C C G C C C C C C C C C G C C G C C G C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs30749695
MGI SNP Detail
Chr3:34712015 Rr575171 1820 bp distal
Sox2ot within coordinates of
SNP C/G G G C G
rs264779006
MGI SNP Detail
Chr3:34712026 Rr575171 1831 bp distal
Sox2ot within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs387840849
MGI SNP Detail
Chr3:34712089 Rr575171 1894 bp distal
Sox2ot within coordinates of
SNP A/G G G G G G G G G G A G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs232879286
MGI SNP Detail
Chr3:34712122 Rr575171 1927 bp distal
Sox2ot within coordinates of
SNP C/G G G G G G G G G G C G G G G G G G G G G G G C G G C G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs583106950
MGI SNP Detail
Chr3:34712129 Rr575171 1934 bp distal
Sox2ot within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586555892
MGI SNP Detail
Chr3:34712130 Rr575171 1935 bp distal
Sox2ot within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248595762
MGI SNP Detail
Chr3:34712151 Rr575171 1956 bp distal
Sox2ot within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
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Showing SNP(s) 1 - 66 of 66

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory