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Mouse SNP Summary
Symbol
Name
ID 		Rr575676
regulatory region 575676
MGI:8037808

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256768580
MGI SNP Detail
Alliance Variant		 Chr3:38537100 Ankrd50 Coding-Synonymous
Rr575676 1883 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs31523971
MGI SNP Detail
Alliance Variant		 Chr3:38537217 Ankrd50 Coding-Synonymous
Rr575676 1766 bp proximal
 SNP C/T C T C T T T
rs33861319
MGI SNP Detail
Alliance Variant		 Chr3:38537274 Ankrd50 Coding-Synonymous
Rr575676 1709 bp proximal
 SNP G/T G G T G G G
rs30553227
MGI SNP Detail
Alliance Variant		 Chr3:38537289 Ankrd50 Coding-Synonymous
Rr575676 1694 bp proximal
 SNP C/T T C T T C T
rs217555724
MGI SNP Detail
Alliance Variant		 Chr3:38537298 Ankrd50 Coding-Synonymous
Rr575676 1685 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30857242
MGI SNP Detail
Alliance Variant		 Chr3:38537310 Ankrd50 Coding-Synonymous
Rr575676 1673 bp proximal
 SNP C/T C T C C T C
rs30459268
MGI SNP Detail
Alliance Variant		 Chr3:38537371 Ankrd50 mRNA-UTR
Rr575676 1612 bp proximal
 SNP C/T C C C T C C C
rs212777035
MGI SNP Detail
Alliance Variant		 Chr3:38537445 Ankrd50 mRNA-UTR
Ankrd50 Noncoding-Transcript-Variant
Rr575676 1538 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234640588
MGI SNP Detail
Alliance Variant		 Chr3:38537451 Ankrd50 mRNA-UTR
Ankrd50 Noncoding-Transcript-Variant
Rr575676 1532 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs262460610
MGI SNP Detail
Alliance Variant		 Chr3:38537461 Ankrd50 mRNA-UTR
Ankrd50 Noncoding-Transcript-Variant
Rr575676 1522 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs50442053
MGI SNP Detail
Alliance Variant		 Chr3:38537498 Ankrd50 mRNA-UTR
Ankrd50 Noncoding-Transcript-Variant
Rr575676 1485 bp proximal
 SNP A/G A G G
rs240518166
MGI SNP Detail
Alliance Variant		 Chr3:38537565 Ankrd50 mRNA-UTR
Ankrd50 Noncoding-Transcript-Variant
Rr575676 1418 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs250944957
MGI SNP Detail
Alliance Variant		 Chr3:38537615 Ankrd50 mRNA-UTR
Ankrd50 Noncoding-Transcript-Variant
Rr575676 1368 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30051991
MGI SNP Detail
Alliance Variant		 Chr3:38537836 Ankrd50 Intron
Ankrd50 mRNA-UTR
Ankrd50 Noncoding-Transcript-Variant
Rr575676 1147 bp proximal
 SNP C/T C C T C C C
rs240652630
MGI SNP Detail
Alliance Variant		 Chr3:38537892 Ankrd50 Intron
Ankrd50 mRNA-UTR
Ankrd50 Noncoding-Transcript-Variant
Rr575676 1091 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249149592
MGI SNP Detail
Alliance Variant		 Chr3:38537936 Ankrd50 Intron
Ankrd50 mRNA-UTR
Ankrd50 Noncoding-Transcript-Variant
Rr575676 1047 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs220487008
MGI SNP Detail
Alliance Variant		 Chr3:38537942 Ankrd50 Intron
Ankrd50 mRNA-UTR
Ankrd50 Noncoding-Transcript-Variant
Rr575676 1041 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs244462116
MGI SNP Detail
Alliance Variant		 Chr3:38537955 Ankrd50 Intron
Ankrd50 mRNA-UTR
Ankrd50 Noncoding-Transcript-Variant
Rr575676 1028 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G A G G G G G G G A G G G G G G G G G G G G G G G G A G G G A G G
rs265160453
MGI SNP Detail
Alliance Variant		 Chr3:38538094 Ankrd50 Intron
Ankrd50 mRNA-UTR
Ankrd50 Noncoding-Transcript-Variant
Rr575676 889 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232738297
MGI SNP Detail
Alliance Variant		 Chr3:38538248 Ankrd50 Intron
Ankrd50 Noncoding-Transcript-Variant
Rr575676 735 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261347878
MGI SNP Detail
Alliance Variant		 Chr3:38538424 Ankrd50 Intron
Ankrd50 Noncoding-Transcript-Variant
Rr575676 559 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs228646091
MGI SNP Detail
Alliance Variant		 Chr3:38538616 Ankrd50 Intron
Ankrd50 Noncoding-Transcript-Variant
Cpgi13104 within coordinates of
Rr575676 367 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs244485463
MGI SNP Detail
Alliance Variant		 Chr3:38538771 Ankrd50 Intron
Ankrd50 Noncoding-Transcript-Variant
Cpgi13104 within coordinates of
Rr575676 212 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs51371093
MGI SNP Detail		 Chr3:38539090 Cpgi13104 within coordinates of
Rr397648 within coordinates of
Rr575676 within coordinates of
 SNP T T T T T T
rs49279325
MGI SNP Detail		 Chr3:38539145 Cpgi13104 within coordinates of
Rr397648 within coordinates of
Rr575676 within coordinates of
 SNP A/C A A A C A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251400177
MGI SNP Detail		 Chr3:38539190 Cpgi13104 within coordinates of
Rr397648 within coordinates of
Rr575676 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A
rs46454687
MGI SNP Detail		 Chr3:38539223 Cpgi13104 within coordinates of
Rr575676 within coordinates of
 SNP C C C C C C
rs238677204
MGI SNP Detail		 Chr3:38539232 Cpgi13104 within coordinates of
Rr575676 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs52167936
MGI SNP Detail		 Chr3:38539273 Cpgi13104 within coordinates of
Gm65619 within coordinates of
Rr575676 9 bp distal
Rr575677 within coordinates of
 SNP T T T
rs217133036
MGI SNP Detail		 Chr3:38539314 Cpgi13104 within coordinates of
Gm65619 within coordinates of
Rr575676 50 bp distal
Rr575677 within coordinates of
 SNP C/G C C C C C G G G C G C C G G G G G G G C C C G C C G C G G C C G C C C C C C G C C C C G C C C C C
rs234084450
MGI SNP Detail		 Chr3:38539336 Cpgi13104 within coordinates of
Gm65619 within coordinates of
Rr575676 72 bp distal
Rr575677 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs52348020
MGI SNP Detail		 Chr3:38539359 Cpgi13104 within coordinates of
Gm65619 within coordinates of
Rr575676 95 bp distal
Rr575677 within coordinates of
Tssr28929 within coordinates of
 SNP A/C C A
rs46229164
MGI SNP Detail		 Chr3:38539399 Cpgi13104 within coordinates of
Gm65619 within coordinates of
Rr575676 135 bp distal
Rr575677 within coordinates of
 SNP T T T
rs50933018
MGI SNP Detail		 Chr3:38539445 Cpgi13104 within coordinates of
Gm65619 within coordinates of
Rr575676 181 bp distal
Rr575677 within coordinates of
 SNP A A A
rs49328319
MGI SNP Detail		 Chr3:38539454 Cpgi13104 within coordinates of
Gm65619 within coordinates of
Rr575676 190 bp distal
Rr575677 within coordinates of
 SNP G/T T T T T T G G G T G T T G G G G G G G G T T G T T G T G G T T T G T T T T T T G T T T T G T T G T T T T
rs46405163
MGI SNP Detail		 Chr3:38539462 Cpgi13104 within coordinates of
Gm65619 within coordinates of
Rr575676 198 bp distal
Rr575677 within coordinates of
 SNP C/T C T
rs50966548
MGI SNP Detail		 Chr3:38539498 Cpgi13104 within coordinates of
Gm65619 within coordinates of
Rr575676 234 bp distal
Rr575677 within coordinates of
 SNP T T T
rs47257072
MGI SNP Detail		 Chr3:38539590 Gm65619 within coordinates of
Rr575676 326 bp distal
Rr575677 within coordinates of
 SNP G G G G
rs238138856
MGI SNP Detail		 Chr3:38539644 Rr575676 380 bp distal
Rr575677 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs47788468
MGI SNP Detail		 Chr3:38539655 Rr575676 391 bp distal
Rr575677 within coordinates of
 SNP C C C C
rs46768403
MGI SNP Detail		 Chr3:38539665 Rr575676 401 bp distal
Rr575677 within coordinates of
 SNP A A A A
rs48909565
MGI SNP Detail		 Chr3:38539789 Rr575676 525 bp distal
Rr575677 within coordinates of
 SNP G G G
rs262325326
MGI SNP Detail		 Chr3:38539889 Rr575676 625 bp distal
Rr575677 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs50781124
MGI SNP Detail		 Chr3:38539892 Rr575676 628 bp distal
Rr575677 within coordinates of
 SNP T T T T T
rs50863415
MGI SNP Detail		 Chr3:38539903 Rr575676 639 bp distal
Rr575677 within coordinates of
 SNP C C C C C
rs51198659
MGI SNP Detail		 Chr3:38539954 Rr575676 690 bp distal
Rr575677 within coordinates of
 SNP C C C
rs46412776
MGI SNP Detail		 Chr3:38539962 Rr575676 698 bp distal
Rr575677 within coordinates of
 SNP G G G
rs211873999
MGI SNP Detail		 Chr3:38540004 Rr575676 740 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs31195309
MGI SNP Detail		 Chr3:38540013 Rr575676 749 bp distal
 SNP G/T T G T T T
rs262147542
MGI SNP Detail		 Chr3:38540018 Rr575676 754 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225275169
MGI SNP Detail		 Chr3:38540041 Rr575676 777 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs234356728
MGI SNP Detail		 Chr3:38540065 Rr575676 801 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31597150
MGI SNP Detail		 Chr3:38540066 Rr575676 802 bp distal
 SNP G/T T G T T T
rs223074930
MGI SNP Detail		 Chr3:38540102 Rr575676 838 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238102844
MGI SNP Detail		 Chr3:38540110 Rr575676 846 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs261577942
MGI SNP Detail		 Chr3:38540130 Rr575676 866 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs223322067
MGI SNP Detail		 Chr3:38540220 Rr575676 956 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs243395388
MGI SNP Detail		 Chr3:38540223 Rr575676 959 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs49804819
MGI SNP Detail		 Chr3:38540245 Rr575676 981 bp distal
 SNP T T T T T T
rs50703350
MGI SNP Detail		 Chr3:38540357 Rr575676 1093 bp distal
 SNP A A A A A A
rs46701910
MGI SNP Detail		 Chr3:38540378 Rr575676 1114 bp distal
 SNP T T T T T T
rs48011799
MGI SNP Detail		 Chr3:38540399 Rr575676 1135 bp distal
 SNP T T T T
rs50819408
MGI SNP Detail		 Chr3:38540402 Rr575676 1138 bp distal
 SNP T T T T T
rs253553600
MGI SNP Detail		 Chr3:38540440 Rr575676 1176 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs211776732
MGI SNP Detail		 Chr3:38540576 Rr575676 1312 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs46907576
MGI SNP Detail		 Chr3:38540657 Rr575676 1393 bp distal
 SNP C C C C C
rs51332908
MGI SNP Detail		 Chr3:38540662 Rr575676 1398 bp distal
 SNP A A A A
rs46619810
MGI SNP Detail		 Chr3:38540787 Rr575676 1523 bp distal
 SNP T T T T T
rs49277235
MGI SNP Detail		 Chr3:38540851 Rr575676 1587 bp distal
 SNP C C C C
rs255538841
MGI SNP Detail		 Chr3:38540990 Rr575676 1726 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47519013
MGI SNP Detail		 Chr3:38540998 Rr575676 1734 bp distal
 SNP C C C
rs231172375
MGI SNP Detail		 Chr3:38541031 Rr575676 1767 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs260947908
MGI SNP Detail		 Chr3:38541060 Rr575676 1796 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs223574873
MGI SNP Detail		 Chr3:38541088 Rr575676 1824 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs246046472
MGI SNP Detail		 Chr3:38541108 Rr575676 1844 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs51058553
MGI SNP Detail		 Chr3:38541156 Rr575676 1892 bp distal
 SNP C C C
rs220933182
MGI SNP Detail		 Chr3:38541231 Rr575676 1967 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs239077542
MGI SNP Detail		 Chr3:38541234 Rr575676 1970 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46781683
MGI SNP Detail		 Chr3:38541235 Rr575676 1971 bp distal
 SNP A/G G G G G A G
rs45691141
MGI SNP Detail		 Chr3:38541240 Rr575676 1976 bp distal
 SNP A/G A G A G G
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Showing SNP(s) 1 - 80 of 80
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory