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Mouse SNP Summary
Symbol
Name
ID 		Rr575970
regulatory region 575970
MGI:8038102

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217155030
MGI SNP Detail
Alliance Variant		 Chr3:41517549 Gm31266 within coordinates of
Jade1 Intron
Rr575965 within coordinates of
Rr575970 1817 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A G A G A A A A A A A A A A A A
rs241716885
MGI SNP Detail
Alliance Variant		 Chr3:41517558 Gm31266 within coordinates of
Jade1 Intron
Rr575965 within coordinates of
Rr575970 1808 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C T C T C C C C C C C C C C C C
rs587389283
MGI SNP Detail
Alliance Variant		 Chr3:41517608 Cpgi13118 within coordinates of
Gm31266 within coordinates of
Jade1 Intron
Rr575965 within coordinates of
Rr575970 1758 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T A T A T T T T T T T T T T T T
rs581242227
MGI SNP Detail
Alliance Variant		 Chr3:41517613 Cpgi13118 within coordinates of
Gm31266 within coordinates of
Jade1 Intron
Rr575965 within coordinates of
Rr575970 1753 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C T C T C C C C C C C C C C C C
rs584921950
MGI SNP Detail
Alliance Variant		 Chr3:41517617 Cpgi13118 within coordinates of
Gm31266 within coordinates of
Jade1 Intron
Rr575965 within coordinates of
Rr575970 1749 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C T C T C C C C C C C C C C C C
rs249540978
MGI SNP Detail
Alliance Variant		 Chr3:41517683 Cpgi13118 within coordinates of
Gm31266 within coordinates of
Jade1 Intron
Rr575965 within coordinates of
Rr575970 1683 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs212217255
MGI SNP Detail
Alliance Variant		 Chr3:41517853 Cpgi13118 within coordinates of
Jade1 Intron
Jade1 mRNA-UTR
Jade1 Noncoding-Transcript-Variant
Rr575965 within coordinates of
Rr575970 1513 bp proximal
Tssr29003 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs236933400
MGI SNP Detail
Alliance Variant		 Chr3:41517929 Cpgi13118 within coordinates of
Jade1 Intron
Jade1 mRNA-UTR
Jade1 Noncoding-Transcript-Variant
Rr575965 within coordinates of
Rr575970 1437 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
rs251186310
MGI SNP Detail
Alliance Variant		 Chr3:41518509 Cpgi13118 within coordinates of
Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575967 within coordinates of
Rr575970 857 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs31378148
MGI SNP Detail
Alliance Variant		 Chr3:41518660 Cpgi13118 within coordinates of
Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 706 bp proximal
 SNP C/T T C C T T T
rs233728088
MGI SNP Detail
Alliance Variant		 Chr3:41518685 Cpgi13118 within coordinates of
Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 681 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30546399
MGI SNP Detail
Alliance Variant		 Chr3:41518825 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575969 within coordinates of
Rr575970 541 bp proximal
 SNP A/G G A A G G G
rs226872463
MGI SNP Detail
Alliance Variant		 Chr3:41518874 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575969 within coordinates of
Rr575970 492 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs250294579
MGI SNP Detail
Alliance Variant		 Chr3:41518893 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575969 within coordinates of
Rr575970 473 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238807690
MGI SNP Detail
Alliance Variant		 Chr3:41519582 Cpgi13119 within coordinates of
Jade1 Intron
Jade1 mRNA-UTR
Jade1 Noncoding-Transcript-Variant
Rr575970 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C G C C C C G C G C C C C C C C G C C C C
rs255785635
MGI SNP Detail
Alliance Variant		 Chr3:41519666 Cpgi13119 within coordinates of
Jade1 Intron
Jade1 mRNA-UTR
Jade1 Noncoding-Transcript-Variant
Rr575970 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G A G A G G G G G G G G G G G G
rs227848653
MGI SNP Detail
Alliance Variant		 Chr3:41519687 Cpgi13119 within coordinates of
Jade1 Intron
Jade1 mRNA-UTR
Jade1 Noncoding-Transcript-Variant
Rr575970 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs239469382
MGI SNP Detail
Alliance Variant		 Chr3:41519753 Cpgi13119 within coordinates of
Jade1 Intron
Jade1 mRNA-UTR
Jade1 Noncoding-Transcript-Variant
Rr575970 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs586680457
MGI SNP Detail
Alliance Variant		 Chr3:41519880 Cpgi13119 within coordinates of
Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs263238630
MGI SNP Detail
Alliance Variant		 Chr3:41520381 Cpgi13119 within coordinates of
Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 within coordinates of
 SNP G/T G T
rs232867742
MGI SNP Detail
Alliance Variant		 Chr3:41520568 Cpgi13119 within coordinates of
Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253597192
MGI SNP Detail
Alliance Variant		 Chr3:41520670 Cpgi13119 within coordinates of
Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 67 bp distal
Rr575973 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G A G A G G G G G G G G G G G G
rs225302064
MGI SNP Detail
Alliance Variant		 Chr3:41520677 Cpgi13119 within coordinates of
Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 74 bp distal
Rr575973 within coordinates of
 SNP C C C
rs230777340
MGI SNP Detail
Alliance Variant		 Chr3:41520821 Cpgi13119 within coordinates of
Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 218 bp distal
Rr575973 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245003164
MGI SNP Detail
Alliance Variant		 Chr3:41520852 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 249 bp distal
Rr575973 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A G A G A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215870901
MGI SNP Detail
Alliance Variant		 Chr3:41520911 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 308 bp distal
Rr575973 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C G C G C C C C C C C G C C C C
rs233783694
MGI SNP Detail
Alliance Variant		 Chr3:41520945 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 342 bp distal
Rr575973 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs255115776
MGI SNP Detail
Alliance Variant		 Chr3:41521027 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 424 bp distal
Rr575973 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs219313654
MGI SNP Detail
Alliance Variant		 Chr3:41521086 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 483 bp distal
Rr575973 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A G A G A A A A A A A G A A A A
rs239705592
MGI SNP Detail
Alliance Variant		 Chr3:41521114 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 511 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261657183
MGI SNP Detail
Alliance Variant		 Chr3:41521123 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 520 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G A G A G G G G G G G A G G G G
rs220540784
MGI SNP Detail
Alliance Variant		 Chr3:41521185 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 582 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G C G C G G G G G G G C G G G G
rs238427229
MGI SNP Detail
Alliance Variant		 Chr3:41521283 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 680 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T T C T T T T C T C T T T T T T T C T T T C
rs250094683
MGI SNP Detail
Alliance Variant		 Chr3:41521405 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 802 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs221666245
MGI SNP Detail
Alliance Variant		 Chr3:41521412 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 809 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs239507127
MGI SNP Detail
Alliance Variant		 Chr3:41521467 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 864 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A G A G A A A A A A A G A A A A
rs264538560
MGI SNP Detail
Alliance Variant		 Chr3:41521484 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 881 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G A G A G G G G G G G A G G G G
rs234408800
MGI SNP Detail
Alliance Variant		 Chr3:41521514 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 911 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G A G A G G G G G G G A G G G A
rs241985948
MGI SNP Detail
Alliance Variant		 Chr3:41521529 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 926 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A G A G A A A A A A A G A A A G
rs264534811
MGI SNP Detail
Alliance Variant		 Chr3:41521646 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1043 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs230658133
MGI SNP Detail
Alliance Variant		 Chr3:41521723 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1120 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244673961
MGI SNP Detail
Alliance Variant		 Chr3:41521902 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1299 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs215906382
MGI SNP Detail
Alliance Variant		 Chr3:41521910 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1307 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A G A G A A A A A A A A A A A
rs580949862
MGI SNP Detail
Alliance Variant		 Chr3:41521927 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1324 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227276116
MGI SNP Detail
Alliance Variant		 Chr3:41522019 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1416 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs248689319
MGI SNP Detail
Alliance Variant		 Chr3:41522037 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1434 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs217904108
MGI SNP Detail
Alliance Variant		 Chr3:41522136 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1533 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C T C T C C C C C C C C C C C C
rs237077948
MGI SNP Detail
Alliance Variant		 Chr3:41522285 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1682 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs256489226
MGI SNP Detail
Alliance Variant		 Chr3:41522313 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1710 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584139756
MGI SNP Detail
Alliance Variant		 Chr3:41522354 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1751 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212420168
MGI SNP Detail
Alliance Variant		 Chr3:41522410 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1807 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232217058
MGI SNP Detail
Alliance Variant		 Chr3:41522422 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1819 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249718350
MGI SNP Detail
Alliance Variant		 Chr3:41522433 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1830 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T T C C C C T C C C C C C C C C C T C T C C C C C C C C C C C T
rs221690905
MGI SNP Detail
Alliance Variant		 Chr3:41522441 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1838 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs45997740
MGI SNP Detail
Alliance Variant		 Chr3:41522456 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1853 bp distal
 SNP C/T C C C C C C T C C C T C T T C
rs264426773
MGI SNP Detail
Alliance Variant		 Chr3:41522468 Jade1 Intron
Jade1 Noncoding-Transcript-Variant
Rr575970 1865 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 56 of 56
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory