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Mouse SNP Summary
Symbol
Name
ID 		Rr576628
regulatory region 576628
MGI:8038760

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261404280
MGI SNP Detail		 Chr3:52947080 Gm42901 within coordinates of
Rr576628 1935 bp proximal
 SNP A/G A G
rs227533823
MGI SNP Detail		 Chr3:52947108 Gm42901 within coordinates of
Rr576628 1907 bp proximal
 SNP C/T C T
rs247271667
MGI SNP Detail		 Chr3:52947139 Gm42901 within coordinates of
Rr576628 1876 bp proximal
 SNP C/T T C
rs213882806
MGI SNP Detail		 Chr3:52947159 Gm42901 within coordinates of
Rr576628 1856 bp proximal
 SNP A/G G A
rs262729109
MGI SNP Detail		 Chr3:52947180 Gm42901 within coordinates of
Rr576628 1835 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T G T T T T T G T T T T T T G T T T T T T T T T T T
rs222993120
MGI SNP Detail		 Chr3:52947203 Gm42901 within coordinates of
Rr576628 1812 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C C
rs237568684
MGI SNP Detail		 Chr3:52947255 Gm42901 within coordinates of
Rr576628 1760 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs248852800
MGI SNP Detail		 Chr3:52947288 Gm42901 within coordinates of
Rr576628 1727 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs217895364
MGI SNP Detail		 Chr3:52947301 Gm42901 within coordinates of
Rr576628 1714 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30321918
MGI SNP Detail		 Chr3:52947325 Gm42901 within coordinates of
Rr576628 1690 bp proximal
 SNP C/G C C C C C G
rs238957968
MGI SNP Detail		 Chr3:52947378 Gm42901 within coordinates of
Rr576628 1637 bp proximal
 SNP C/T T C
rs225430425
MGI SNP Detail		 Chr3:52947397 Gm42901 within coordinates of
Rr576628 1618 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245434599
MGI SNP Detail		 Chr3:52947432 Gm42901 within coordinates of
Rr576628 1583 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G G
rs265308826
MGI SNP Detail		 Chr3:52947599 Gm42901 within coordinates of
Rr576628 1416 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225792319
MGI SNP Detail		 Chr3:52947630 Gm42901 within coordinates of
Rr576628 1385 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244656511
MGI SNP Detail		 Chr3:52947689 Gm42901 within coordinates of
Rr576628 1326 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256369533
MGI SNP Detail		 Chr3:52947698 Gm42901 within coordinates of
Rr576628 1317 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs229502106
MGI SNP Detail		 Chr3:52947700 Gm42901 within coordinates of
Rr576628 1315 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs249105647
MGI SNP Detail		 Chr3:52947717 Gm42901 within coordinates of
Rr576628 1298 bp proximal
 SNP A/G G A
rs213280361
MGI SNP Detail		 Chr3:52947725 Gm42901 within coordinates of
Rr576628 1290 bp proximal
 SNP C/T T C
rs240742833
MGI SNP Detail		 Chr3:52947798 Gm42901 within coordinates of
Rr576628 1217 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252019610
MGI SNP Detail		 Chr3:52947805 Gm42901 within coordinates of
Rr576628 1210 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs214760913
MGI SNP Detail		 Chr3:52947819 Gm42901 within coordinates of
Rr576628 1196 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs30321921
MGI SNP Detail		 Chr3:52947824 Gm42901 within coordinates of
Rr576628 1191 bp proximal
 SNP A/C A A C A A A A A A A C
rs248933849
MGI SNP Detail		 Chr3:52947857 Gm42901 within coordinates of
Rr576628 1158 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217931791
MGI SNP Detail		 Chr3:52947874 Gm42901 within coordinates of
Rr576628 1141 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs235099893
MGI SNP Detail		 Chr3:52947889 Gm42901 within coordinates of
Rr576628 1126 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31712438
MGI SNP Detail		 Chr3:52947986 Gm42901 within coordinates of
Rr576628 1029 bp proximal
 SNP C/T C C T C C
rs30514528
MGI SNP Detail		 Chr3:52947989 Gm42901 within coordinates of
Rr576628 1026 bp proximal
 SNP C/T C C T C C
rs30311911
MGI SNP Detail		 Chr3:52947995 Gm42901 within coordinates of
Rr576628 1020 bp proximal
 SNP A/C C C A C C
rs262859501
MGI SNP Detail		 Chr3:52948117 Gm42901 within coordinates of
Rr576626 within coordinates of
Rr576628 898 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs219667268
MGI SNP Detail		 Chr3:52948186 Gm42901 within coordinates of
Rr576626 within coordinates of
Rr576628 829 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238122026
MGI SNP Detail		 Chr3:52948189 Gm42901 within coordinates of
Rr576626 within coordinates of
Rr576628 826 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs256402351
MGI SNP Detail		 Chr3:52948372 Gm42901 within coordinates of
Rr576626 within coordinates of
Rr576628 643 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229581634
MGI SNP Detail		 Chr3:52948541 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Rr576626 within coordinates of
Rr576628 474 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254251712
MGI SNP Detail		 Chr3:52948577 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Rr576626 within coordinates of
Rr576628 438 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265788609
MGI SNP Detail		 Chr3:52948601 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Rr576626 within coordinates of
Rr576628 414 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231859282
MGI SNP Detail		 Chr3:52948604 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Rr576626 within coordinates of
Rr576628 411 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257031255
MGI SNP Detail		 Chr3:52948652 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Rr576626 within coordinates of
Rr576628 363 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6162150
MGI SNP Detail		 Chr3:52948804 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Rr576626 within coordinates of
Rr576628 211 bp proximal
 SNP A/G G A
rs231163779
MGI SNP Detail		 Chr3:52948872 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Rr576627 within coordinates of
Rr576628 143 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242743857
MGI SNP Detail		 Chr3:52948897 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Rr576627 within coordinates of
Rr576628 118 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs211706393
MGI SNP Detail
Alliance Variant		 Chr3:52948977 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Lhfpl6 mRNA-UTR
Rr576627 within coordinates of
Rr576628 38 bp proximal
Tssr29102 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A
rs235179313
MGI SNP Detail
Alliance Variant		 Chr3:52949029 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Lhfpl6 mRNA-UTR
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs581054145
MGI SNP Detail
Alliance Variant		 Chr3:52949212 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260191996
MGI SNP Detail
Alliance Variant		 Chr3:52949347 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs225099838
MGI SNP Detail
Alliance Variant		 Chr3:52949433 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237740315
MGI SNP Detail
Alliance Variant		 Chr3:52949487 Cpgi13160 within coordinates of
Gm42901 within coordinates of
Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs262567577
MGI SNP Detail
Alliance Variant		 Chr3:52949554 Gm42901 within coordinates of
Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs219697724
MGI SNP Detail
Alliance Variant		 Chr3:52949563 Gm42901 within coordinates of
Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 5 bp distal
Rr576629 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30322604
MGI SNP Detail
Alliance Variant		 Chr3:52949642 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 84 bp distal
Rr576629 within coordinates of
 SNP A/G G G G G G G G G G G G A A
rs249702207
MGI SNP Detail
Alliance Variant		 Chr3:52949673 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 115 bp distal
Rr576629 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs223493970
MGI SNP Detail
Alliance Variant		 Chr3:52949797 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 239 bp distal
Rr576629 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs250652736
MGI SNP Detail
Alliance Variant		 Chr3:52949857 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 299 bp distal
Rr576629 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263818468
MGI SNP Detail
Alliance Variant		 Chr3:52949918 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 360 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs584236198
MGI SNP Detail
Alliance Variant		 Chr3:52949942 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 384 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232502721
MGI SNP Detail
Alliance Variant		 Chr3:52949966 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 408 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs253111369
MGI SNP Detail
Alliance Variant		 Chr3:52950022 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 464 bp distal
 SNP C/T T C
rs256073159
MGI SNP Detail
Alliance Variant		 Chr3:52950078 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 520 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs225070023
MGI SNP Detail
Alliance Variant		 Chr3:52950087 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 529 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242815173
MGI SNP Detail
Alliance Variant		 Chr3:52950101 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 543 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs211746132
MGI SNP Detail
Alliance Variant		 Chr3:52950330 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 772 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs45733759
MGI SNP Detail
Alliance Variant		 Chr3:52950352 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 794 bp distal
 SNP C/T C C T
rs233553955
MGI SNP Detail
Alliance Variant		 Chr3:52950369 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 811 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49190311
MGI SNP Detail
Alliance Variant		 Chr3:52950433 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 875 bp distal
 SNP A/G G G A
rs30322606
MGI SNP Detail
Alliance Variant		 Chr3:52950443 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 885 bp distal
 SNP A/G G G G G G G G G G G G A A
rs49580258
MGI SNP Detail
Alliance Variant		 Chr3:52950582 Lhfpl6 mRNA-UTR
Lhfpl6 Noncoding-Transcript-Variant
Lhfpl6 Splice-Site
Rr576628 1024 bp distal
 SNP A/G G A
rs30322608
MGI SNP Detail
Alliance Variant		 Chr3:52950589 Lhfpl6 Intron
Lhfpl6 mRNA-UTR
Lhfpl6 Noncoding-Transcript-Variant
Lhfpl6 Splice-Site
Rr576628 1031 bp distal
 SNP G/T T T T T T T T T T T T T G T T T G G
rs213502448
MGI SNP Detail
Alliance Variant		 Chr3:52950596 Lhfpl6 Intron
Lhfpl6 mRNA-UTR
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 1038 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230870546
MGI SNP Detail
Alliance Variant		 Chr3:52950597 Lhfpl6 Intron
Lhfpl6 mRNA-UTR
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 1039 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs30322610
MGI SNP Detail
Alliance Variant		 Chr3:52950790 Lhfpl6 Coding-Synonymous
Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 1232 bp distal
 SNP C/T C C C C C C C T C C
rs223561499
MGI SNP Detail
Alliance Variant		 Chr3:52950817 Lhfpl6 Coding-Synonymous
Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 1259 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A
rs30322612
MGI SNP Detail
Alliance Variant		 Chr3:52950886 Lhfpl6 Coding-Synonymous
Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 1328 bp distal
 SNP C/T T T T T T T T T T C C T T C
rs263586843
MGI SNP Detail
Alliance Variant		 Chr3:52950931 Lhfpl6 Coding-Synonymous
Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 1373 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30323905
MGI SNP Detail
Alliance Variant		 Chr3:52951013 Lhfpl6 Coding-Synonymous
Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 1455 bp distal
 SNP C/T T T T T T T C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247276338
MGI SNP Detail
Alliance Variant		 Chr3:52951087 Lhfpl6 Coding-Synonymous
Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 1529 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs30323908
MGI SNP Detail
Alliance Variant		 Chr3:52951168 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 1610 bp distal
 SNP A/C A A A A A A A C
rs30323911
MGI SNP Detail
Alliance Variant		 Chr3:52951220 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 1662 bp distal
 SNP A/G A A A A A A A A G G A
rs30324954
MGI SNP Detail
Alliance Variant		 Chr3:52951343 Lhfpl6 Intron
Lhfpl6 Noncoding-Transcript-Variant
Rr576628 1785 bp distal
 SNP A/G G G G G G G G G A G G
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Showing SNP(s) 1 - 79 of 79
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory