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Mouse SNP Summary
Symbol
Name
ID
Rr577080
regulatory region 577080
MGI:8039212

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232436734
MGI SNP Detail
Alliance Variant
Chr3:57193314 Rr577080 1986 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs257381448
MGI SNP Detail
Alliance Variant
Chr3:57193380 Rr577080 1920 bp proximal
Tm4sf1 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214947043
MGI SNP Detail
Alliance Variant
Chr3:57193447 Rr577080 1853 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs238352931
MGI SNP Detail
Alliance Variant
Chr3:57193477 Rr577080 1823 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs242922166
MGI SNP Detail
Alliance Variant
Chr3:57193479 Rr577080 1821 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs582347434
MGI SNP Detail
Alliance Variant
Chr3:57193503 Rr577080 1797 bp proximal
Tm4sf1 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs211945273
MGI SNP Detail
Alliance Variant
Chr3:57193537 Rr577080 1763 bp proximal
Tm4sf1 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30712337
MGI SNP Detail
Alliance Variant
Chr3:57193547 Rr577080 1753 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T T C T T
rs252623860
MGI SNP Detail
Alliance Variant
Chr3:57193586 Rr577080 1714 bp proximal
Tm4sf1 mRNA-UTR
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs225215701
MGI SNP Detail
Alliance Variant
Chr3:57193670 Rr577080 1630 bp proximal
Tm4sf1 mRNA-UTR
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs237518046
MGI SNP Detail
Alliance Variant
Chr3:57193679 Rr577080 1621 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262292956
MGI SNP Detail
Alliance Variant
Chr3:57193688 Rr577080 1612 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs222335594
MGI SNP Detail
Alliance Variant
Chr3:57193700 Rr577080 1600 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs244770658
MGI SNP Detail
Alliance Variant
Chr3:57193759 Rr577080 1541 bp proximal
Tm4sf1 mRNA-UTR
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs256993635
MGI SNP Detail
Alliance Variant
Chr3:57193780 Rr577080 1520 bp proximal
Tm4sf1 mRNA-UTR
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs218417681
MGI SNP Detail
Alliance Variant
Chr3:57193800 Rr577080 1500 bp proximal
Tm4sf1 mRNA-UTR
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs243083328
MGI SNP Detail
Alliance Variant
Chr3:57193930 Rr577080 1370 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260918299
MGI SNP Detail
Alliance Variant
Chr3:57194019 Rr577080 1281 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs30712339
MGI SNP Detail
Alliance Variant
Chr3:57194042 Rr577080 1258 bp proximal
Tm4sf1 mRNA-UTR
SNP A/T T A A
rs233621034
MGI SNP Detail
Alliance Variant
Chr3:57194114 Rr577080 1186 bp proximal
Tm4sf1 mRNA-UTR
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs245330016
MGI SNP Detail
Alliance Variant
Chr3:57194148 Rr577080 1152 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs265309496
MGI SNP Detail
Alliance Variant
Chr3:57194184 Rr577080 1116 bp proximal
Tm4sf1 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs30712341
MGI SNP Detail
Alliance Variant
Chr3:57194207 Rr577080 1093 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T C T C
rs243258593
MGI SNP Detail
Alliance Variant
Chr3:57194335 Rr577080 965 bp proximal
Tm4sf1 mRNA-UTR
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs211908634
MGI SNP Detail
Alliance Variant
Chr3:57194354 Rr577080 946 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229108419
MGI SNP Detail
Alliance Variant
Chr3:57194416 Rr577080 884 bp proximal
Tm4sf1 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs246609630
MGI SNP Detail
Alliance Variant
Chr3:57194425 Rr577080 875 bp proximal
Tm4sf1 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216644597
MGI SNP Detail
Alliance Variant
Chr3:57194434 Rr577080 866 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs239980294
MGI SNP Detail
Alliance Variant
Chr3:57194480 Rr577080 820 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs257501234
MGI SNP Detail
Alliance Variant
Chr3:57194495 Rr577080 805 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586402368
MGI SNP Detail
Alliance Variant
Chr3:57194526 Rr577080 774 bp proximal
Tm4sf1 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs580654999
MGI SNP Detail
Alliance Variant
Chr3:57194536 Rr577080 764 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs213819000
MGI SNP Detail
Alliance Variant
Chr3:57194577 Rr577080 723 bp proximal
Tm4sf1 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230366149
MGI SNP Detail
Alliance Variant
Chr3:57194646 Rr577080 654 bp proximal
Tm4sf1 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249393841
MGI SNP Detail
Alliance Variant
Chr3:57194691 Rr577080 609 bp proximal
Tm4sf1 mRNA-UTR
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs223292911
MGI SNP Detail
Alliance Variant
Chr3:57194692 Rr577080 608 bp proximal
Tm4sf1 mRNA-UTR
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs243022091
MGI SNP Detail
Alliance Variant
Chr3:57194693 Rr577080 607 bp proximal
Tm4sf1 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A G G G G G G A G G G G G G G A G G G G
rs582870853
MGI SNP Detail
Alliance Variant
Chr3:57194859 Rr577080 441 bp proximal
Tm4sf1 mRNA-UTR
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C A C C C C C C A C C C C C C C C C C C
rs254753711
MGI SNP Detail
Alliance Variant
Chr3:57194861 Rr577080 439 bp proximal
Tm4sf1 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs225295164
MGI SNP Detail
Alliance Variant
Chr3:57194875 Rr577080 425 bp proximal
Tm4sf1 mRNA-UTR
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs248411889
MGI SNP Detail
Alliance Variant
Chr3:57194913 Rr577080 387 bp proximal
Tm4sf1 mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262802160
MGI SNP Detail
Alliance Variant
Chr3:57194948 Rr577079 within coordinates of
Rr577080 352 bp proximal
Tm4sf1 mRNA-UTR
Tm4sf1 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T
rs230320983
MGI SNP Detail
Alliance Variant
Chr3:57194994 Rr577079 within coordinates of
Rr577080 306 bp proximal
Tm4sf1 mRNA-UTR
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs236806625
MGI SNP Detail
Alliance Variant
Chr3:57195001 Rr577079 within coordinates of
Rr577080 299 bp proximal
Tm4sf1 mRNA-UTR
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs254032747
MGI SNP Detail
Alliance Variant
Chr3:57195044 Rr577079 within coordinates of
Rr577080 256 bp proximal
Tm4sf1 mRNA-UTR
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs229428151
MGI SNP Detail
Alliance Variant
Chr3:57195047 Rr577079 within coordinates of
Rr577080 253 bp proximal
Tm4sf1 mRNA-UTR
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs246573957
MGI SNP Detail
Alliance Variant
Chr3:57195048 Rr577079 within coordinates of
Rr577080 252 bp proximal
Tm4sf1 mRNA-UTR
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217018511
MGI SNP Detail
Alliance Variant
Chr3:57195056 Rr577079 within coordinates of
Rr577080 244 bp proximal
Tm4sf1 mRNA-UTR
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231583906
MGI SNP Detail
Alliance Variant
Chr3:57195225 Rr577080 75 bp proximal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs580107029
MGI SNP Detail
Alliance Variant
Chr3:57195293 Rr577080 7 bp proximal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256283638
MGI SNP Detail
Alliance Variant
Chr3:57195318 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs579130060
MGI SNP Detail
Alliance Variant
Chr3:57195353 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs587330255
MGI SNP Detail
Alliance Variant
Chr3:57195354 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs581744933
MGI SNP Detail
Alliance Variant
Chr3:57195355 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs213296608
MGI SNP Detail
Alliance Variant
Chr3:57195414 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230287950
MGI SNP Detail
Alliance Variant
Chr3:57195459 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs249331130
MGI SNP Detail
Alliance Variant
Chr3:57195463 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs217195615
MGI SNP Detail
Alliance Variant
Chr3:57195645 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs30712343
MGI SNP Detail
Alliance Variant
Chr3:57195671 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T C C C C T C C C
rs260448387
MGI SNP Detail
Alliance Variant
Chr3:57195689 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225561953
MGI SNP Detail
Alliance Variant
Chr3:57195704 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs585206959
MGI SNP Detail
Alliance Variant
Chr3:57195739 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs586799614
MGI SNP Detail
Alliance Variant
Chr3:57195754 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs245754270
MGI SNP Detail
Alliance Variant
Chr3:57195786 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs30713185
MGI SNP Detail
Alliance Variant
Chr3:57195823 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G G G G G G A G G G
rs580629145
MGI SNP Detail
Alliance Variant
Chr3:57195876 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs219720264
MGI SNP Detail
Alliance Variant
Chr3:57195918 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs250135268
MGI SNP Detail
Alliance Variant
Chr3:57195926 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/T A T
rs253997774
MGI SNP Detail
Alliance Variant
Chr3:57195979 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222829174
MGI SNP Detail
Alliance Variant
Chr3:57196045 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/C/T C C C C C C C C C C C C C C C C C C C T C C A C C C C A C C C C C A C C C C C C A C C C C C C A C C C C
rs240999143
MGI SNP Detail
Alliance Variant
Chr3:57196054 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263489126
MGI SNP Detail
Alliance Variant
Chr3:57196122 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G C G G G G G G C G G G G G G G G G G G
rs584326893
MGI SNP Detail
Alliance Variant
Chr3:57196123 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs578604858
MGI SNP Detail
Alliance Variant
Chr3:57196143 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A G G G G G G G G G G G G
rs231997998
MGI SNP Detail
Alliance Variant
Chr3:57196154 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T G T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251426421
MGI SNP Detail
Alliance Variant
Chr3:57196169 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G T G G G G G G T G G G G G G G T G G G G
rs265059218
MGI SNP Detail
Alliance Variant
Chr3:57196274 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs224990687
MGI SNP Detail
Alliance Variant
Chr3:57196434 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G A G G G G G G G A G G G G
rs45761860
MGI SNP Detail
Alliance Variant
Chr3:57196568 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G A G
rs217102698
MGI SNP Detail
Alliance Variant
Chr3:57196589 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs235326604
MGI SNP Detail
Alliance Variant
Chr3:57196597 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30713187
MGI SNP Detail
Alliance Variant
Chr3:57196604 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T C T
rs257985839
MGI SNP Detail
Alliance Variant
Chr3:57196689 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs215454372
MGI SNP Detail
Alliance Variant
Chr3:57196690 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs240289625
MGI SNP Detail
Alliance Variant
Chr3:57196703 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30713189
MGI SNP Detail
Alliance Variant
Chr3:57196775 Rr577080 within coordinates of
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/G C C G G C C
rs219683860
MGI SNP Detail
Alliance Variant
Chr3:57196813 Rr577080 24 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231049842
MGI SNP Detail
Alliance Variant
Chr3:57196838 Rr577080 49 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs51411650
MGI SNP Detail
Alliance Variant
Chr3:57196873 Rr577080 84 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/T A A T
rs46112349
MGI SNP Detail
Alliance Variant
Chr3:57196933 Rr577080 144 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T T C
rs46367328
MGI SNP Detail
Alliance Variant
Chr3:57196960 Rr577080 171 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G A G
rs30713191
MGI SNP Detail
Alliance Variant
Chr3:57197017 Rr577080 228 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP G/T T T T T G T T T
rs48718718
MGI SNP Detail
Alliance Variant
Chr3:57197057 Rr577080 268 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G G A
rs246721522
MGI SNP Detail
Alliance Variant
Chr3:57197058 Rr577080 269 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs262312480
MGI SNP Detail
Alliance Variant
Chr3:57197080 Rr577080 291 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30713193
MGI SNP Detail
Alliance Variant
Chr3:57197146 Rr577080 357 bp distal
Tm4sf1 Coding-Synonymous
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G A A A A A A G G A A A
rs30714035
MGI SNP Detail
Alliance Variant
Chr3:57197429 Rr577080 640 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T C C C T C C
rs260989138
MGI SNP Detail
Alliance Variant
Chr3:57197501 Rr577080 712 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs228359227
MGI SNP Detail
Alliance Variant
Chr3:57197534 Rr577080 745 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A G A A A A A A G A A A A
rs252838017
MGI SNP Detail
Alliance Variant
Chr3:57197561 Rr577080 772 bp distal
Tm4sf1 Intron
Tm4sf1 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 100 of 130

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory

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