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Mouse SNP Summary
Symbol
Name
ID
Rr577677
regulatory region 577677
MGI:8039809

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225852315
MGI SNP Detail
Alliance Variant
Chr3:65298001 Rr577677 1963 bp proximal
Ssr3 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G A A
rs241451972
MGI SNP Detail
Alliance Variant
Chr3:65298037 Rr577677 1927 bp proximal
Ssr3 Intron
SNP A/G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G A A
rs257045546
MGI SNP Detail
Alliance Variant
Chr3:65298254 Rr577677 1710 bp proximal
Ssr3 Intron
SNP G/T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T G T T T T T T G T T T T T T T T G G
rs587526282
MGI SNP Detail
Alliance Variant
Chr3:65298302 Rr577677 1662 bp proximal
Ssr3 Intron
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C
rs227564037
MGI SNP Detail
Alliance Variant
Chr3:65298471 Rr577677 1493 bp proximal
Ssr3 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580611776
MGI SNP Detail
Alliance Variant
Chr3:65298504 Rr577677 1460 bp proximal
Ssr3 Intron
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs237523660
MGI SNP Detail
Alliance Variant
Chr3:65298521 Rr577677 1443 bp proximal
Ssr3 Intron
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs584288573
MGI SNP Detail
Alliance Variant
Chr3:65298528 Rr577677 1436 bp proximal
Ssr3 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265100644
MGI SNP Detail
Alliance Variant
Chr3:65298615 Rr577677 1349 bp proximal
Ssr3 Intron
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A C C
rs230957131
MGI SNP Detail
Alliance Variant
Chr3:65298617 Rr577677 1347 bp proximal
Ssr3 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs253074824
MGI SNP Detail
Alliance Variant
Chr3:65298635 Rr577677 1329 bp proximal
Ssr3 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs213011889
MGI SNP Detail
Alliance Variant
Chr3:65298686 Rr577677 1278 bp proximal
Ssr3 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228622850
MGI SNP Detail
Alliance Variant
Chr3:65298732 Rr577677 1232 bp proximal
Ssr3 Intron
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T
rs13459069
MGI SNP Detail
Alliance Variant
Chr3:65298790 Rr577677 1174 bp proximal
Ssr3 Coding-Synonymous
SNP A/G G A G G A A A A A G G G G G A G G G A A A A G G A G G A G G A G G G G A G G A G A
rs215422098
MGI SNP Detail
Alliance Variant
Chr3:65298870 Rr577677 1094 bp proximal
Ssr3 Coding-Synonymous
Ssr3 Splice-Site
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A G G
rs235202411
MGI SNP Detail
Alliance Variant
Chr3:65298923 Rr577677 1041 bp proximal
Ssr3 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs251548272
MGI SNP Detail
Alliance Variant
Chr3:65298932 Rr577677 1032 bp proximal
Ssr3 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T C T T T T T T C T T T T T T T T T T T T
rs214808986
MGI SNP Detail
Alliance Variant
Chr3:65298941 Rr577677 1023 bp proximal
Ssr3 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G A G G G G G G A G G G G G G G A G G G G
rs234326698
MGI SNP Detail
Alliance Variant
Chr3:65298955 Rr577677 1009 bp proximal
Ssr3 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261248915
MGI SNP Detail
Alliance Variant
Chr3:65299021 Rr577677 943 bp proximal
Ssr3 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs225547366
MGI SNP Detail
Alliance Variant
Chr3:65299032 Rr577677 932 bp proximal
Ssr3 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A G A A A A A A G A A A A A A A A A A A A
rs241314357
MGI SNP Detail
Alliance Variant
Chr3:65299065 Rr577677 899 bp proximal
Ssr3 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581072146
MGI SNP Detail
Alliance Variant
Chr3:65299124 Rr577677 840 bp proximal
Ssr3 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T T T T T T T A T T T T T T A T T T T T T T T T T T T
rs251143321
MGI SNP Detail
Alliance Variant
Chr3:65299159 Rr577677 805 bp proximal
Ssr3 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G T G G G G
rs221347221
MGI SNP Detail
Alliance Variant
Chr3:65299204 Rr577677 760 bp proximal
Ssr3 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T T T T T T T A T T T T T T A T T T T T T T A T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237596349
MGI SNP Detail
Alliance Variant
Chr3:65299234 Rr577677 730 bp proximal
Ssr3 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T C T T T T T T C T T T T T T T T T T T T
rs262763087
MGI SNP Detail
Alliance Variant
Chr3:65299258 Rr577677 706 bp proximal
Ssr3 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228060605
MGI SNP Detail
Alliance Variant
Chr3:65299305 Rr577677 659 bp proximal
Ssr3 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C T C C C C
rs584829389
MGI SNP Detail
Alliance Variant
Chr3:65299328 Rr577677 636 bp proximal
Ssr3 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs578987407
MGI SNP Detail
Alliance Variant
Chr3:65299331 Rr577677 633 bp proximal
Ssr3 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs241300668
MGI SNP Detail
Alliance Variant
Chr3:65299349 Rr577677 615 bp proximal
Ssr3 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs264872318
MGI SNP Detail
Alliance Variant
Chr3:65299351 Rr577677 613 bp proximal
Ssr3 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G A G G G G G G A G G G G G G G G G G G G
rs228685687
MGI SNP Detail
Alliance Variant
Chr3:65299419 Rr577677 545 bp proximal
Ssr3 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs248960469
MGI SNP Detail
Alliance Variant
Chr3:65299430 Cpgi13227 within coordinates of
Rr577677 534 bp proximal
Ssr3 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs215482022
MGI SNP Detail
Alliance Variant
Chr3:65299432 Cpgi13227 within coordinates of
Rr577677 532 bp proximal
Ssr3 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs228248847
MGI SNP Detail
Alliance Variant
Chr3:65299459 Cpgi13227 within coordinates of
Rr577677 505 bp proximal
Ssr3 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs33861586
MGI SNP Detail
Alliance Variant
Chr3:65299505 Cpgi13227 within coordinates of
Rr577677 459 bp proximal
Ssr3 Intron
SNP C/T T C
rs215196580
MGI SNP Detail
Alliance Variant
Chr3:65299633 Cpgi13227 within coordinates of
Rr577677 331 bp proximal
Ssr3 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236667167
MGI SNP Detail
Alliance Variant
Chr3:65299669 Cpgi13227 within coordinates of
Rr577677 295 bp proximal
Ssr3 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs255967996
MGI SNP Detail
Alliance Variant
Chr3:65299694 Cpgi13227 within coordinates of
Rr577677 270 bp proximal
Ssr3 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs216341913
MGI SNP Detail
Alliance Variant
Chr3:65299698 Cpgi13227 within coordinates of
Rr577677 266 bp proximal
Ssr3 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G A G G G G G G A G G G G G G G G G G G G
rs30138334
MGI SNP Detail
Alliance Variant
Chr3:65299710 Cpgi13227 within coordinates of
Rr577677 254 bp proximal
Ssr3 Intron
SNP A/G A G A G
rs234991852
MGI SNP Detail
Alliance Variant
Chr3:65299716 Cpgi13227 within coordinates of
Rr577677 248 bp proximal
Ssr3 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251016498
MGI SNP Detail
Alliance Variant
Chr3:65299760 Cpgi13227 within coordinates of
Rr577677 204 bp proximal
Ssr3 Intron
SNP C/G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G C G G G G G G C G G G G G G G C G G G
rs221382135
MGI SNP Detail
Alliance Variant
Chr3:65299764 Cpgi13227 within coordinates of
Rr577677 200 bp proximal
Ssr3 Intron
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A
rs237420674
MGI SNP Detail
Alliance Variant
Chr3:65300012 Cpgi13227 within coordinates of
Rr397698 within coordinates of
Rr577677 within coordinates of
Ssr3 mRNA-UTR
Tssr33465 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs262361158
MGI SNP Detail
Alliance Variant
Chr3:65300014 Cpgi13227 within coordinates of
Rr397698 within coordinates of
Rr577677 within coordinates of
Ssr3 mRNA-UTR
Tssr33465 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C A C C C C C C C C C C C
rs220400579
MGI SNP Detail
Alliance Variant
Chr3:65300032 Cpgi13227 within coordinates of
Rr397698 within coordinates of
Rr577677 within coordinates of
Ssr3 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs244966560
MGI SNP Detail
Chr3:65300089 Cpgi13227 within coordinates of
Rr397698 within coordinates of
Rr577677 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T G T T T T T T G T T T T T T T T T T T T
rs261996700
MGI SNP Detail
Chr3:65300090 Cpgi13227 within coordinates of
Rr397698 within coordinates of
Rr577677 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222736318
MGI SNP Detail
Chr3:65300115 Cpgi13227 within coordinates of
Rr397698 within coordinates of
Rr577677 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242975541
MGI SNP Detail
Chr3:65300181 Cpgi13227 within coordinates of
Rr397698 within coordinates of
Rr577677 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G A A A A A A G A A A A A A A G A A A A
rs259296537
MGI SNP Detail
Chr3:65300218 Cpgi13227 within coordinates of
Rr397698 within coordinates of
Rr577677 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228167540
MGI SNP Detail
Chr3:65300294 Cpgi13227 within coordinates of
Rr577677 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C A C C C C C C A C C C C C C C C C C C C
rs250993249
MGI SNP Detail
Chr3:65300356 Rr577677 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs265353639
MGI SNP Detail
Chr3:65300387 Rr577677 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228185303
MGI SNP Detail
Chr3:65300388 Rr577677 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T
rs254649939
MGI SNP Detail
Chr3:65300442 Rr577677 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs216407297
MGI SNP Detail
Chr3:65300476 Rr577677 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234846582
MGI SNP Detail
Chr3:65300515 Rr577677 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs244936586
MGI SNP Detail
Chr3:65300522 Rr577677 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs215721548
MGI SNP Detail
Chr3:65300543 Rr577677 9 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C G C C C C C C G C C C C C C C G C C C C
rs31435479
MGI SNP Detail
Chr3:65300590 Rr577677 56 bp distal
SNP C/T C T T C
rs108128771
MGI SNP Detail
Chr3:65300611 Rr577677 77 bp distal
SNP C/T C T C
rs581443395
MGI SNP Detail
Chr3:65301413 Gm5540 within coordinates of
Rr577677 879 bp distal
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs584822896
MGI SNP Detail
Chr3:65301448 Gm5540 within coordinates of
Rr577677 914 bp distal
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs30661444
MGI SNP Detail
Chr3:65301549 Gm5540 within coordinates of
Rr577677 1015 bp distal
SNP A/G A G G A
rs257761822
MGI SNP Detail
Chr3:65301644 Gm5540 within coordinates of
Rr577677 1110 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A
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Showing SNP(s) 1 - 68 of 68

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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