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Mouse SNP Summary
Symbol
Name
ID 		Rr578489
regulatory region 578489
MGI:8040621

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31216108
MGI SNP Detail
Alliance Variant		 Chr3:79132583 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 2000 bp proximal
 SNP A/C C C A A C C A C A A C C C C A
rs31216110
MGI SNP Detail
Alliance Variant		 Chr3:79132585 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1998 bp proximal
 SNP G/T T T T G G T G T T G T T T G
rs215255003
MGI SNP Detail
Alliance Variant		 Chr3:79132626 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1957 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs31216112
MGI SNP Detail
Alliance Variant		 Chr3:79132634 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1949 bp proximal
 SNP A/T A A A T T A A A T A A T T A A A T
rs31216994
MGI SNP Detail
Alliance Variant		 Chr3:79132672 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1911 bp proximal
 SNP A/G A A A A A A A A A A G A A G A
rs31216996
MGI SNP Detail
Alliance Variant		 Chr3:79132722 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1861 bp proximal
 SNP A/G A A A G G A A A G A A G G A A G A G
rs31216998
MGI SNP Detail
Alliance Variant		 Chr3:79132738 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1845 bp proximal
 SNP C/G C C C C C C C C C C G C C G C
rs31217000
MGI SNP Detail
Alliance Variant		 Chr3:79132793 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1790 bp proximal
 SNP G/T T T T T T T T T T T G T T G T
rs213844309
MGI SNP Detail
Alliance Variant		 Chr3:79132809 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1774 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233046904
MGI SNP Detail
Alliance Variant		 Chr3:79132900 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1683 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs31217002
MGI SNP Detail
Alliance Variant		 Chr3:79132909 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1674 bp proximal
 SNP A/G A A A G A A A G A A G G A A G A G
rs225024844
MGI SNP Detail
Alliance Variant		 Chr3:79132915 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1668 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30860338
MGI SNP Detail
Alliance Variant		 Chr3:79133007 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1576 bp proximal
 SNP A/G G G G G G G G A G A G G G G A
rs260201447
MGI SNP Detail
Alliance Variant		 Chr3:79133117 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1466 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs587356168
MGI SNP Detail
Alliance Variant		 Chr3:79133122 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1461 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs583693712
MGI SNP Detail
Alliance Variant		 Chr3:79133125 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1458 bp proximal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs222654821
MGI SNP Detail
Alliance Variant		 Chr3:79133164 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1419 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235789218
MGI SNP Detail
Alliance Variant		 Chr3:79133174 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1409 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs217825557
MGI SNP Detail
Alliance Variant		 Chr3:79133193 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1390 bp proximal
 SNP A/G A G
rs225058241
MGI SNP Detail
Alliance Variant		 Chr3:79133207 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1376 bp proximal
 SNP G/T G G G G G G G G G G G T G G T G G G T G G T G G G G G G T G G G
rs243821315
MGI SNP Detail
Alliance Variant		 Chr3:79133241 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1342 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs238280563
MGI SNP Detail
Alliance Variant		 Chr3:79133385 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1198 bp proximal
 SNP G/T T G
rs584256750
MGI SNP Detail
Alliance Variant		 Chr3:79133404 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1179 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30053295
MGI SNP Detail
Alliance Variant		 Chr3:79133441 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1142 bp proximal
 SNP A/C C C C A C C C A C C A C C C C C A
rs31217966
MGI SNP Detail
Alliance Variant		 Chr3:79133522 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 1061 bp proximal
 SNP A/G G G G G G G G G G G A G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219831088
MGI SNP Detail
Alliance Variant		 Chr3:79133622 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 961 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224553027
MGI SNP Detail
Alliance Variant		 Chr3:79133660 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 923 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs244565112
MGI SNP Detail
Alliance Variant		 Chr3:79133708 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 875 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31440342
MGI SNP Detail
Alliance Variant		 Chr3:79133744 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 839 bp proximal
 SNP C/T C C C T T C
rs233102037
MGI SNP Detail
Alliance Variant		 Chr3:79133756 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 827 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30552752
MGI SNP Detail
Alliance Variant		 Chr3:79133783 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 800 bp proximal
 SNP C/T T T C C C T
rs217268276
MGI SNP Detail
Alliance Variant		 Chr3:79133797 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 786 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs30206189
MGI SNP Detail
Alliance Variant		 Chr3:79133798 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 785 bp proximal
 SNP A/G A A G G G A
rs264260120
MGI SNP Detail
Alliance Variant		 Chr3:79133823 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 760 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222696137
MGI SNP Detail
Alliance Variant		 Chr3:79133824 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 759 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30905070
MGI SNP Detail
Alliance Variant		 Chr3:79133848 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 735 bp proximal
 SNP A/G A A G A A A
rs248815685
MGI SNP Detail
Alliance Variant		 Chr3:79133882 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 701 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs47247575
MGI SNP Detail
Alliance Variant		 Chr3:79133915 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 668 bp proximal
 SNP G G G G G G
rs49956687
MGI SNP Detail
Alliance Variant		 Chr3:79133976 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 607 bp proximal
 SNP A A
rs263085222
MGI SNP Detail
Alliance Variant		 Chr3:79133980 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 603 bp proximal
 SNP A/G A A A A A G A A A A A A G G G G G G G A A A G A A A A G A A A A A G A A A A A G G A A A G A A A G A A A A
rs232808087
MGI SNP Detail
Alliance Variant		 Chr3:79133984 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 599 bp proximal
 SNP C/T T T T T T C T T T T T C C C C C C C T T T C T T T T C T T T T T C T T T T T C C T T T C T T T T T T T T
rs247013345
MGI SNP Detail
Alliance Variant		 Chr3:79133985 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 598 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs50497304
MGI SNP Detail
Alliance Variant		 Chr3:79133988 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 595 bp proximal
 SNP A A
rs224584092
MGI SNP Detail
Alliance Variant		 Chr3:79134025 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 558 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs587167360
MGI SNP Detail
Alliance Variant		 Chr3:79134105 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 478 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs30660627
MGI SNP Detail
Alliance Variant		 Chr3:79134139 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 444 bp proximal
 SNP A/G G A
rs585099346
MGI SNP Detail
Alliance Variant		 Chr3:79134143 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 440 bp proximal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs578945321
MGI SNP Detail
Alliance Variant		 Chr3:79134195 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 388 bp proximal
 SNP A/G A A A A G A G A A A A A A A A A A A A A A G A A A A G A A A G A A A A G A A A A G G
rs582372674
MGI SNP Detail
Alliance Variant		 Chr3:79134205 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 378 bp proximal
 SNP A/G A A A A G A A A A A A A A G A A A A G A A A A A A A A A A A A A A A A
rs584885745
MGI SNP Detail
Alliance Variant		 Chr3:79134206 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 377 bp proximal
 SNP A/G G G G G A A G G G G G G G G A G G G G A G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212470246
MGI SNP Detail
Alliance Variant		 Chr3:79134228 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 355 bp proximal
 SNP A/C C A
rs257819831
MGI SNP Detail
Alliance Variant		 Chr3:79134258 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 325 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs231132106
MGI SNP Detail
Alliance Variant		 Chr3:79134265 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 318 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs257590938
MGI SNP Detail
Alliance Variant		 Chr3:79134280 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 303 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs226779851
MGI SNP Detail
Alliance Variant		 Chr3:79134281 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 302 bp proximal
 SNP G/T G T
rs242290012
MGI SNP Detail
Alliance Variant		 Chr3:79134301 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 282 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs579200313
MGI SNP Detail
Alliance Variant		 Chr3:79134365 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 218 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs582094905
MGI SNP Detail
Alliance Variant		 Chr3:79134376 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 207 bp proximal
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs585434555
MGI SNP Detail
Alliance Variant		 Chr3:79134378 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 205 bp proximal
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580073712
MGI SNP Detail
Alliance Variant		 Chr3:79134382 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 201 bp proximal
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582253514
MGI SNP Detail
Alliance Variant		 Chr3:79134388 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 195 bp proximal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs585659320
MGI SNP Detail
Alliance Variant		 Chr3:79134390 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 193 bp proximal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs580096458
MGI SNP Detail
Alliance Variant		 Chr3:79134401 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 182 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs583578406
MGI SNP Detail
Alliance Variant		 Chr3:79134406 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 177 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs580384382
MGI SNP Detail
Alliance Variant		 Chr3:79134430 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 153 bp proximal
 SNP C/G C C C G C C C G G G G G G G C G C C G C C G C C C C G G G C C
rs583250023
MGI SNP Detail
Alliance Variant		 Chr3:79134438 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 145 bp proximal
 SNP C/G G G G G G G G G C G C G C G G G
rs586756561
MGI SNP Detail
Alliance Variant		 Chr3:79134442 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 141 bp proximal
 SNP C/G C C C G G G G C C G G G G G G G G C C G G G C C G C G C G C C G C C G G G G G G G C C G G
rs581189186
MGI SNP Detail
Alliance Variant		 Chr3:79134454 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 129 bp proximal
 SNP C/G G G G G C C C C G G G C C C C C C C G G C C C G G G C G C C G G C G G C C C C C C C G G C
rs584676268
MGI SNP Detail
Alliance Variant		 Chr3:79134458 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 125 bp proximal
 SNP C/G G G G G C C C C G G G C C C C C C C G G C C C G G C G C G C C G G C G G C C C C C C C C G G C C C
rs586801990
MGI SNP Detail
Alliance Variant		 Chr3:79134466 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 117 bp proximal
 SNP C/G G G G G C C C C G G G C C C C C C C C G G C C C G G C G C C G C C G G C G G C C C C C C C C G G C C C
rs107854889
MGI SNP Detail
Alliance Variant		 Chr3:79134501 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 82 bp proximal
 SNP C/T T C
rs107671651
MGI SNP Detail
Alliance Variant		 Chr3:79134517 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 66 bp proximal
 SNP C/T C T
rs108190952
MGI SNP Detail
Alliance Variant		 Chr3:79134523 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 60 bp proximal
 SNP C/G C G
rs50923042
MGI SNP Detail
Alliance Variant		 Chr3:79134634 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A A A A A
rs107902105
MGI SNP Detail
Alliance Variant		 Chr3:79134650 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs108647411
MGI SNP Detail
Alliance Variant		 Chr3:79134685 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP T T T T T
rs248854977
MGI SNP Detail
Alliance Variant		 Chr3:79134687 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs218702061
MGI SNP Detail
Alliance Variant		 Chr3:79134740 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A A A
rs241714448
MGI SNP Detail
Alliance Variant		 Chr3:79134745 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP C C C
rs262816935
MGI SNP Detail
Alliance Variant		 Chr3:79134746 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs108438495
MGI SNP Detail
Alliance Variant		 Chr3:79134752 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP T T T T T
rs249822256
MGI SNP Detail
Alliance Variant		 Chr3:79134753 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs50932677
MGI SNP Detail
Alliance Variant		 Chr3:79134840 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP T T T T T T
rs217825298
MGI SNP Detail
Alliance Variant		 Chr3:79134863 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48596811
MGI SNP Detail
Alliance Variant		 Chr3:79134900 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A A A A A A
rs257965411
MGI SNP Detail
Alliance Variant		 Chr3:79134905 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs231615769
MGI SNP Detail
Alliance Variant		 Chr3:79134933 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31217968
MGI SNP Detail
Alliance Variant		 Chr3:79134961 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP C/T T T T T T T T T T T C T T C T T
rs265782563
MGI SNP Detail
Alliance Variant		 Chr3:79134996 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233296533
MGI SNP Detail
Alliance Variant		 Chr3:79135032 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs247568056
MGI SNP Detail
Alliance Variant		 Chr3:79135036 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30151344
MGI SNP Detail
Alliance Variant		 Chr3:79135060 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP C/G G G G G C G G G G C C G G
rs30263293
MGI SNP Detail
Alliance Variant		 Chr3:79135061 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A/C A A A C A A A
rs243896476
MGI SNP Detail
Alliance Variant		 Chr3:79135112 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213646254
MGI SNP Detail
Alliance Variant		 Chr3:79135153 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238967466
MGI SNP Detail
Alliance Variant		 Chr3:79135172 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258540400
MGI SNP Detail
Alliance Variant		 Chr3:79135187 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs31217971
MGI SNP Detail
Alliance Variant		 Chr3:79135191 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP C/T T T T T T C T T T T C T C T T
rs31731821
MGI SNP Detail
Alliance Variant		 Chr3:79135208 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 within coordinates of
 SNP A/G G G G A G G G
rs30910224
MGI SNP Detail
Alliance Variant		 Chr3:79135236 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578489 19 bp distal
 SNP A/C C C C A C
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Showing SNP(s) 1 - 100 of 139
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory