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Mouse SNP Summary
Symbol
Name
ID 		Rr578490
regulatory region 578490
MGI:8040622

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs585469897
MGI SNP Detail
Alliance Variant		 Chr3:79139064 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1842 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33863163
MGI SNP Detail
Alliance Variant		 Chr3:79139133 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1773 bp proximal
 SNP A/T A T T A
rs216381118
MGI SNP Detail
Alliance Variant		 Chr3:79139189 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1717 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579752194
MGI SNP Detail
Alliance Variant		 Chr3:79139239 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1667 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs582448218
MGI SNP Detail
Alliance Variant		 Chr3:79139279 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1627 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs585974818
MGI SNP Detail
Alliance Variant		 Chr3:79139285 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1621 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A
rs225825471
MGI SNP Detail
Alliance Variant		 Chr3:79139335 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1571 bp proximal
 SNP A/T T A
rs52036303
MGI SNP Detail
Alliance Variant		 Chr3:79139380 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1526 bp proximal
 SNP A/T A T
rs217135431
MGI SNP Detail
Alliance Variant		 Chr3:79139439 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1467 bp proximal
 SNP C/T C T
rs46853669
MGI SNP Detail
Alliance Variant		 Chr3:79139507 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1399 bp proximal
 SNP A/G A G
rs51414618
MGI SNP Detail
Alliance Variant		 Chr3:79139509 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1397 bp proximal
 SNP A/G G A
rs580515979
MGI SNP Detail
Alliance Variant		 Chr3:79139542 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1364 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584033054
MGI SNP Detail
Alliance Variant		 Chr3:79139550 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1356 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs587472205
MGI SNP Detail
Alliance Variant		 Chr3:79139553 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1353 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C G
rs52426199
MGI SNP Detail
Alliance Variant		 Chr3:79139706 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1200 bp proximal
 SNP C/T C C T T C
rs241333001
MGI SNP Detail
Alliance Variant		 Chr3:79139710 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1196 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs52339175
MGI SNP Detail
Alliance Variant		 Chr3:79139749 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1157 bp proximal
 SNP C/G C G G C
rs52495509
MGI SNP Detail
Alliance Variant		 Chr3:79139759 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1147 bp proximal
 SNP A/G G G A A A G
rs579588239
MGI SNP Detail
Alliance Variant		 Chr3:79139765 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1141 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs52389760
MGI SNP Detail
Alliance Variant		 Chr3:79139769 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1137 bp proximal
 SNP A/T T T A A T
rs52344286
MGI SNP Detail
Alliance Variant		 Chr3:79139771 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1135 bp proximal
 SNP G/T G G T T G
rs52403768
MGI SNP Detail
Alliance Variant		 Chr3:79139827 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1079 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs243054542
MGI SNP Detail
Alliance Variant		 Chr3:79139835 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1071 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs265258281
MGI SNP Detail
Alliance Variant		 Chr3:79139854 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1052 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs52307397
MGI SNP Detail
Alliance Variant		 Chr3:79139867 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1039 bp proximal
 SNP G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs52224449
MGI SNP Detail
Alliance Variant		 Chr3:79139872 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1034 bp proximal
 SNP C/T T T C T T
rs258756945
MGI SNP Detail
Alliance Variant		 Chr3:79139880 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 1026 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229023324
MGI SNP Detail
Alliance Variant		 Chr3:79139948 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 958 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs31563503
MGI SNP Detail
Alliance Variant		 Chr3:79140001 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 905 bp proximal
 SNP A/G G G A A G
rs30563691
MGI SNP Detail
Alliance Variant		 Chr3:79140030 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 876 bp proximal
 SNP C/G G G C C G
rs230672098
MGI SNP Detail
Alliance Variant		 Chr3:79140033 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 873 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31212457
MGI SNP Detail
Alliance Variant		 Chr3:79140056 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 850 bp proximal
 SNP A/G G G G A G G A A A G A G A
rs216624259
MGI SNP Detail
Alliance Variant		 Chr3:79140206 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 700 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs238996737
MGI SNP Detail
Alliance Variant		 Chr3:79140227 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 679 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254707203
MGI SNP Detail
Alliance Variant		 Chr3:79140235 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 671 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217639562
MGI SNP Detail
Alliance Variant		 Chr3:79140242 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 664 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31236773
MGI SNP Detail
Alliance Variant		 Chr3:79140243 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 663 bp proximal
 SNP C/T T T C C C T
rs250522561
MGI SNP Detail
Alliance Variant		 Chr3:79140244 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 662 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222618338
MGI SNP Detail
Alliance Variant		 Chr3:79140278 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 628 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs245954073
MGI SNP Detail
Alliance Variant		 Chr3:79140298 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 608 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs257870872
MGI SNP Detail
Alliance Variant		 Chr3:79140356 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 550 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T G
rs224137745
MGI SNP Detail
Alliance Variant		 Chr3:79140515 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 391 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31572483
MGI SNP Detail
Alliance Variant		 Chr3:79140534 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 372 bp proximal
 SNP A/T A A T T T A
rs31212459
MGI SNP Detail
Alliance Variant		 Chr3:79140553 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 353 bp proximal
 SNP C/T C C C C T T C T T C T C T
rs31169336
MGI SNP Detail
Alliance Variant		 Chr3:79140599 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 307 bp proximal
 SNP A/T A A A T A A T A T A A T T A A T A T
rs235641928
MGI SNP Detail
Alliance Variant		 Chr3:79140633 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 273 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254348101
MGI SNP Detail
Alliance Variant		 Chr3:79140637 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 269 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30559828
MGI SNP Detail
Alliance Variant		 Chr3:79140643 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 263 bp proximal
 SNP A/G G G A A G
rs31488826
MGI SNP Detail
Alliance Variant		 Chr3:79140661 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 245 bp proximal
 SNP A/G G G A A G
rs31212463
MGI SNP Detail
Alliance Variant		 Chr3:79140708 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 198 bp proximal
 SNP C/T C C C T C C C C C T C C C C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs46009430
MGI SNP Detail
Alliance Variant		 Chr3:79140760 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 146 bp proximal
 SNP C/T C T
rs586643015
MGI SNP Detail
Alliance Variant		 Chr3:79140766 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 140 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31213205
MGI SNP Detail
Alliance Variant		 Chr3:79140863 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 43 bp proximal
 SNP A/G G G G G G G G G G G G G G A
rs217649639
MGI SNP Detail
Alliance Variant		 Chr3:79140883 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 23 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31213207
MGI SNP Detail
Alliance Variant		 Chr3:79140887 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 19 bp proximal
 SNP G/T G G G T G G G G G T T G T G T
rs31213209
MGI SNP Detail
Alliance Variant		 Chr3:79140937 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP A/T T T T A T T T T A A T A T A
rs580945615
MGI SNP Detail
Alliance Variant		 Chr3:79140958 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP A/G G G G A A A A G G G G A A A A A A G G G A A A G G A G A A G A A G G A G G A A A A A A A A G G A A A
rs583610360
MGI SNP Detail
Alliance Variant		 Chr3:79140968 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP G/T G T T T T G G G T T T T T T G G T T T T G T T T G T G T T T T T T T T G T T T
rs52080845
MGI SNP Detail
Alliance Variant		 Chr3:79140978 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP T T T
rs214566294
MGI SNP Detail
Alliance Variant		 Chr3:79141013 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP A/G G A
rs580859156
MGI SNP Detail
Alliance Variant		 Chr3:79141056 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs31213211
MGI SNP Detail
Alliance Variant		 Chr3:79141076 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP C/T T T T T T C T T C T T C T
rs31213213
MGI SNP Detail
Alliance Variant		 Chr3:79141115 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP C/T C C T C T C C T T C T C T
rs49798436
MGI SNP Detail
Alliance Variant		 Chr3:79141135 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP C C C
rs31214075
MGI SNP Detail
Alliance Variant		 Chr3:79141227 4921511C10Rik within coordinates of
B930012P20Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP A/G A A G A A G G A A G G A A G A G
rs31214077
MGI SNP Detail
Alliance Variant		 Chr3:79141438 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP A/G A A A G A A A G A A G G A A G A G
rs243788300
MGI SNP Detail
Alliance Variant		 Chr3:79141513 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs265406901
MGI SNP Detail
Alliance Variant		 Chr3:79141607 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31214079
MGI SNP Detail
Alliance Variant		 Chr3:79141611 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP A/C A A A C A A A C A A C C A C A C
rs248351290
MGI SNP Detail
Alliance Variant		 Chr3:79141619 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T C
rs261497078
MGI SNP Detail
Alliance Variant		 Chr3:79141620 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs31214081
MGI SNP Detail
Alliance Variant		 Chr3:79141621 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 within coordinates of
 SNP C/T C C C T C C ? C C T T C C T C T
rs244520009
MGI SNP Detail
Alliance Variant		 Chr3:79141705 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 11 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs214080251
MGI SNP Detail
Alliance Variant		 Chr3:79141706 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 12 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs50186684
MGI SNP Detail
Alliance Variant		 Chr3:79141740 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 46 bp distal
 SNP A/C A C C A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs46014140
MGI SNP Detail
Alliance Variant		 Chr3:79141745 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 51 bp distal
 SNP C/G C C G G C
rs217203891
MGI SNP Detail
Alliance Variant		 Chr3:79141759 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 65 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233569699
MGI SNP Detail
Alliance Variant		 Chr3:79141768 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 74 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A G
rs47971119
MGI SNP Detail
Alliance Variant		 Chr3:79141777 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 83 bp distal
 SNP A/G A A G G A
rs49989538
MGI SNP Detail
Alliance Variant		 Chr3:79141778 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 84 bp distal
 SNP C/T T T C C T
rs229928308
MGI SNP Detail
Alliance Variant		 Chr3:79141807 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 113 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T C
rs31214083
MGI SNP Detail
Alliance Variant		 Chr3:79141820 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 126 bp distal
 SNP C/T C C C C T C T C C C C T
rs222356031
MGI SNP Detail
Alliance Variant		 Chr3:79141871 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 177 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G A
rs246554919
MGI SNP Detail
Alliance Variant		 Chr3:79141936 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 242 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263026756
MGI SNP Detail
Alliance Variant		 Chr3:79141950 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 256 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A G
rs221455662
MGI SNP Detail
Alliance Variant		 Chr3:79141976 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 282 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs31214925
MGI SNP Detail
Alliance Variant		 Chr3:79141985 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 291 bp distal
 SNP C/T C C T C C C T C C T C C C C T
rs31214927
MGI SNP Detail
Alliance Variant		 Chr3:79142029 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 335 bp distal
 SNP A/C C C C C C C C C C C A C C A C
rs31214929
MGI SNP Detail
Alliance Variant		 Chr3:79142094 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 400 bp distal
 SNP A/G G G G A G G G A G G A A G G A G A
rs250206851
MGI SNP Detail
Alliance Variant		 Chr3:79142113 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 419 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265133615
MGI SNP Detail
Alliance Variant		 Chr3:79142118 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 424 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C A
rs231077262
MGI SNP Detail
Alliance Variant		 Chr3:79142130 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 436 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T C
rs257435202
MGI SNP Detail
Alliance Variant		 Chr3:79142133 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 439 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs52389897
MGI SNP Detail
Alliance Variant		 Chr3:79142208 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 514 bp distal
 SNP C/T T T C C T
rs228572611
MGI SNP Detail
Alliance Variant		 Chr3:79142234 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 540 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T C
rs31214931
MGI SNP Detail
Alliance Variant		 Chr3:79142254 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 560 bp distal
 SNP C/T T T T T T T T T C T C T
rs217330687
MGI SNP Detail
Alliance Variant		 Chr3:79142269 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 575 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T C
rs229938113
MGI SNP Detail
Alliance Variant		 Chr3:79142272 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 578 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A G
rs256154333
MGI SNP Detail
Alliance Variant		 Chr3:79142273 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 579 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A C
rs584208683
MGI SNP Detail
Alliance Variant		 Chr3:79142275 4921511C10Rik within coordinates of
Gm66403 within coordinates of
Rapgef2 Intron
Rr578490 581 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A G
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Showing SNP(s) 1 - 100 of 132
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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