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Mouse SNP Summary
Symbol
Name
ID
Rr580377
regulatory region 580377
MGI:8042509

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228328972
MGI SNP Detail
Alliance Variant
Chr3:90396473 Rr580377 1984 bp proximal
Snapin mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs240853136
MGI SNP Detail
Alliance Variant
Chr3:90396486 Rr580377 1971 bp proximal
Snapin mRNA-UTR
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs265312677
MGI SNP Detail
Alliance Variant
Chr3:90396541 Rr580377 1916 bp proximal
Snapin mRNA-UTR
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs229981999
MGI SNP Detail
Alliance Variant
Chr3:90396649 Rr580377 1808 bp proximal
Snapin mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs47392951
MGI SNP Detail
Alliance Variant
Chr3:90396654 Rr580377 1803 bp proximal
Snapin mRNA-UTR
SNP A/G G G G G G A G G G G G G G
rs13469854
MGI SNP Detail
Alliance Variant
Chr3:90396708 Rr580377 1749 bp proximal
Snapin mRNA-UTR
SNP C/T C T
rs13469855
MGI SNP Detail
Alliance Variant
Chr3:90396738 Rr580377 1719 bp proximal
Snapin mRNA-UTR
SNP C/G C C C C C G C C G C C G G
rs49326554
MGI SNP Detail
Alliance Variant
Chr3:90396739 Rr580377 1718 bp proximal
Snapin mRNA-UTR
SNP G/T T T T T G T T T T
rs246609741
MGI SNP Detail
Alliance Variant
Chr3:90396928 Rr580377 1529 bp proximal
Snapin Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs215773600
MGI SNP Detail
Alliance Variant
Chr3:90397105 Rr580377 1352 bp proximal
Snapin Intron
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs232851538
MGI SNP Detail
Alliance Variant
Chr3:90397177 Rr580377 1280 bp proximal
Snapin Intron
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257795197
MGI SNP Detail
Alliance Variant
Chr3:90397181 Rr580377 1276 bp proximal
Snapin Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213830788
MGI SNP Detail
Alliance Variant
Chr3:90397225 Rr580377 1232 bp proximal
Snapin Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235206058
MGI SNP Detail
Alliance Variant
Chr3:90397262 Rr580377 1195 bp proximal
Snapin Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs260621585
MGI SNP Detail
Alliance Variant
Chr3:90397264 Rr580377 1193 bp proximal
Snapin Intron
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs580752048
MGI SNP Detail
Alliance Variant
Chr3:90397282 Rr580377 1175 bp proximal
Snapin Intron
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584154604
MGI SNP Detail
Alliance Variant
Chr3:90397285 Rr580377 1172 bp proximal
Snapin Intron
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs578412328
MGI SNP Detail
Alliance Variant
Chr3:90397288 Rr580377 1169 bp proximal
Snapin Intron
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs581194790
MGI SNP Detail
Alliance Variant
Chr3:90397340 Rr580377 1117 bp proximal
Snapin Intron
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs223290912
MGI SNP Detail
Alliance Variant
Chr3:90397385 Rr580377 1072 bp proximal
Snapin Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs31471251
MGI SNP Detail
Alliance Variant
Chr3:90397408 Rr580377 1049 bp proximal
Snapin Intron
SNP C/T T T T C T C
rs47237955
MGI SNP Detail
Alliance Variant
Chr3:90397741 Rr580377 716 bp proximal
Snapin Intron
SNP C/T C C C C C C C C T C C C
rs46954634
MGI SNP Detail
Alliance Variant
Chr3:90397761 Rr580377 696 bp proximal
Snapin Intron
SNP A/T A A A A T A A A A A A A
rs47267163
MGI SNP Detail
Alliance Variant
Chr3:90397769 Rr580377 688 bp proximal
Snapin Intron
SNP A/G G G G G G G G G A G G G G
rs50137931
MGI SNP Detail
Alliance Variant
Chr3:90397793 Rr580377 664 bp proximal
Snapin Intron
SNP C/T T T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222111120
MGI SNP Detail
Alliance Variant
Chr3:90397820 Rr580377 637 bp proximal
Snapin Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46674175
MGI SNP Detail
Alliance Variant
Chr3:90397872 Rr580377 585 bp proximal
Snapin Coding-NonSynonymous
Snapin Intron
SNP A/T A A A A A A A A T A A A A
rs240891014
MGI SNP Detail
Alliance Variant
Chr3:90397979 Rr580377 478 bp proximal
Snapin Intron
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs262942329
MGI SNP Detail
Alliance Variant
Chr3:90397980 Rr580377 477 bp proximal
Snapin Intron
SNP A/G A A A A A A G G A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A G A A A A A A A A
rs230657885
MGI SNP Detail
Alliance Variant
Chr3:90397986 Rr580377 471 bp proximal
Snapin Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs49555307
MGI SNP Detail
Alliance Variant
Chr3:90398045 Rr580377 412 bp proximal
Snapin Intron
Tssr34232 within coordinates of
SNP G/T T T T T T T T G T T T
rs264665243
MGI SNP Detail
Alliance Variant
Chr3:90398047 Rr580377 410 bp proximal
Snapin Intron
Tssr34232 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs229401781
MGI SNP Detail
Alliance Variant
Chr3:90398072 Cpgi13464 within coordinates of
Rr580377 385 bp proximal
Snapin Intron
Tssr34232 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246833026
MGI SNP Detail
Alliance Variant
Chr3:90398095 Cpgi13464 within coordinates of
Rr580377 362 bp proximal
Snapin Intron
Tssr34233 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs215813847
MGI SNP Detail
Alliance Variant
Chr3:90398119 Cpgi13464 within coordinates of
Rr580377 338 bp proximal
Snapin Intron
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs226689117
MGI SNP Detail
Chr3:90398380 Cpgi13464 within coordinates of
Rr397812 within coordinates of
Rr580375 within coordinates of
Rr580377 77 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A G A A A A
rs256118268
MGI SNP Detail
Chr3:90398436 Cpgi13464 within coordinates of
Rr397812 within coordinates of
Rr580375 within coordinates of
Rr580377 21 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs213783072
MGI SNP Detail
Chr3:90398472 Cpgi13464 within coordinates of
Rr397812 within coordinates of
Rr580375 within coordinates of
Rr580377 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs237216959
MGI SNP Detail
Chr3:90398515 Rr397812 within coordinates of
Rr580375 within coordinates of
Rr580377 37 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs584584887
MGI SNP Detail
Chr3:90398538 Rr397812 within coordinates of
Rr580375 within coordinates of
Rr580377 60 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs579031923
MGI SNP Detail
Chr3:90398546 Rr397812 within coordinates of
Rr580375 within coordinates of
Rr580377 68 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs586357505
MGI SNP Detail
Chr3:90398554 Rr397812 within coordinates of
Rr580375 within coordinates of
Rr580377 76 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs579362979
MGI SNP Detail
Chr3:90398623 Rr580375 within coordinates of
Rr580377 145 bp distal
SNP C/T T T T T T C T T T T T T T T T T T T T T T T T T T C T T T T T T T T C T T T T
rs585222512
MGI SNP Detail
Chr3:90398627 Rr580375 within coordinates of
Rr580377 149 bp distal
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579541122
MGI SNP Detail
Chr3:90398643 Rr580375 within coordinates of
Rr580377 165 bp distal
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582294567
MGI SNP Detail
Chr3:90398647 Rr580375 within coordinates of
Rr580377 169 bp distal
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs585785496
MGI SNP Detail
Chr3:90398657 Rr580375 within coordinates of
Rr580377 179 bp distal
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs582353729
MGI SNP Detail
Chr3:90398660 Rr580375 within coordinates of
Rr580377 182 bp distal
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs255213154
MGI SNP Detail
Chr3:90398714 Rr580375 within coordinates of
Rr580377 236 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs583368089
MGI SNP Detail
Chr3:90398785 Rr580375 within coordinates of
Rr580377 307 bp distal
Rr580378 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217066679
MGI SNP Detail
Chr3:90398814 Rr580375 within coordinates of
Rr580377 336 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs235364019
MGI SNP Detail
Chr3:90398839 Rr580377 361 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253357979
MGI SNP Detail
Chr3:90398999 Rr580377 521 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs222147960
MGI SNP Detail
Chr3:90399099 Rr580377 621 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs238191657
MGI SNP Detail
Chr3:90399245 Rr580377 767 bp distal
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs217385870
MGI SNP Detail
Chr3:90399250 Rr580377 772 bp distal
SNP C/T C T
rs587217597
MGI SNP Detail
Chr3:90399413 Rr580377 935 bp distal
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs580514286
MGI SNP Detail
Chr3:90399414 Rr580377 936 bp distal
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs47493124
MGI SNP Detail
Chr3:90399786 Rr580377 1308 bp distal
SNP A/T A A A A A A T T A A A A A A A A A A A A A A A T T A T A T A A A A T A T T A T A A T T T T A T A A A T T
rs245451130
MGI SNP Detail
Chr3:90399848 Rr580377 1370 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs261579715
MGI SNP Detail
Chr3:90400027 Rr580377 1549 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222723973
MGI SNP Detail
Chr3:90400028 Rr580377 1550 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241009330
MGI SNP Detail
Chr3:90400038 Rr580377 1560 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs258337756
MGI SNP Detail
Chr3:90400108 Rr580377 1630 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs226989148
MGI SNP Detail
Chr3:90400156 Rr580377 1678 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251422806
MGI SNP Detail
Chr3:90400184 Rr580377 1706 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs52444537
MGI SNP Detail
Chr3:90400197 Rr580377 1719 bp distal
SNP G/T T G T
rs228740520
MGI SNP Detail
Chr3:90400253 Rr580377 1775 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A G A A A A A A A G A A A A
rs52459963
MGI SNP Detail
Chr3:90400264 Rr580377 1786 bp distal
SNP A/G A G
rs217102351
MGI SNP Detail
Chr3:90400295 Rr580377 1817 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235227763
MGI SNP Detail
Chr3:90400392 Rr580377 1914 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs246944669
MGI SNP Detail
Chr3:90400423 Rr580377 1945 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A G A A A A A A A G A A A A
rs215007583
MGI SNP Detail
Chr3:90400432 Rr580377 1954 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs238791987
MGI SNP Detail
Chr3:90400433 Rr580377 1955 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
<< first < prev1 next > last >>
Showing SNP(s) 1 - 74 of 74

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory