About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Rr580385
regulatory region 580385
MGI:8042517

<< first < prev1 next > last >>
Showing SNP(s) 1 - 96 of 96

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242997297
MGI SNP Detail
Alliance Variant		 Chr3:90419295 Rr375350 within coordinates of
Rr580385 1973 bp proximal
S100a1 Coding-NonSynonymous
S100a1 Intron
S100a1 Splice-Site
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G C G G G G
rs253639648
MGI SNP Detail
Alliance Variant		 Chr3:90419318 Rr375350 within coordinates of
Rr580385 1950 bp proximal
S100a1 Coding-Synonymous
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216744658
MGI SNP Detail
Alliance Variant		 Chr3:90419345 Rr375350 within coordinates of
Rr580385 1923 bp proximal
S100a1 Coding-Synonymous
Tssr34241 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237652680
MGI SNP Detail
Alliance Variant		 Chr3:90419348 Rr375350 within coordinates of
Rr580385 1920 bp proximal
S100a1 Coding-Synonymous
Tssr34241 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
rs251835477
MGI SNP Detail
Alliance Variant		 Chr3:90419553 Rr375350 within coordinates of
Rr580385 1715 bp proximal
S100a1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs219365867
MGI SNP Detail
Alliance Variant		 Chr3:90419565 Rr375350 within coordinates of
Rr580385 1703 bp proximal
S100a1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232159948
MGI SNP Detail
Alliance Variant		 Chr3:90419641 Rr375350 within coordinates of
Rr580385 1627 bp proximal
S100a1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs250705765
MGI SNP Detail
Alliance Variant		 Chr3:90419671 Rr375350 within coordinates of
Rr580385 1597 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218505180
MGI SNP Detail
Alliance Variant		 Chr3:90419772 Rr375350 within coordinates of
Rr580385 1496 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs251831338
MGI SNP Detail
Alliance Variant		 Chr3:90419776 Rr375350 within coordinates of
Rr580385 1492 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264062415
MGI SNP Detail
Alliance Variant		 Chr3:90419825 Rr375350 within coordinates of
Rr580385 1443 bp proximal
S100a1 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs225248710
MGI SNP Detail
Alliance Variant		 Chr3:90419835 Rr375350 within coordinates of
Rr580385 1433 bp proximal
S100a1 Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs51855984
MGI SNP Detail
Alliance Variant		 Chr3:90419915 Rr375350 within coordinates of
Rr580385 1353 bp proximal
S100a1 Intron
 SNP C/T T T C T C
rs583892379
MGI SNP Detail
Alliance Variant		 Chr3:90419921 Rr375350 within coordinates of
Rr580385 1347 bp proximal
S100a1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs256568141
MGI SNP Detail
Alliance Variant		 Chr3:90420011 Rr375350 within coordinates of
Rr580385 1257 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs225463057
MGI SNP Detail
Alliance Variant		 Chr3:90420092 Rr375350 within coordinates of
Rr580385 1176 bp proximal
S100a1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs242989400
MGI SNP Detail
Alliance Variant		 Chr3:90420176 Rr375350 within coordinates of
Rr580385 1092 bp proximal
S100a1 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs253758873
MGI SNP Detail
Alliance Variant		 Chr3:90420230 Rr375350 within coordinates of
Rr580385 1038 bp proximal
S100a1 Intron
 SNP G/T T T T T T T T T T T T T G T T T T T G T
rs31053023
MGI SNP Detail
Alliance Variant		 Chr3:90420283 Rr375350 within coordinates of
Rr580385 985 bp proximal
S100a1 Intron
 SNP C/T T T T C T C
rs259174465
MGI SNP Detail
Alliance Variant		 Chr3:90420302 Rr375350 within coordinates of
Rr580385 966 bp proximal
S100a1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs216638825
MGI SNP Detail
Alliance Variant		 Chr3:90420344 Rr375350 within coordinates of
Rr580385 924 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G G A G G G G
rs48175508
MGI SNP Detail
Alliance Variant		 Chr3:90420345 Rr375350 within coordinates of
Rr580385 923 bp proximal
S100a1 Intron
 SNP C/T C C C T C C
rs231800539
MGI SNP Detail
Alliance Variant		 Chr3:90420369 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 899 bp proximal
S100a1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs245417235
MGI SNP Detail
Alliance Variant		 Chr3:90420392 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 876 bp proximal
S100a1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213469430
MGI SNP Detail
Alliance Variant		 Chr3:90420503 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 765 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230363067
MGI SNP Detail
Alliance Variant		 Chr3:90420507 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 761 bp proximal
S100a1 Intron
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G C G G G G G G G G G G
rs250750043
MGI SNP Detail
Alliance Variant		 Chr3:90420555 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 713 bp proximal
S100a1 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs212533625
MGI SNP Detail
Alliance Variant		 Chr3:90420560 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 708 bp proximal
S100a1 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs240719806
MGI SNP Detail
Alliance Variant		 Chr3:90420622 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 646 bp proximal
S100a1 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs263999823
MGI SNP Detail
Alliance Variant		 Chr3:90420758 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 510 bp proximal
S100a1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225327693
MGI SNP Detail
Alliance Variant		 Chr3:90420813 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 455 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs247926090
MGI SNP Detail
Alliance Variant		 Chr3:90420897 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 371 bp proximal
S100a1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250536420
MGI SNP Detail
Alliance Variant		 Chr3:90420969 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 299 bp proximal
S100a1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs219528771
MGI SNP Detail
Alliance Variant		 Chr3:90420973 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 295 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs236842399
MGI SNP Detail
Alliance Variant		 Chr3:90421011 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 257 bp proximal
S100a1 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs253792023
MGI SNP Detail
Alliance Variant		 Chr3:90421080 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 188 bp proximal
S100a1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs234790954
MGI SNP Detail
Alliance Variant		 Chr3:90421081 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 187 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247292985
MGI SNP Detail
Alliance Variant		 Chr3:90421084 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 184 bp proximal
S100a1 Intron
 SNP A/C/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A T A A A A
rs265715327
MGI SNP Detail
Alliance Variant		 Chr3:90421088 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 180 bp proximal
S100a1 Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs231615611
MGI SNP Detail
Alliance Variant		 Chr3:90421116 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 152 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G G G G G G G G G G G G G G
rs245453352
MGI SNP Detail
Alliance Variant		 Chr3:90421241 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 27 bp proximal
S100a1 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs213313160
MGI SNP Detail
Alliance Variant		 Chr3:90421285 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 within coordinates of
S100a1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224767415
MGI SNP Detail
Alliance Variant		 Chr3:90421294 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 5 bp distal
S100a1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243278083
MGI SNP Detail
Alliance Variant		 Chr3:90421389 Rr580384 within coordinates of
Rr580385 100 bp distal
Rr580386 within coordinates of
S100a1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218854593
MGI SNP Detail
Alliance Variant		 Chr3:90421443 Rr580384 within coordinates of
Rr580385 154 bp distal
S100a1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs243105223
MGI SNP Detail
Alliance Variant		 Chr3:90421526 Cpgi13466 within coordinates of
Rr580384 within coordinates of
Rr580385 237 bp distal
S100a1 mRNA-UTR
 SNP G/T G T
rs212350516
MGI SNP Detail
Alliance Variant		 Chr3:90421532 Cpgi13466 within coordinates of
Rr580384 within coordinates of
Rr580385 243 bp distal
S100a1 mRNA-UTR
 SNP A/G A G
rs231043087
MGI SNP Detail
Alliance Variant		 Chr3:90421536 Cpgi13466 within coordinates of
Rr580384 within coordinates of
Rr580385 247 bp distal
S100a1 mRNA-UTR
 SNP A/G A G
rs233156834
MGI SNP Detail
Alliance Variant		 Chr3:90421611 Cpgi13466 within coordinates of
Rr580385 322 bp distal
Rr580387 within coordinates of
S100a1 mRNA-UTR
S100a13 mRNA-UTR
Tssr34242 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs578452993
MGI SNP Detail
Alliance Variant		 Chr3:90421614 Cpgi13466 within coordinates of
Rr580385 325 bp distal
Rr580387 within coordinates of
S100a1 mRNA-UTR
S100a13 mRNA-UTR
Tssr34242 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250576678
MGI SNP Detail
Alliance Variant		 Chr3:90421720 Rr580385 431 bp distal
Rr580389 within coordinates of
S100a13 mRNA-UTR
Tssr34245 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219399792
MGI SNP Detail
Alliance Variant		 Chr3:90421875 Rr580385 586 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs236880752
MGI SNP Detail
Alliance Variant		 Chr3:90421883 Rr580385 594 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs261071328
MGI SNP Detail
Alliance Variant		 Chr3:90421932 Rr580385 643 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226896405
MGI SNP Detail
Alliance Variant		 Chr3:90422026 Rr580385 737 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250026804
MGI SNP Detail
Alliance Variant		 Chr3:90422035 Rr580385 746 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs263486916
MGI SNP Detail
Alliance Variant		 Chr3:90422045 Rr580385 756 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs232127063
MGI SNP Detail
Alliance Variant		 Chr3:90422140 Rr580385 851 bp distal
Rr580390 within coordinates of
S100a13 Intron
S100a13 mRNA-UTR
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs239644630
MGI SNP Detail
Alliance Variant		 Chr3:90422145 Rr580385 856 bp distal
Rr580390 within coordinates of
S100a13 Intron
S100a13 mRNA-UTR
S100a13 Splice-Site
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs257241146
MGI SNP Detail
Alliance Variant		 Chr3:90422161 Rr580385 872 bp distal
Rr580390 within coordinates of
S100a13 mRNA-UTR
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs224710702
MGI SNP Detail
Alliance Variant		 Chr3:90422337 Rr580385 1048 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T C T T T T T C T T T T
rs243204076
MGI SNP Detail
Alliance Variant		 Chr3:90422339 Rr580385 1050 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs266084755
MGI SNP Detail
Alliance Variant		 Chr3:90422340 Rr580385 1051 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs232898748
MGI SNP Detail
Alliance Variant		 Chr3:90422368 Rr580385 1079 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259525215
MGI SNP Detail
Alliance Variant		 Chr3:90422381 Rr580385 1092 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217053135
MGI SNP Detail
Alliance Variant		 Chr3:90422456 Rr580385 1167 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs233193563
MGI SNP Detail
Alliance Variant		 Chr3:90422458 Rr580385 1169 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs244858145
MGI SNP Detail
Alliance Variant		 Chr3:90422498 Rr580385 1209 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs213986754
MGI SNP Detail
Alliance Variant		 Chr3:90422503 Rr580385 1214 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230815719
MGI SNP Detail
Alliance Variant		 Chr3:90422516 Rr580385 1227 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255549161
MGI SNP Detail
Alliance Variant		 Chr3:90422558 Rr580385 1269 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227392348
MGI SNP Detail
Alliance Variant		 Chr3:90422654 Rr580385 1365 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A T A A A A A A A A A A
rs580639127
MGI SNP Detail
Alliance Variant		 Chr3:90422666 Rr580385 1377 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs239638377
MGI SNP Detail
Alliance Variant		 Chr3:90422668 Rr580385 1379 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T C T T T T T C T T T T
rs263276146
MGI SNP Detail
Alliance Variant		 Chr3:90422669 Rr580385 1380 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220868539
MGI SNP Detail
Alliance Variant		 Chr3:90422671 Rr580385 1382 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T T A A A A A T A T A A A A A A A A A A
rs239573503
MGI SNP Detail
Alliance Variant		 Chr3:90422677 Rr580385 1388 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs257564670
MGI SNP Detail
Alliance Variant		 Chr3:90422695 Rr580385 1406 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218829155
MGI SNP Detail
Alliance Variant		 Chr3:90422743 Rr580385 1454 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243659247
MGI SNP Detail
Alliance Variant		 Chr3:90422746 Rr580385 1457 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs264245026
MGI SNP Detail
Alliance Variant		 Chr3:90422758 Rr580385 1469 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T C T T T T T C T T T T
rs233828230
MGI SNP Detail
Alliance Variant		 Chr3:90422760 Rr580385 1471 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs252864791
MGI SNP Detail
Alliance Variant		 Chr3:90422767 Rr580385 1478 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T T C C C C C T C T C C C C C C C C C C
rs265788478
MGI SNP Detail
Alliance Variant		 Chr3:90422832 Rr580385 1543 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T C T T T T T T T T T T
rs227123543
MGI SNP Detail
Alliance Variant		 Chr3:90422847 Rr580385 1558 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G G C C C C C G C G C C C C C C C C C C
rs244782976
MGI SNP Detail
Alliance Variant		 Chr3:90422856 Rr580385 1567 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T C T T T T T C T T T T
rs214022207
MGI SNP Detail
Alliance Variant		 Chr3:90422906 Rr580385 1617 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs231014813
MGI SNP Detail
Alliance Variant		 Chr3:90422967 Rr580385 1678 bp distal
S100a13 Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs252777252
MGI SNP Detail
Alliance Variant		 Chr3:90422982 Rr580385 1693 bp distal
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs219225764
MGI SNP Detail
Alliance Variant		 Chr3:90423044 Rr580385 1755 bp distal
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242316856
MGI SNP Detail
Alliance Variant		 Chr3:90423068 Rr580385 1779 bp distal
S100a13 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259671356
MGI SNP Detail
Alliance Variant		 Chr3:90423094 Rr580385 1805 bp distal
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs221158610
MGI SNP Detail
Alliance Variant		 Chr3:90423112 Rr580385 1823 bp distal
S100a13 Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs584350542
MGI SNP Detail
Alliance Variant		 Chr3:90423162 Rr580385 1873 bp distal
S100a13 mRNA-UTR
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs232677610
MGI SNP Detail
Alliance Variant		 Chr3:90423208 Rr580385 1919 bp distal
S100a13 Coding-Synonymous
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs251097758
MGI SNP Detail
Alliance Variant		 Chr3:90423209 Rr580385 1920 bp distal
S100a13 Coding-NonSynonymous
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A C A A A A A C A A A A A A A A A A A A A A C A A A A
<< first < prev1 next > last >>
Showing SNP(s) 1 - 96 of 96
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
Building initial tooltip...