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Mouse SNP Summary
Symbol
Name
ID 		Rr580389
regulatory region 580389
MGI:8042521

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218505180
MGI SNP Detail
Alliance Variant		 Chr3:90419772 Rr375350 within coordinates of
Rr580389 1917 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs251831338
MGI SNP Detail
Alliance Variant		 Chr3:90419776 Rr375350 within coordinates of
Rr580389 1913 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264062415
MGI SNP Detail
Alliance Variant		 Chr3:90419825 Rr375350 within coordinates of
Rr580389 1864 bp proximal
S100a1 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs225248710
MGI SNP Detail
Alliance Variant		 Chr3:90419835 Rr375350 within coordinates of
Rr580389 1854 bp proximal
S100a1 Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs51855984
MGI SNP Detail
Alliance Variant		 Chr3:90419915 Rr375350 within coordinates of
Rr580389 1774 bp proximal
S100a1 Intron
 SNP C/T T T C T C
rs583892379
MGI SNP Detail
Alliance Variant		 Chr3:90419921 Rr375350 within coordinates of
Rr580389 1768 bp proximal
S100a1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs256568141
MGI SNP Detail
Alliance Variant		 Chr3:90420011 Rr375350 within coordinates of
Rr580389 1678 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs225463057
MGI SNP Detail
Alliance Variant		 Chr3:90420092 Rr375350 within coordinates of
Rr580389 1597 bp proximal
S100a1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs242989400
MGI SNP Detail
Alliance Variant		 Chr3:90420176 Rr375350 within coordinates of
Rr580389 1513 bp proximal
S100a1 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs253758873
MGI SNP Detail
Alliance Variant		 Chr3:90420230 Rr375350 within coordinates of
Rr580389 1459 bp proximal
S100a1 Intron
 SNP G/T T T T T T T T T T T T T G T T T T T G T
rs31053023
MGI SNP Detail
Alliance Variant		 Chr3:90420283 Rr375350 within coordinates of
Rr580389 1406 bp proximal
S100a1 Intron
 SNP C/T T T T C T C
rs259174465
MGI SNP Detail
Alliance Variant		 Chr3:90420302 Rr375350 within coordinates of
Rr580389 1387 bp proximal
S100a1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs216638825
MGI SNP Detail
Alliance Variant		 Chr3:90420344 Rr375350 within coordinates of
Rr580389 1345 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G G A G G G G
rs48175508
MGI SNP Detail
Alliance Variant		 Chr3:90420345 Rr375350 within coordinates of
Rr580389 1344 bp proximal
S100a1 Intron
 SNP C/T C C C T C C
rs231800539
MGI SNP Detail
Alliance Variant		 Chr3:90420369 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 1320 bp proximal
S100a1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs245417235
MGI SNP Detail
Alliance Variant		 Chr3:90420392 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 1297 bp proximal
S100a1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213469430
MGI SNP Detail
Alliance Variant		 Chr3:90420503 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 1186 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs230363067
MGI SNP Detail
Alliance Variant		 Chr3:90420507 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 1182 bp proximal
S100a1 Intron
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G C G G G G G G G G G G
rs250750043
MGI SNP Detail
Alliance Variant		 Chr3:90420555 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 1134 bp proximal
S100a1 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs212533625
MGI SNP Detail
Alliance Variant		 Chr3:90420560 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 1129 bp proximal
S100a1 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs240719806
MGI SNP Detail
Alliance Variant		 Chr3:90420622 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 1067 bp proximal
S100a1 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs263999823
MGI SNP Detail
Alliance Variant		 Chr3:90420758 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 931 bp proximal
S100a1 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225327693
MGI SNP Detail
Alliance Variant		 Chr3:90420813 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 876 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs247926090
MGI SNP Detail
Alliance Variant		 Chr3:90420897 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 792 bp proximal
S100a1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250536420
MGI SNP Detail
Alliance Variant		 Chr3:90420969 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 720 bp proximal
S100a1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219528771
MGI SNP Detail
Alliance Variant		 Chr3:90420973 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 716 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs236842399
MGI SNP Detail
Alliance Variant		 Chr3:90421011 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 678 bp proximal
S100a1 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs253792023
MGI SNP Detail
Alliance Variant		 Chr3:90421080 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 609 bp proximal
S100a1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs234790954
MGI SNP Detail
Alliance Variant		 Chr3:90421081 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 608 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247292985
MGI SNP Detail
Alliance Variant		 Chr3:90421084 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 605 bp proximal
S100a1 Intron
 SNP A/C/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A T A A A A
rs265715327
MGI SNP Detail
Alliance Variant		 Chr3:90421088 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 601 bp proximal
S100a1 Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs231615611
MGI SNP Detail
Alliance Variant		 Chr3:90421116 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 573 bp proximal
S100a1 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G G G G G G G G G G G G G G
rs245453352
MGI SNP Detail
Alliance Variant		 Chr3:90421241 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 448 bp proximal
S100a1 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs213313160
MGI SNP Detail
Alliance Variant		 Chr3:90421285 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580385 within coordinates of
Rr580389 404 bp proximal
S100a1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224767415
MGI SNP Detail
Alliance Variant		 Chr3:90421294 Rr375350 within coordinates of
Rr580384 within coordinates of
Rr580389 395 bp proximal
S100a1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243278083
MGI SNP Detail
Alliance Variant		 Chr3:90421389 Rr580384 within coordinates of
Rr580386 within coordinates of
Rr580389 300 bp proximal
S100a1 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218854593
MGI SNP Detail
Alliance Variant		 Chr3:90421443 Rr580384 within coordinates of
Rr580389 246 bp proximal
S100a1 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs243105223
MGI SNP Detail
Alliance Variant		 Chr3:90421526 Cpgi13466 within coordinates of
Rr580384 within coordinates of
Rr580389 163 bp proximal
S100a1 mRNA-UTR
 SNP G/T G T
rs212350516
MGI SNP Detail
Alliance Variant		 Chr3:90421532 Cpgi13466 within coordinates of
Rr580384 within coordinates of
Rr580389 157 bp proximal
S100a1 mRNA-UTR
 SNP A/G A G
rs231043087
MGI SNP Detail
Alliance Variant		 Chr3:90421536 Cpgi13466 within coordinates of
Rr580384 within coordinates of
Rr580389 153 bp proximal
S100a1 mRNA-UTR
 SNP A/G A G
rs233156834
MGI SNP Detail
Alliance Variant		 Chr3:90421611 Cpgi13466 within coordinates of
Rr580387 within coordinates of
Rr580389 78 bp proximal
S100a1 mRNA-UTR
S100a13 mRNA-UTR
Tssr34242 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs578452993
MGI SNP Detail
Alliance Variant		 Chr3:90421614 Cpgi13466 within coordinates of
Rr580387 within coordinates of
Rr580389 75 bp proximal
S100a1 mRNA-UTR
S100a13 mRNA-UTR
Tssr34242 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250576678
MGI SNP Detail
Alliance Variant		 Chr3:90421720 Rr580389 within coordinates of
S100a13 mRNA-UTR
Tssr34245 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219399792
MGI SNP Detail
Alliance Variant		 Chr3:90421875 Rr580389 123 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs236880752
MGI SNP Detail
Alliance Variant		 Chr3:90421883 Rr580389 131 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs261071328
MGI SNP Detail
Alliance Variant		 Chr3:90421932 Rr580389 180 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226896405
MGI SNP Detail
Alliance Variant		 Chr3:90422026 Rr580389 274 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250026804
MGI SNP Detail
Alliance Variant		 Chr3:90422035 Rr580389 283 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs263486916
MGI SNP Detail
Alliance Variant		 Chr3:90422045 Rr580389 293 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs232127063
MGI SNP Detail
Alliance Variant		 Chr3:90422140 Rr580389 388 bp distal
Rr580390 within coordinates of
S100a13 Intron
S100a13 mRNA-UTR
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239644630
MGI SNP Detail
Alliance Variant		 Chr3:90422145 Rr580389 393 bp distal
Rr580390 within coordinates of
S100a13 Intron
S100a13 mRNA-UTR
S100a13 Splice-Site
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs257241146
MGI SNP Detail
Alliance Variant		 Chr3:90422161 Rr580389 409 bp distal
Rr580390 within coordinates of
S100a13 mRNA-UTR
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs224710702
MGI SNP Detail
Alliance Variant		 Chr3:90422337 Rr580389 585 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T C T T T T T C T T T T
rs243204076
MGI SNP Detail
Alliance Variant		 Chr3:90422339 Rr580389 587 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs266084755
MGI SNP Detail
Alliance Variant		 Chr3:90422340 Rr580389 588 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs232898748
MGI SNP Detail
Alliance Variant		 Chr3:90422368 Rr580389 616 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259525215
MGI SNP Detail
Alliance Variant		 Chr3:90422381 Rr580389 629 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217053135
MGI SNP Detail
Alliance Variant		 Chr3:90422456 Rr580389 704 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs233193563
MGI SNP Detail
Alliance Variant		 Chr3:90422458 Rr580389 706 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs244858145
MGI SNP Detail
Alliance Variant		 Chr3:90422498 Rr580389 746 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs213986754
MGI SNP Detail
Alliance Variant		 Chr3:90422503 Rr580389 751 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230815719
MGI SNP Detail
Alliance Variant		 Chr3:90422516 Rr580389 764 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255549161
MGI SNP Detail
Alliance Variant		 Chr3:90422558 Rr580389 806 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227392348
MGI SNP Detail
Alliance Variant		 Chr3:90422654 Rr580389 902 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A T A A A A A A A A A A
rs580639127
MGI SNP Detail
Alliance Variant		 Chr3:90422666 Rr580389 914 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs239638377
MGI SNP Detail
Alliance Variant		 Chr3:90422668 Rr580389 916 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T C T T T T T C T T T T
rs263276146
MGI SNP Detail
Alliance Variant		 Chr3:90422669 Rr580389 917 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220868539
MGI SNP Detail
Alliance Variant		 Chr3:90422671 Rr580389 919 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T T A A A A A T A T A A A A A A A A A A
rs239573503
MGI SNP Detail
Alliance Variant		 Chr3:90422677 Rr580389 925 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs257564670
MGI SNP Detail
Alliance Variant		 Chr3:90422695 Rr580389 943 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218829155
MGI SNP Detail
Alliance Variant		 Chr3:90422743 Rr580389 991 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243659247
MGI SNP Detail
Alliance Variant		 Chr3:90422746 Rr580389 994 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs264245026
MGI SNP Detail
Alliance Variant		 Chr3:90422758 Rr580389 1006 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T C T T T T T C T T T T
rs233828230
MGI SNP Detail
Alliance Variant		 Chr3:90422760 Rr580389 1008 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs252864791
MGI SNP Detail
Alliance Variant		 Chr3:90422767 Rr580389 1015 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T T C C C C C T C T C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265788478
MGI SNP Detail
Alliance Variant		 Chr3:90422832 Rr580389 1080 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T C T T T T T T T T T T
rs227123543
MGI SNP Detail
Alliance Variant		 Chr3:90422847 Rr580389 1095 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G G C C C C C G C G C C C C C C C C C C
rs244782976
MGI SNP Detail
Alliance Variant		 Chr3:90422856 Rr580389 1104 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T C T T T T T C T T T T
rs214022207
MGI SNP Detail
Alliance Variant		 Chr3:90422906 Rr580389 1154 bp distal
Rr580390 within coordinates of
S100a13 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs231014813
MGI SNP Detail
Alliance Variant		 Chr3:90422967 Rr580389 1215 bp distal
S100a13 Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs252777252
MGI SNP Detail
Alliance Variant		 Chr3:90422982 Rr580389 1230 bp distal
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs219225764
MGI SNP Detail
Alliance Variant		 Chr3:90423044 Rr580389 1292 bp distal
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242316856
MGI SNP Detail
Alliance Variant		 Chr3:90423068 Rr580389 1316 bp distal
S100a13 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259671356
MGI SNP Detail
Alliance Variant		 Chr3:90423094 Rr580389 1342 bp distal
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs221158610
MGI SNP Detail
Alliance Variant		 Chr3:90423112 Rr580389 1360 bp distal
S100a13 Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs584350542
MGI SNP Detail
Alliance Variant		 Chr3:90423162 Rr580389 1410 bp distal
S100a13 mRNA-UTR
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs232677610
MGI SNP Detail
Alliance Variant		 Chr3:90423208 Rr580389 1456 bp distal
S100a13 Coding-Synonymous
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs251097758
MGI SNP Detail
Alliance Variant		 Chr3:90423209 Rr580389 1457 bp distal
S100a13 Coding-NonSynonymous
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A C A A A A A C A A A A A A A A A A A A A A C A A A A
rs218858822
MGI SNP Detail
Alliance Variant		 Chr3:90423398 Rr580389 1646 bp distal
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs241119434
MGI SNP Detail
Alliance Variant		 Chr3:90423400 Rr580389 1648 bp distal
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs578840355
MGI SNP Detail
Alliance Variant		 Chr3:90423420 Rr580389 1668 bp distal
S100a13 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs266051828
MGI SNP Detail
Alliance Variant		 Chr3:90423538 Rr580389 1786 bp distal
S100a13 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225391108
MGI SNP Detail
Alliance Variant		 Chr3:90423649 Rr580389 1897 bp distal
S100a13 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs46814756
MGI SNP Detail
Alliance Variant		 Chr3:90423652 Rr580389 1900 bp distal
S100a13 Intron
 SNP A/T T T A A
rs248511015
MGI SNP Detail
Alliance Variant		 Chr3:90423725 Rr580389 1973 bp distal
S100a13 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T C T T T T T C T T T T
rs582272113
MGI SNP Detail
Alliance Variant		 Chr3:90423747 Rr580389 1995 bp distal
S100a13 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
<< first < prev1 next > last >>
Showing SNP(s) 1 - 96 of 96
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory