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Mouse SNP Summary
Symbol
Name
ID
Rr580795
regulatory region 580795
MGI:8042927

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217854155
MGI SNP Detail
Alliance Variant
Chr3:94942412 Gm65650 within coordinates of
Psmd4 Intron
Rr580795 1979 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs244674394
MGI SNP Detail
Alliance Variant
Chr3:94942430 Gm65650 within coordinates of
Psmd4 Intron
Rr580795 1961 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264002358
MGI SNP Detail
Alliance Variant
Chr3:94942446 Gm65650 within coordinates of
Psmd4 Intron
Rr580795 1945 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33096843
MGI SNP Detail
Alliance Variant
Chr3:94942482 Gm65650 within coordinates of
Psmd4 Intron
Rr580795 1909 bp proximal
SNP C/G C C C C C C C C C C C C C G C
rs244989222
MGI SNP Detail
Alliance Variant
Chr3:94942503 Gm65650 within coordinates of
Psmd4 Intron
Rr580795 1888 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs257985199
MGI SNP Detail
Alliance Variant
Chr3:94942539 Gm65650 within coordinates of
Psmd4 Intron
Rr580795 1852 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33098056
MGI SNP Detail
Alliance Variant
Chr3:94942684 Gm65650 within coordinates of
Psmd4 Intron
Rr580795 1707 bp proximal
SNP A/G G G G G G G A G G G G G G G
rs244696193
MGI SNP Detail
Alliance Variant
Chr3:94942696 Gm65650 within coordinates of
Psmd4 Intron
Rr580795 1695 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30418990
MGI SNP Detail
Alliance Variant
Chr3:94942700 Gm65650 within coordinates of
Psmd4 Intron
Rr580795 1691 bp proximal
SNP C/T C C T T T C T C C T T C T C C T C T C
rs33094067
MGI SNP Detail
Alliance Variant
Chr3:94942841 Psmd4 Intron
Rr580795 1550 bp proximal
SNP A/G A A A A A A A A A A A A A G A
rs259301517
MGI SNP Detail
Alliance Variant
Chr3:94943073 Psmd4 Intron
Rr580795 1318 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33094070
MGI SNP Detail
Alliance Variant
Chr3:94943111 Psmd4 Intron
Rr580795 1280 bp proximal
SNP C/T C C C C C C C C C C C C C T C
rs240447364
MGI SNP Detail
Alliance Variant
Chr3:94943121 Psmd4 Coding-Synonymous
Psmd4 Intron
Psmd4 mRNA-UTR
Psmd4 Splice-Site
Rr580795 1270 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253837759
MGI SNP Detail
Alliance Variant
Chr3:94943346 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1045 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs213932634
MGI SNP Detail
Alliance Variant
Chr3:94943388 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1003 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs233245198
MGI SNP Detail
Alliance Variant
Chr3:94943421 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 970 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs251764762
MGI SNP Detail
Alliance Variant
Chr3:94943426 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 965 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs585713565
MGI SNP Detail
Alliance Variant
Chr3:94943471 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 920 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219866803
MGI SNP Detail
Alliance Variant
Chr3:94943565 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 826 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241723403
MGI SNP Detail
Alliance Variant
Chr3:94943631 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 760 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs263630513
MGI SNP Detail
Alliance Variant
Chr3:94943647 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 744 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs226643206
MGI SNP Detail
Alliance Variant
Chr3:94943754 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 637 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs247788153
MGI SNP Detail
Alliance Variant
Chr3:94943776 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 615 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33094073
MGI SNP Detail
Alliance Variant
Chr3:94943806 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 585 bp proximal
SNP A/G G G G G G G G G G G A G G G G
rs258105721
MGI SNP Detail
Alliance Variant
Chr3:94943871 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 520 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33094846
MGI SNP Detail
Alliance Variant
Chr3:94944071 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 320 bp proximal
SNP A/G G G G G G G G G G G A G G A G
rs219252849
MGI SNP Detail
Alliance Variant
Chr3:94944078 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 313 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A
rs31471245
MGI SNP Detail
Alliance Variant
Chr3:94944124 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 267 bp proximal
SNP C/T C C T
rs33094848
MGI SNP Detail
Alliance Variant
Chr3:94944155 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 236 bp proximal
SNP C/T C C C C C C C C C C T C C T C
rs238303156
MGI SNP Detail
Alliance Variant
Chr3:94944191 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 200 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254049532
MGI SNP Detail
Alliance Variant
Chr3:94944194 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 197 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229464288
MGI SNP Detail
Alliance Variant
Chr3:94944327 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 64 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A A A A A A A A A A A A A A
rs253943772
MGI SNP Detail
Alliance Variant
Chr3:94944336 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 55 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs266166526
MGI SNP Detail
Alliance Variant
Chr3:94944415 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 3 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs231964132
MGI SNP Detail
Alliance Variant
Chr3:94944577 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 165 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247599174
MGI SNP Detail
Alliance Variant
Chr3:94944620 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 208 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs214020408
MGI SNP Detail
Alliance Variant
Chr3:94944641 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 229 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs233198307
MGI SNP Detail
Alliance Variant
Chr3:94944825 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 413 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs33094851
MGI SNP Detail
Alliance Variant
Chr3:94945043 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 631 bp distal
SNP A/G G G G G G G G G G G A G G G
rs211793631
MGI SNP Detail
Alliance Variant
Chr3:94945044 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 632 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs578870018
MGI SNP Detail
Alliance Variant
Chr3:94945100 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 688 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs582123567
MGI SNP Detail
Alliance Variant
Chr3:94945131 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 719 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585682016
MGI SNP Detail
Alliance Variant
Chr3:94945161 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 749 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237006446
MGI SNP Detail
Alliance Variant
Chr3:94945162 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 750 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs259905326
MGI SNP Detail
Alliance Variant
Chr3:94945170 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 758 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226750259
MGI SNP Detail
Alliance Variant
Chr3:94945247 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 835 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs232586468
MGI SNP Detail
Alliance Variant
Chr3:94945320 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 908 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C C G G G G C G G G G G G C G G G G G G G C G G G G
rs251918999
MGI SNP Detail
Alliance Variant
Chr3:94945681 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1269 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs219385866
MGI SNP Detail
Alliance Variant
Chr3:94945701 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1289 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238223170
MGI SNP Detail
Alliance Variant
Chr3:94945812 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1400 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33094853
MGI SNP Detail
Alliance Variant
Chr3:94945842 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1430 bp distal
SNP C/T C C C C C C T C C C C C C C C
rs31054854
MGI SNP Detail
Alliance Variant
Chr3:94945895 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1483 bp distal
SNP C/T T T C C C T T C C C C C C C C C C
rs33095747
MGI SNP Detail
Alliance Variant
Chr3:94946080 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1668 bp distal
SNP C/G G G G G G G C G G G G G G G G
rs264526658
MGI SNP Detail
Alliance Variant
Chr3:94946132 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1720 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33095748
MGI SNP Detail
Alliance Variant
Chr3:94946155 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1743 bp distal
SNP C/T C C C C C C C C C T C C C C
rs232194608
MGI SNP Detail
Alliance Variant
Chr3:94946197 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1785 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247353253
MGI SNP Detail
Alliance Variant
Chr3:94946232 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1820 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs257874816
MGI SNP Detail
Alliance Variant
Chr3:94946262 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1850 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs226949951
MGI SNP Detail
Alliance Variant
Chr3:94946300 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1888 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243761477
MGI SNP Detail
Alliance Variant
Chr3:94946327 Psmd4 Intron
Psmd4 Noncoding-Transcript-Variant
Rr580795 1915 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 60 of 60

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory