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Mouse SNP Summary
Symbol
Name
ID
Rr580815
regulatory region 580815
MGI:8042947

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213204234
MGI SNP Detail
Alliance Variant
Chr3:95013512 Pip5k1a Intron
Pip5k1a Noncoding-Transcript-Variant
Rr367478 within coordinates of
Rr580812 within coordinates of
Rr580815 1901 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230509963
MGI SNP Detail
Alliance Variant
Chr3:95013625 Cpgi13496 within coordinates of
Pip5k1a Intron
Pip5k1a Noncoding-Transcript-Variant
Rr367478 within coordinates of
Rr580812 within coordinates of
Rr580815 1788 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33098950
MGI SNP Detail
Alliance Variant
Chr3:95013809 Cpgi13496 within coordinates of
Pip5k1a mRNA-UTR
Pip5k1a Noncoding-Transcript-Variant
Rr367478 within coordinates of
Rr580812 within coordinates of
Rr580815 1604 bp proximal
SNP A/G G G G G G G G G G A G G G
rs252457825
MGI SNP Detail
Alliance Variant
Chr3:95014003 Cpgi13496 within coordinates of
Pip5k1a mRNA-UTR
Pip5k1a Noncoding-Transcript-Variant
Rr367478 within coordinates of
Rr580812 within coordinates of
Rr580815 1410 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226720518
MGI SNP Detail
Alliance Variant
Chr3:95014069 Cpgi13496 within coordinates of
Pip5k1a mRNA-UTR
Pip5k1a Noncoding-Transcript-Variant
Rr367478 within coordinates of
Rr580812 within coordinates of
Rr580815 1344 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs244794382
MGI SNP Detail
Alliance Variant
Chr3:95014139 Cpgi13496 within coordinates of
Pip5k1a mRNA-UTR
Pip5k1a Noncoding-Transcript-Variant
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1274 bp proximal
Tssr34417 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A
rs263321615
MGI SNP Detail
Alliance Variant
Chr3:95014150 Cpgi13496 within coordinates of
Pip5k1a mRNA-UTR
Pip5k1a Noncoding-Transcript-Variant
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1263 bp proximal
Tssr34417 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222527724
MGI SNP Detail
Alliance Variant
Chr3:95014153 Cpgi13496 within coordinates of
Pip5k1a mRNA-UTR
Pip5k1a Noncoding-Transcript-Variant
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1260 bp proximal
Tssr34417 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs239728376
MGI SNP Detail
Alliance Variant
Chr3:95014213 Cpgi13496 within coordinates of
Pip5k1a mRNA-UTR
Pip5k1a Noncoding-Transcript-Variant
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1200 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255910849
MGI SNP Detail
Alliance Variant
Chr3:95014216 Cpgi13496 within coordinates of
Pip5k1a mRNA-UTR
Pip5k1a Noncoding-Transcript-Variant
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1197 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224867195
MGI SNP Detail
Alliance Variant
Chr3:95014232 Cpgi13496 within coordinates of
Pip5k1a mRNA-UTR
Pip5k1a Noncoding-Transcript-Variant
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1181 bp proximal
Tssr34418 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242131306
MGI SNP Detail
Chr3:95014253 Cpgi13496 within coordinates of
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1160 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251568473
MGI SNP Detail
Chr3:95014264 Cpgi13496 within coordinates of
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1149 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C T T T C C C C C C C T C
rs584128216
MGI SNP Detail
Chr3:95014280 Cpgi13496 within coordinates of
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1133 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs587424215
MGI SNP Detail
Chr3:95014283 Cpgi13496 within coordinates of
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1130 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs580355962
MGI SNP Detail
Chr3:95014285 Cpgi13496 within coordinates of
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1128 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs232191558
MGI SNP Detail
Chr3:95014311 Cpgi13496 within coordinates of
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1102 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs253218142
MGI SNP Detail
Chr3:95014351 Cpgi13496 within coordinates of
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 1062 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214323820
MGI SNP Detail
Chr3:95014417 Cpgi13496 within coordinates of
Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 996 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs231252187
MGI SNP Detail
Chr3:95014624 Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 789 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242710774
MGI SNP Detail
Chr3:95014723 Rr367478 within coordinates of
Rr580813 within coordinates of
Rr580815 690 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213120185
MGI SNP Detail
Chr3:95015125 Rr367478 within coordinates of
Rr580815 288 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234653399
MGI SNP Detail
Chr3:95015222 Rr580815 191 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs246466283
MGI SNP Detail
Chr3:95015287 Rr580815 126 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs33098953
MGI SNP Detail
Chr3:95015289 Rr580815 124 bp proximal
SNP G/T G G G G G T G G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239733026
MGI SNP Detail
Chr3:95015331 Rr580815 82 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33099865
MGI SNP Detail
Chr3:95015339 Rr580815 74 bp proximal
SNP C/T T T T T T C T T T C T T C
rs221771968
MGI SNP Detail
Chr3:95015490 Rr580815 56 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30943480
MGI SNP Detail
Chr3:95015514 Rr580815 80 bp distal
SNP A/G G G A A A G A G A A G A G A G A G
rs249596414
MGI SNP Detail
Chr3:95015583 Rr580815 149 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs218720127
MGI SNP Detail
Chr3:95015704 Rr580815 270 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241904108
MGI SNP Detail
Chr3:95015714 Rr580815 280 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs266113338
MGI SNP Detail
Chr3:95015725 Rr580815 291 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C T T T C C C C C C C C C
rs33099868
MGI SNP Detail
Chr3:95015863 Rr580815 429 bp distal
SNP C/G G G G G G G G G C G G G
rs33099870
MGI SNP Detail
Chr3:95015930 Rr580815 496 bp distal
SNP C/T C C C C C T C C C C C C
rs249402861
MGI SNP Detail
Chr3:95015998 Rr580815 564 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C C A A A A A A C A A A A A A A A
rs33099872
MGI SNP Detail
Chr3:95016035 Rr580815 601 bp distal
SNP G/T G G T T G T T T G T T T T T
rs254981628
MGI SNP Detail
Chr3:95016148 Rr580815 714 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228721721
MGI SNP Detail
Chr3:95016173 Rr580815 739 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247689043
MGI SNP Detail
Chr3:95016182 Rr580815 748 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216558491
MGI SNP Detail
Chr3:95016186 Rr580815 752 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237648128
MGI SNP Detail
Chr3:95016188 Rr580815 754 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257969138
MGI SNP Detail
Chr3:95016239 Rr580815 805 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs232420539
MGI SNP Detail
Chr3:95016310 Rr580815 876 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs581076926
MGI SNP Detail
Chr3:95016368 Rr580815 934 bp distal
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs249561694
MGI SNP Detail
Chr3:95016416 Rr580815 982 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs218829149
MGI SNP Detail
Chr3:95016424 Rr580815 990 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs235545849
MGI SNP Detail
Chr3:95016435 Rr580815 1001 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G G G G G G G G C G G G G G G G G G G G G
rs260780275
MGI SNP Detail
Chr3:95016450 Rr580815 1016 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C C C C A C C C C C C C C C C C C
rs224101662
MGI SNP Detail
Chr3:95016474 Rr580815 1040 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584229920
MGI SNP Detail
Chr3:95016491 Rr580815 1057 bp distal
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs246574259
MGI SNP Detail
Chr3:95016542 Rr580815 1108 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265120279
MGI SNP Detail
Chr3:95016885 Rr580815 1451 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220060106
MGI SNP Detail
Chr3:95016918 Rr580815 1484 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs235969231
MGI SNP Detail
Chr3:95016930 Rr580815 1496 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254713768
MGI SNP Detail
Chr3:95016945 Rr580815 1511 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs586735606
MGI SNP Detail
Chr3:95016995 Rr580815 1561 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs260581565
MGI SNP Detail
Chr3:95017023 Rr580815 1589 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs263292144
MGI SNP Detail
Chr3:95017075 Rr580815 1641 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233454077
MGI SNP Detail
Chr3:95017077 Rr580815 1643 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs580587862
MGI SNP Detail
Chr3:95017094 Rr580815 1660 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs252881020
MGI SNP Detail
Chr3:95017104 Rr580815 1670 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33101164
MGI SNP Detail
Chr3:95017133 Rr580815 1699 bp distal
SNP C/T C C C C T C C T C C C
rs585397539
MGI SNP Detail
Chr3:95017189 Rr580815 1755 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs579264334
MGI SNP Detail
Chr3:95017201 Rr580815 1767 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs582732387
MGI SNP Detail
Chr3:95017213 Rr580815 1779 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs584954043
MGI SNP Detail
Chr3:95017216 Rr580815 1782 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G A G G G G G G A G G G G G G G A G G G G
rs578890011
MGI SNP Detail
Chr3:95017220 Rr580815 1786 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G A G G G G G G A G G G G G G G G G G G G
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Showing SNP(s) 1 - 68 of 68

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory