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Mouse SNP Summary
Symbol
Name
ID 		Rr582193
regulatory region 582193
MGI:8044325

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260998904
MGI SNP Detail		 Chr3:102059518 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1953 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs48989803
MGI SNP Detail		 Chr3:102059527 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1944 bp proximal
 SNP A/T T T T A
rs31314524
MGI SNP Detail		 Chr3:102059529 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1942 bp proximal
 SNP A/T A A A A A T A T A T A A A A A A A A A A
rs46571077
MGI SNP Detail		 Chr3:102059541 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1930 bp proximal
 SNP C/T T T T C
rs246563511
MGI SNP Detail		 Chr3:102059559 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1912 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G C G G G G G G C G G G G G G G G G G G C
rs265091164
MGI SNP Detail		 Chr3:102059695 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1776 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51138808
MGI SNP Detail		 Chr3:102059726 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1745 bp proximal
 SNP C/T T T T C
rs230901913
MGI SNP Detail		 Chr3:102059756 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1715 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31103084
MGI SNP Detail		 Chr3:102059783 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1688 bp proximal
 SNP C/T C T T T C C
rs31478144
MGI SNP Detail		 Chr3:102059787 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1684 bp proximal
 SNP C/T T C C C T T
rs228212207
MGI SNP Detail		 Chr3:102059804 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1667 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs30063723
MGI SNP Detail		 Chr3:102059837 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1634 bp proximal
 SNP A/G A A A A G A G G G A A G G G G G A G
rs50543280
MGI SNP Detail		 Chr3:102059875 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1596 bp proximal
 SNP G/T G G T
rs215360994
MGI SNP Detail		 Chr3:102059963 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1508 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs232798780
MGI SNP Detail		 Chr3:102059964 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1507 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs582529068
MGI SNP Detail		 Chr3:102059972 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1499 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs250420797
MGI SNP Detail		 Chr3:102059983 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1488 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs214729460
MGI SNP Detail		 Chr3:102060102 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1369 bp proximal
 SNP C/G/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C G C C C C C C C C C C C
rs38029934
MGI SNP Detail		 Chr3:102060121 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1350 bp proximal
 SNP C/T C C C C C C C C C C T C C T C
rs249966656
MGI SNP Detail		 Chr3:102060130 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1341 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs585996455
MGI SNP Detail		 Chr3:102060167 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1304 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234555975
MGI SNP Detail		 Chr3:102060185 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1286 bp proximal
 SNP A/G A G
rs235759173
MGI SNP Detail		 Chr3:102060186 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1285 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A G G G G G G G G G G G G
rs264365298
MGI SNP Detail		 Chr3:102060252 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1219 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs37979964
MGI SNP Detail		 Chr3:102060329 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1142 bp proximal
 SNP A/G A A A A A A A A A A G A A G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241290302
MGI SNP Detail		 Chr3:102060429 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 1042 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs257188502
MGI SNP Detail		 Chr3:102060528 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 943 bp proximal
 SNP A/G/T A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220062415
MGI SNP Detail		 Chr3:102060530 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 941 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235852048
MGI SNP Detail		 Chr3:102060542 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 929 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs585638140
MGI SNP Detail		 Chr3:102060592 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 879 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs582807103
MGI SNP Detail		 Chr3:102060610 Gm65665 within coordinates of
Rr582192 within coordinates of
Rr582193 861 bp proximal
 SNP C/T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C
rs586996471
MGI SNP Detail		 Chr3:102060630 Gm65665 within coordinates of
Rr582193 841 bp proximal
 SNP C/T C C C T C C C C
rs254562996
MGI SNP Detail		 Chr3:102060835 Gm65665 within coordinates of
Rr582193 636 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221881750
MGI SNP Detail		 Chr3:102060842 Gm65665 within coordinates of
Rr582193 629 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248242160
MGI SNP Detail		 Chr3:102060854 Gm65665 within coordinates of
Rr582193 617 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs265468881
MGI SNP Detail
Alliance Variant		 Chr3:102060911 Gm65665 within coordinates of
Rr582193 560 bp proximal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs580861887
MGI SNP Detail
Alliance Variant		 Chr3:102061117 Gm65665 within coordinates of
Rr582193 354 bp proximal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232195167
MGI SNP Detail
Alliance Variant		 Chr3:102061217 Gm65665 within coordinates of
Rr582193 254 bp proximal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254941701
MGI SNP Detail
Alliance Variant		 Chr3:102061237 Gm65665 within coordinates of
Rr582193 234 bp proximal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs262622085
MGI SNP Detail
Alliance Variant		 Chr3:102061244 Gm65665 within coordinates of
Rr582193 227 bp proximal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223888739
MGI SNP Detail
Alliance Variant		 Chr3:102061269 Gm65665 within coordinates of
Rr582193 202 bp proximal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs243880729
MGI SNP Detail
Alliance Variant		 Chr3:102061375 Gm65665 within coordinates of
Rr582193 96 bp proximal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs37393310
MGI SNP Detail
Alliance Variant		 Chr3:102061469 Gm65665 within coordinates of
Rr582193 2 bp proximal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A C A A C A
rs235939806
MGI SNP Detail
Alliance Variant		 Chr3:102061478 Gm65665 within coordinates of
Rr582193 within coordinates of
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs255000492
MGI SNP Detail
Alliance Variant		 Chr3:102061530 Gm65665 within coordinates of
Rr582193 within coordinates of
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216493298
MGI SNP Detail
Alliance Variant		 Chr3:102061560 Gm65665 within coordinates of
Rr582193 within coordinates of
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30937219
MGI SNP Detail
Alliance Variant		 Chr3:102061568 Gm65665 within coordinates of
Rr582193 within coordinates of
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C T T C C
rs30424305
MGI SNP Detail
Alliance Variant		 Chr3:102061629 Gm65665 within coordinates of
Rr582193 30 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP G/T G G T T G G
rs220093367
MGI SNP Detail
Alliance Variant		 Chr3:102061633 Gm65665 within coordinates of
Rr582193 34 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A
rs230018810
MGI SNP Detail
Alliance Variant		 Chr3:102061636 Gm65665 within coordinates of
Rr582193 37 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248981224
MGI SNP Detail
Alliance Variant		 Chr3:102061675 Gm65665 within coordinates of
Rr582193 76 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T
rs225001649
MGI SNP Detail
Alliance Variant		 Chr3:102061741 Gm65665 within coordinates of
Rr582193 142 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs242885458
MGI SNP Detail
Alliance Variant		 Chr3:102061745 Gm65665 within coordinates of
Rr582193 146 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258077251
MGI SNP Detail
Alliance Variant		 Chr3:102061774 Gm65665 within coordinates of
Rr582193 175 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244014027
MGI SNP Detail
Alliance Variant		 Chr3:102061913 Gm65665 within coordinates of
Rr582193 314 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260352616
MGI SNP Detail
Alliance Variant		 Chr3:102061918 Gm65665 within coordinates of
Rr582193 319 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228882440
MGI SNP Detail
Alliance Variant		 Chr3:102061933 Gm65665 within coordinates of
Rr582193 334 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/C/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs260524054
MGI SNP Detail
Alliance Variant		 Chr3:102062027 Gm65665 within coordinates of
Rr582193 428 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs585240543
MGI SNP Detail
Alliance Variant		 Chr3:102062032 Gm65665 within coordinates of
Rr582193 433 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A A A A A A A A A T A A A A
rs586964022
MGI SNP Detail
Alliance Variant		 Chr3:102062036 Gm65665 within coordinates of
Rr582193 437 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs216077991
MGI SNP Detail
Alliance Variant		 Chr3:102062065 Gm65665 within coordinates of
Rr582193 466 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241369992
MGI SNP Detail
Alliance Variant		 Chr3:102062071 Gm65665 within coordinates of
Rr582193 472 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs250885484
MGI SNP Detail
Alliance Variant		 Chr3:102062074 Gm65665 within coordinates of
Rr582193 475 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs214612891
MGI SNP Detail
Alliance Variant		 Chr3:102062076 Gm65665 within coordinates of
Rr582193 477 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs230148610
MGI SNP Detail
Alliance Variant		 Chr3:102062083 Gm65665 within coordinates of
Rr582193 484 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249008324
MGI SNP Detail
Alliance Variant		 Chr3:102062099 Gm65665 within coordinates of
Rr582193 500 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216725951
MGI SNP Detail
Alliance Variant		 Chr3:102062153 Gm65665 within coordinates of
Rr582193 554 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240305278
MGI SNP Detail
Alliance Variant		 Chr3:102062179 Gm65665 within coordinates of
Rr582193 580 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs262873098
MGI SNP Detail
Alliance Variant		 Chr3:102062191 Gm65665 within coordinates of
Rr582193 592 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs224858269
MGI SNP Detail
Alliance Variant		 Chr3:102062194 Gm65665 within coordinates of
Rr582193 595 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs245769649
MGI SNP Detail
Alliance Variant		 Chr3:102062196 Gm65665 within coordinates of
Rr582193 597 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs251911167
MGI SNP Detail
Alliance Variant		 Chr3:102062277 Gm65665 within coordinates of
Rr582193 678 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217975777
MGI SNP Detail
Alliance Variant		 Chr3:102062295 Gm65665 within coordinates of
Rr582193 696 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/C/G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G C G
rs237822315
MGI SNP Detail
Alliance Variant		 Chr3:102062308 Gm65665 within coordinates of
Rr582193 709 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs580745985
MGI SNP Detail
Alliance Variant		 Chr3:102062312 Gm65665 within coordinates of
Rr582193 713 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583939392
MGI SNP Detail
Alliance Variant		 Chr3:102062324 Gm65665 within coordinates of
Rr582193 725 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs578772127
MGI SNP Detail
Alliance Variant		 Chr3:102062366 Gm65665 within coordinates of
Rr582193 767 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs582216507
MGI SNP Detail
Alliance Variant		 Chr3:102062380 Gm65665 within coordinates of
Rr582193 781 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs585014654
MGI SNP Detail
Alliance Variant		 Chr3:102062396 Gm65665 within coordinates of
Rr582193 797 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs578970430
MGI SNP Detail
Alliance Variant		 Chr3:102062409 Gm65665 within coordinates of
Rr582193 810 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs582439126
MGI SNP Detail
Alliance Variant		 Chr3:102062421 Gm65665 within coordinates of
Rr582193 822 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G C G G G G
rs586368274
MGI SNP Detail
Alliance Variant		 Chr3:102062428 Gm65665 within coordinates of
Rr582193 829 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30313853
MGI SNP Detail
Alliance Variant		 Chr3:102062453 Gm65665 within coordinates of
Rr582193 854 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G A G A G A G G G G G G A G G
rs234558035
MGI SNP Detail
Alliance Variant		 Chr3:102062464 Gm65665 within coordinates of
Rr582193 865 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs37298425
MGI SNP Detail
Alliance Variant		 Chr3:102062512 Gm65665 within coordinates of
Rr582193 913 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A T A
rs232711821
MGI SNP Detail
Alliance Variant		 Chr3:102062663 Gm65665 within coordinates of
Rr582193 1064 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T
rs36801100
MGI SNP Detail
Alliance Variant		 Chr3:102062781 Rr582193 1182 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/C A A A A A A C A A A A A A A C
rs223668315
MGI SNP Detail
Alliance Variant		 Chr3:102062803 Rr582193 1204 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243204383
MGI SNP Detail
Alliance Variant		 Chr3:102062860 Rr582193 1261 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216759229
MGI SNP Detail
Alliance Variant		 Chr3:102062872 Rr582193 1273 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs243089028
MGI SNP Detail
Alliance Variant		 Chr3:102062879 Rr582193 1280 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
rs258629896
MGI SNP Detail
Alliance Variant		 Chr3:102062906 Rr582193 1307 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs37457695
MGI SNP Detail
Alliance Variant		 Chr3:102062956 Rr582193 1357 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A C A A C A
rs36723842
MGI SNP Detail
Alliance Variant		 Chr3:102063061 Rr582193 1462 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T C T T T T
rs218008933
MGI SNP Detail
Alliance Variant		 Chr3:102063086 Rr582193 1487 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A
rs237860695
MGI SNP Detail
Alliance Variant		 Chr3:102063124 Rr582193 1525 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254093076
MGI SNP Detail
Alliance Variant		 Chr3:102063130 Rr582193 1531 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs226307952
MGI SNP Detail
Alliance Variant		 Chr3:102063186 Rr582193 1587 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247452610
MGI SNP Detail
Alliance Variant		 Chr3:102063216 Rr582193 1617 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263404067
MGI SNP Detail
Alliance Variant		 Chr3:102063217 Rr582193 1618 bp distal
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
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Showing SNP(s) 1 - 100 of 108
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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