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Mouse SNP Summary
Symbol
Name
ID 		Rr582209
regulatory region 582209
MGI:8044341

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252854469
MGI SNP Detail
Alliance Variant		 Chr3:102109384 Gm16160 within coordinates of
Rr582209 1988 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs221762614
MGI SNP Detail
Alliance Variant		 Chr3:102109433 Gm16160 within coordinates of
Rr582209 1939 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs227247983
MGI SNP Detail
Alliance Variant		 Chr3:102109496 Gm16160 within coordinates of
Rr582209 1876 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T C
rs262703387
MGI SNP Detail
Alliance Variant		 Chr3:102109499 Gm16160 within coordinates of
Rr582209 1873 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs48602766
MGI SNP Detail
Alliance Variant		 Chr3:102109548 Gm16160 within coordinates of
Rr582209 1824 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T C
rs218799789
MGI SNP Detail
Alliance Variant		 Chr3:102109647 Gm16160 within coordinates of
Rr582209 1725 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C T
rs258691923
MGI SNP Detail
Alliance Variant		 Chr3:102109668 Gm16160 within coordinates of
Rr582209 1704 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs46242272
MGI SNP Detail
Alliance Variant		 Chr3:102109714 Gm16160 within coordinates of
Rr582209 1658 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/C C A A C
rs261718417
MGI SNP Detail
Alliance Variant		 Chr3:102109743 Gm16160 within coordinates of
Rr582209 1629 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP G/T G T
rs257655183
MGI SNP Detail
Alliance Variant		 Chr3:102109824 Gm16160 within coordinates of
Rr582209 1548 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232682487
MGI SNP Detail
Alliance Variant		 Chr3:102109894 Gm16160 within coordinates of
Rr582209 1478 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs583770251
MGI SNP Detail
Alliance Variant		 Chr3:102109959 Gm16160 within coordinates of
Rr582209 1413 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs255634852
MGI SNP Detail
Alliance Variant		 Chr3:102109984 Gm16160 within coordinates of
Rr582209 1388 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212304654
MGI SNP Detail
Alliance Variant		 Chr3:102110005 Gm16160 within coordinates of
Rr582209 1367 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/T A T
rs244493444
MGI SNP Detail
Alliance Variant		 Chr3:102110095 Gm16160 within coordinates of
Rr582209 1277 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47015370
MGI SNP Detail
Alliance Variant		 Chr3:102110141 Gm16160 within coordinates of
Rr582209 1231 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G A A G
rs236472597
MGI SNP Detail
Alliance Variant		 Chr3:102110144 Gm16160 within coordinates of
Rr582209 1228 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs50909309
MGI SNP Detail
Alliance Variant		 Chr3:102110161 Gm16160 within coordinates of
Rr582209 1211 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C T C C
rs51283434
MGI SNP Detail
Alliance Variant		 Chr3:102110178 Gm16160 within coordinates of
Rr582209 1194 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/G A G G A
rs46891391
MGI SNP Detail
Alliance Variant		 Chr3:102110224 Gm16160 within coordinates of
Rr582209 1148 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/T T A A T
rs262428477
MGI SNP Detail
Alliance Variant		 Chr3:102110315 Gm16160 within coordinates of
Rr582209 1057 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220256975
MGI SNP Detail
Alliance Variant		 Chr3:102110468 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 904 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs261057962
MGI SNP Detail
Alliance Variant		 Chr3:102110485 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 887 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A A A
rs226398649
MGI SNP Detail
Alliance Variant		 Chr3:102110488 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 884 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/G A G
rs31197331
MGI SNP Detail
Alliance Variant		 Chr3:102110587 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 785 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T C C T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs49338255
MGI SNP Detail
Alliance Variant		 Chr3:102110663 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 709 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/G C G G C
rs46197423
MGI SNP Detail
Alliance Variant		 Chr3:102110664 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 708 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/C A C A
rs229784307
MGI SNP Detail
Alliance Variant		 Chr3:102110679 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 693 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243651510
MGI SNP Detail
Alliance Variant		 Chr3:102110680 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 692 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs31649764
MGI SNP Detail
Alliance Variant		 Chr3:102110681 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 691 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G A A G G
rs228055563
MGI SNP Detail
Alliance Variant		 Chr3:102110732 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 640 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244506178
MGI SNP Detail
Alliance Variant		 Chr3:102110811 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 561 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs47854257
MGI SNP Detail
Alliance Variant		 Chr3:102110856 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 516 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP G/T T G G T
rs229361498
MGI SNP Detail
Alliance Variant		 Chr3:102110866 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 506 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31046342
MGI SNP Detail
Alliance Variant		 Chr3:102110908 Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 464 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T C C C T
rs216826077
MGI SNP Detail
Alliance Variant		 Chr3:102111052 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 320 bp proximal
Vangl1 Intron
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/C A A A A A C A A C A A A C C C C A A A C A A C C C A A C A A C A C C C A C C C C C C C A C A A A A C A C A
rs45698800
MGI SNP Detail
Alliance Variant		 Chr3:102111104 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 268 bp proximal
Vangl1 Intron
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T C C T
rs50232915
MGI SNP Detail
Alliance Variant		 Chr3:102111157 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 215 bp proximal
Vangl1 Intron
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T C
rs252499046
MGI SNP Detail
Alliance Variant		 Chr3:102111260 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582207 within coordinates of
Rr582209 112 bp proximal
Vangl1 Intron
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs52041434
MGI SNP Detail
Alliance Variant		 Chr3:102111338 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582208 within coordinates of
Rr582209 34 bp proximal
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP G/T G T T G
rs239035508
MGI SNP Detail
Alliance Variant		 Chr3:102111426 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 within coordinates of
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251735350
MGI SNP Detail
Alliance Variant		 Chr3:102111454 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 within coordinates of
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs222297575
MGI SNP Detail
Alliance Variant		 Chr3:102111564 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 within coordinates of
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T C T C C C C T C C C C C C T T T C C C C C C T T C T C C T C C C C C C C C C C C T C C T C C C T C C
rs246493658
MGI SNP Detail
Alliance Variant		 Chr3:102111612 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 within coordinates of
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262968116
MGI SNP Detail
Alliance Variant		 Chr3:102111647 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 within coordinates of
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228686719
MGI SNP Detail
Alliance Variant		 Chr3:102111671 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 within coordinates of
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238369011
MGI SNP Detail
Alliance Variant		 Chr3:102111738 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 within coordinates of
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260830021
MGI SNP Detail
Alliance Variant		 Chr3:102111776 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 within coordinates of
Vangl1 Intron
Vangl1 Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G C G G G G C G G G G G G G G G C G G G G G G G G G G G G
rs229457688
MGI SNP Detail
Alliance Variant		 Chr3:102111843 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 within coordinates of
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246700491
MGI SNP Detail
Alliance Variant		 Chr3:102111935 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 within coordinates of
Tssr34830 within coordinates of
Vangl1 mRNA-UTR
Vangl1 Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217374746
MGI SNP Detail		 Chr3:102112023 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 25 bp distal
Rr582210 within coordinates of
 SNP A/T A A A A T A A T A A T T T T A A T A A T T A A T A T A T T T A T T T T T T T A T A A A T T A T
rs581805067
MGI SNP Detail		 Chr3:102112083 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 85 bp distal
Rr582210 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs230110851
MGI SNP Detail		 Chr3:102112146 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 148 bp distal
Rr582210 within coordinates of
 SNP C/T T T T C C T C C C C T T C C C C T T C C T C C C T C C C C C C C T C T T T C C C
rs585268203
MGI SNP Detail		 Chr3:102112164 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 166 bp distal
Rr582210 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C T C T C C T T T C T C T C C C C T C C
rs256318013
MGI SNP Detail		 Chr3:102112265 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 267 bp distal
Rr582210 within coordinates of
 SNP C/T T T T T C T C T T C C C C T T T C T T C C C T T C T C C C C T C C C C C C C T C T T T C C T C
rs108279782
MGI SNP Detail		 Chr3:102112321 Cpgi13625 within coordinates of
Gm16160 within coordinates of
Rr582209 323 bp distal
Rr582210 within coordinates of
 SNP C/T C T C
rs230668232
MGI SNP Detail		 Chr3:102112344 Gm16160 within coordinates of
Rr582209 346 bp distal
Rr582210 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs108591153
MGI SNP Detail		 Chr3:102112405 Gm16160 within coordinates of
Rr582209 407 bp distal
Rr582210 within coordinates of
 SNP G G
rs252556725
MGI SNP Detail		 Chr3:102112409 Gm16160 within coordinates of
Rr582209 411 bp distal
Rr582210 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G A G G G G A A G G G G A G G G G G G A G G G G G G G A G G G
rs217255206
MGI SNP Detail		 Chr3:102112583 Gm16160 within coordinates of
Rr582209 585 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30870137
MGI SNP Detail		 Chr3:102112593 Gm16160 within coordinates of
Rr582209 595 bp distal
 SNP A/C A C A A
rs30977585
MGI SNP Detail		 Chr3:102112618 Gm16160 within coordinates of
Rr582209 620 bp distal
 SNP A/G G A A G
rs30958418
MGI SNP Detail		 Chr3:102112637 Gm16160 within coordinates of
Rr582209 639 bp distal
 SNP C/T T C C T
rs243739538
MGI SNP Detail		 Chr3:102112682 Gm16160 within coordinates of
Rr582209 684 bp distal
 SNP C/G C C C G C G G G G C G G G G G G C C C G G G G G G C C G C G G C G G G G G G G G G G G C G G C G G G C G
rs260603169
MGI SNP Detail		 Chr3:102112686 Gm16160 within coordinates of
Rr582209 688 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30903386
MGI SNP Detail		 Chr3:102112743 Gm16160 within coordinates of
Rr582209 745 bp distal
 SNP A/G A G G G A
rs238481106
MGI SNP Detail		 Chr3:102112753 Gm16160 within coordinates of
Rr582209 755 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs260915373
MGI SNP Detail		 Chr3:102112808 Gm16160 within coordinates of
Rr582209 810 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs223744487
MGI SNP Detail		 Chr3:102112865 Gm16160 within coordinates of
Rr582209 867 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs240777571
MGI SNP Detail		 Chr3:102112867 Gm16160 within coordinates of
Rr582209 869 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263721439
MGI SNP Detail		 Chr3:102112885 Gm16160 within coordinates of
Rr582209 887 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30620943
MGI SNP Detail		 Chr3:102112887 Gm16160 within coordinates of
Rr582209 889 bp distal
 SNP A/G G G A A A G
rs30781789
MGI SNP Detail		 Chr3:102112913 Gm16160 within coordinates of
Rr582209 915 bp distal
 SNP A/G A A G G G A
rs264662158
MGI SNP Detail		 Chr3:102112927 Gm16160 within coordinates of
Rr582209 929 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264265693
MGI SNP Detail		 Chr3:102112959 Gm16160 within coordinates of
Rr582209 961 bp distal
 SNP A/G A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246720975
MGI SNP Detail		 Chr3:102113065 Gm16160 within coordinates of
Rr582209 1067 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217295770
MGI SNP Detail		 Chr3:102113073 Gm16160 within coordinates of
Rr582209 1075 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs232752640
MGI SNP Detail		 Chr3:102113117 Gm16160 within coordinates of
Rr582209 1119 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258030301
MGI SNP Detail		 Chr3:102113164 Gm16160 within coordinates of
Rr582209 1166 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213513410
MGI SNP Detail		 Chr3:102113241 Gm16160 within coordinates of
Rr582209 1243 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238777035
MGI SNP Detail		 Chr3:102113247 Gm16160 within coordinates of
Rr582209 1249 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs255270073
MGI SNP Detail		 Chr3:102113300 Gm16160 within coordinates of
Rr582209 1302 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218596309
MGI SNP Detail		 Chr3:102113310 Gm16160 within coordinates of
Rr582209 1312 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235258380
MGI SNP Detail		 Chr3:102113326 Gm16160 within coordinates of
Rr582209 1328 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs254864467
MGI SNP Detail		 Chr3:102113344 Gm16160 within coordinates of
Rr582209 1346 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223755771
MGI SNP Detail		 Chr3:102113351 Gm16160 within coordinates of
Rr582209 1353 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240791840
MGI SNP Detail		 Chr3:102113381 Gm16160 within coordinates of
Rr582209 1383 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C A C C C A
rs265778502
MGI SNP Detail		 Chr3:102113413 Gm16160 within coordinates of
Rr582209 1415 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222756208
MGI SNP Detail		 Chr3:102113473 Gm16160 within coordinates of
Rr582209 1475 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs247114858
MGI SNP Detail		 Chr3:102113530 Gm16160 within coordinates of
Rr582209 1532 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580770363
MGI SNP Detail		 Chr3:102113544 Gm16160 within coordinates of
Rr582209 1546 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261624534
MGI SNP Detail		 Chr3:102113569 Gm16160 within coordinates of
Rr582209 1571 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30829362
MGI SNP Detail		 Chr3:102113577 Gm16160 within coordinates of
Rr582209 1579 bp distal
 SNP A/G A G G G A
rs30813240
MGI SNP Detail		 Chr3:102113587 Gm16160 within coordinates of
Rr582209 1589 bp distal
 SNP C/T C T T C C
rs259846248
MGI SNP Detail		 Chr3:102113674 Gm16160 within coordinates of
Rr582209 1676 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs226800273
MGI SNP Detail		 Chr3:102113681 Gm16160 within coordinates of
Rr582209 1683 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253059011
MGI SNP Detail		 Chr3:102113685 Gm16160 within coordinates of
Rr582209 1687 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214090697
MGI SNP Detail		 Chr3:102113744 Gm16160 within coordinates of
Rr582209 1746 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236850927
MGI SNP Detail		 Chr3:102113766 Gm16160 within coordinates of
Rr582209 1768 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs252273930
MGI SNP Detail		 Chr3:102113769 Gm16160 within coordinates of
Rr582209 1771 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 100 of 107
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory