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Mouse SNP Summary
Symbol
Name
ID
Rr584236
regulatory region 584236
MGI:8046368

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253373210
MGI SNP Detail
Alliance Variant
Chr3:121911636 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1927 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs222077086
MGI SNP Detail
Alliance Variant
Chr3:121911701 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1862 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs36957589
MGI SNP Detail
Alliance Variant
Chr3:121911705 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1858 bp proximal
SNP C/G G G G G C G C C G G G C G G C C G
rs51709578
MGI SNP Detail
Alliance Variant
Chr3:121911797 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1766 bp proximal
SNP A/G A G A G
rs232107845
MGI SNP Detail
Alliance Variant
Chr3:121911814 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1749 bp proximal
SNP G/T G G G G T G G G G T G G G G G G T T T G G T T G G T T G T T G G G T T T T T T G T T T T T T G T T T T
rs244036379
MGI SNP Detail
Alliance Variant
Chr3:121911832 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1731 bp proximal
SNP G/T G G G T G G G G T G G G G G G T T T G G T T G G T T G T G G G T T T T T T G T T T T T T G T T T T
rs264991331
MGI SNP Detail
Alliance Variant
Chr3:121911833 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1730 bp proximal
SNP A/G G G G A G G G G A G G G G G G A A A G G A A G G A A G A G G G A A A A A A G A A A A A A G A A A A
rs50871038
MGI SNP Detail
Alliance Variant
Chr3:121911843 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1720 bp proximal
SNP A/G A A G
rs243195621
MGI SNP Detail
Alliance Variant
Chr3:121911854 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1709 bp proximal
SNP A/G G G G A G G G G A G G G G G A A A G G A A G G A A G A G G G A A A A A A G A A A A A A A A A A
rs217232822
MGI SNP Detail
Alliance Variant
Chr3:121911856 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1707 bp proximal
SNP G/T T T T T T T T G T T T T T T T T T T T T T T G T T T T T T T G T T T T T T T T T T T T T T T T T
rs48490408
MGI SNP Detail
Alliance Variant
Chr3:121911868 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1695 bp proximal
SNP C/T C C T
rs258660004
MGI SNP Detail
Alliance Variant
Chr3:121911912 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1651 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs37631610
MGI SNP Detail
Alliance Variant
Chr3:121911945 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1618 bp proximal
SNP A/G G G G G G G G G A G A G G A
rs50746423
MGI SNP Detail
Alliance Variant
Chr3:121911980 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1583 bp proximal
SNP C/T C T T T
rs49944680
MGI SNP Detail
Alliance Variant
Chr3:121911995 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1568 bp proximal
SNP A A A A
rs213240277
MGI SNP Detail
Alliance Variant
Chr3:121912021 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1542 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs581750177
MGI SNP Detail
Alliance Variant
Chr3:121912095 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1468 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs36917245
MGI SNP Detail
Alliance Variant
Chr3:121912175 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1388 bp proximal
SNP A/G A A A A A A G A G A G G A G
rs253249437
MGI SNP Detail
Alliance Variant
Chr3:121912178 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1385 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs38147266
MGI SNP Detail
Alliance Variant
Chr3:121912213 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1350 bp proximal
SNP C/T C C C C C C C T C T T T T T
rs224016074
MGI SNP Detail
Alliance Variant
Chr3:121912225 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1338 bp proximal
SNP A/C A C
rs263276453
MGI SNP Detail
Alliance Variant
Chr3:121912228 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1335 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs48452610
MGI SNP Detail
Alliance Variant
Chr3:121912256 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1307 bp proximal
SNP C/T C T T T
rs246861393
MGI SNP Detail
Alliance Variant
Chr3:121912354 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 1209 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs262373383
MGI SNP Detail
Alliance Variant
Chr3:121912418 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 1145 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224934752
MGI SNP Detail
Alliance Variant
Chr3:121912448 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 1115 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236916793
MGI SNP Detail
Alliance Variant
Chr3:121912545 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 1018 bp proximal
SNP A/G/T T T T T T T T T T T T T T T T T T T T A T T A T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs261008967
MGI SNP Detail
Alliance Variant
Chr3:121912585 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 978 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228426761
MGI SNP Detail
Alliance Variant
Chr3:121912593 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 970 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252866774
MGI SNP Detail
Alliance Variant
Chr3:121912606 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 957 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs216529415
MGI SNP Detail
Alliance Variant
Chr3:121912607 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 956 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214702496
MGI SNP Detail
Alliance Variant
Chr3:121912621 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 942 bp proximal
SNP A/G A G
rs238057626
MGI SNP Detail
Alliance Variant
Chr3:121912627 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 936 bp proximal
SNP A/T T A
rs30761476
MGI SNP Detail
Alliance Variant
Chr3:121912635 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 928 bp proximal
SNP C/G C G C G
rs230329575
MGI SNP Detail
Alliance Variant
Chr3:121912705 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 858 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs247524574
MGI SNP Detail
Alliance Variant
Chr3:121912726 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 837 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216696237
MGI SNP Detail
Alliance Variant
Chr3:121912742 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 821 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241335228
MGI SNP Detail
Alliance Variant
Chr3:121912756 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 807 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215063182
MGI SNP Detail
Alliance Variant
Chr3:121912801 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584235 within coordinates of
Rr584236 762 bp proximal
SNP A/G A G
rs258783218
MGI SNP Detail
Alliance Variant
Chr3:121912843 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 720 bp proximal
SNP G/T T T T T G T T T G G T T T T T G G G T G G G T T T G G G G G G G G G
rs223334117
MGI SNP Detail
Alliance Variant
Chr3:121912855 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 708 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236902053
MGI SNP Detail
Alliance Variant
Chr3:121912869 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 694 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251108138
MGI SNP Detail
Alliance Variant
Chr3:121912879 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 684 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218880686
MGI SNP Detail
Alliance Variant
Chr3:121913001 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 562 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237133070
MGI SNP Detail
Alliance Variant
Chr3:121913010 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 553 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261018983
MGI SNP Detail
Alliance Variant
Chr3:121913014 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 549 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs222294541
MGI SNP Detail
Alliance Variant
Chr3:121913069 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 494 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs248498618
MGI SNP Detail
Alliance Variant
Chr3:121913131 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 432 bp proximal
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs263078665
MGI SNP Detail
Alliance Variant
Chr3:121913153 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 410 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs234145882
MGI SNP Detail
Alliance Variant
Chr3:121913154 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 409 bp proximal
SNP A/G A G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255464303
MGI SNP Detail
Alliance Variant
Chr3:121913172 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 391 bp proximal
SNP G G G
rs222729968
MGI SNP Detail
Alliance Variant
Chr3:121913195 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 368 bp proximal
SNP A/T A T
rs235489419
MGI SNP Detail
Alliance Variant
Chr3:121913199 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 364 bp proximal
SNP C/T T C
rs260967184
MGI SNP Detail
Alliance Variant
Chr3:121913203 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 360 bp proximal
SNP C/T C T
rs223796993
MGI SNP Detail
Alliance Variant
Chr3:121913211 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 352 bp proximal
SNP A/G G A
rs238782878
MGI SNP Detail
Alliance Variant
Chr3:121913223 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 340 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246396832
MGI SNP Detail
Alliance Variant
Chr3:121913274 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 289 bp proximal
SNP C/T C T
rs38705119
MGI SNP Detail
Alliance Variant
Chr3:121913309 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 254 bp proximal
SNP A/C C C C C C A A C A C A A C A
rs38273197
MGI SNP Detail
Alliance Variant
Chr3:121913310 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 253 bp proximal
SNP A/C A A A A C A C A A C A C C A
rs251120656
MGI SNP Detail
Alliance Variant
Chr3:121913334 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 229 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218710355
MGI SNP Detail
Alliance Variant
Chr3:121913335 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 228 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229885349
MGI SNP Detail
Alliance Variant
Chr3:121913394 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 169 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs255277029
MGI SNP Detail
Alliance Variant
Chr3:121913409 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 154 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226137967
MGI SNP Detail
Alliance Variant
Chr3:121913410 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 153 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs246017780
MGI SNP Detail
Alliance Variant
Chr3:121913413 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 150 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265414194
MGI SNP Detail
Alliance Variant
Chr3:121913475 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 88 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223135449
MGI SNP Detail
Alliance Variant
Chr3:121913494 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 69 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs237236023
MGI SNP Detail
Alliance Variant
Chr3:121913501 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 62 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241332620
MGI SNP Detail
Alliance Variant
Chr3:121913571 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 within coordinates of
SNP C C C
rs258756822
MGI SNP Detail
Alliance Variant
Chr3:121913572 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 within coordinates of
SNP A/G G A
rs247695039
MGI SNP Detail
Alliance Variant
Chr3:121913575 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259459372
MGI SNP Detail
Alliance Variant
Chr3:121913617 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 33 bp distal
SNP A/T A A A A T A A A A T A A A A A A T T T T A T T A A T T A T T A A A T T T T T T A T T T T T T A T T T T T
rs107769595
MGI SNP Detail
Alliance Variant
Chr3:121913627 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 43 bp distal
SNP C/T C C T C T
rs252383846
MGI SNP Detail
Alliance Variant
Chr3:121913653 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 69 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31545952
MGI SNP Detail
Alliance Variant
Chr3:121913814 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 230 bp distal
SNP C/T C C T C T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230203789
MGI SNP Detail
Alliance Variant
Chr3:121913815 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 231 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31152042
MGI SNP Detail
Alliance Variant
Chr3:121913892 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 308 bp distal
SNP C/T T T T T C T T C C C T C C C C C C C
rs36730600
MGI SNP Detail
Alliance Variant
Chr3:121913913 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 329 bp distal
SNP C/G C C C C C G C G C G C G G C C G
rs38838052
MGI SNP Detail
Alliance Variant
Chr3:121913942 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 358 bp distal
SNP A/T T T T T T T A T A T A T A A T T A
rs255139078
MGI SNP Detail
Alliance Variant
Chr3:121914026 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 442 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs218036639
MGI SNP Detail
Alliance Variant
Chr3:121914107 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 523 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240945911
MGI SNP Detail
Alliance Variant
Chr3:121914254 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 670 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs258328675
MGI SNP Detail
Alliance Variant
Chr3:121914280 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 696 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs31241509
MGI SNP Detail
Alliance Variant
Chr3:121914314 Abca4 Intron
Abca4 mRNA-UTR
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 730 bp distal
SNP C/T C C C C C T C C T C C C T C C T C
rs237298861
MGI SNP Detail
Alliance Variant
Chr3:121914337 Abca4 Intron
Abca4 mRNA-UTR
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 753 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T G T T T T T T T G T T T T
rs248727074
MGI SNP Detail
Alliance Variant
Chr3:121914364 Abca4 Intron
Abca4 mRNA-UTR
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 780 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217749884
MGI SNP Detail
Alliance Variant
Chr3:121914407 Abca4 Intron
Abca4 mRNA-UTR
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 823 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs37546644
MGI SNP Detail
Alliance Variant
Chr3:121914413 Abca4 Intron
Abca4 mRNA-UTR
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 829 bp distal
SNP C/G C C C C G C G C G G
rs241859117
MGI SNP Detail
Alliance Variant
Chr3:121914415 Abca4 Intron
Abca4 mRNA-UTR
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 831 bp distal
SNP A/G A A A A A A A A G A A A A A A A A A A A A A G G G A A A A A A A G A A A A A A G A A A A A A G G A A A A
rs265995395
MGI SNP Detail
Alliance Variant
Chr3:121914419 Abca4 Intron
Abca4 mRNA-UTR
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 835 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs232733167
MGI SNP Detail
Alliance Variant
Chr3:121914530 Abca4 Intron
Abca4 mRNA-UTR
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 946 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs37857437
MGI SNP Detail
Alliance Variant
Chr3:121914560 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 976 bp distal
SNP G/T T T T T T T T T T T T T T G T
rs262825766
MGI SNP Detail
Alliance Variant
Chr3:121914638 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1054 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs225811222
MGI SNP Detail
Alliance Variant
Chr3:121914640 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1056 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs244328202
MGI SNP Detail
Alliance Variant
Chr3:121914660 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1076 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs212286767
MGI SNP Detail
Alliance Variant
Chr3:121914679 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1095 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229143902
MGI SNP Detail
Alliance Variant
Chr3:121914690 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1106 bp distal
SNP T T T
rs583549554
MGI SNP Detail
Alliance Variant
Chr3:121914702 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1118 bp distal
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs587368007
MGI SNP Detail
Alliance Variant
Chr3:121914703 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1119 bp distal
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs248684551
MGI SNP Detail
Alliance Variant
Chr3:121914841 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm40138 within coordinates of
Rr584236 1257 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
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Showing SNP(s) 1 - 100 of 118

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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