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Mouse SNP Summary
Symbol
Name
ID 		Rr584244
regulatory region 584244
MGI:8046376

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227818345
MGI SNP Detail
Alliance Variant		 Chr3:121932675 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1993 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243431590
MGI SNP Detail
Alliance Variant		 Chr3:121932680 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1988 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs228884156
MGI SNP Detail
Alliance Variant		 Chr3:121932682 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1986 bp proximal
 SNP T T T
rs235412899
MGI SNP Detail
Alliance Variant		 Chr3:121932689 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1979 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247251733
MGI SNP Detail
Alliance Variant		 Chr3:121932719 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1949 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A T A A T A A T T
rs215688260
MGI SNP Detail
Alliance Variant		 Chr3:121932772 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1896 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T G T T T T T G G
rs36405415
MGI SNP Detail
Alliance Variant		 Chr3:121932787 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1881 bp proximal
 SNP C/T C C C C C C T C C C C C T C
rs256716233
MGI SNP Detail
Alliance Variant		 Chr3:121932808 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1860 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs36789747
MGI SNP Detail
Alliance Variant		 Chr3:121932842 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1826 bp proximal
 SNP G/T G G G G G G G T G T G T T G G G
rs30904418
MGI SNP Detail
Alliance Variant		 Chr3:121932993 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1675 bp proximal
 SNP C/T C C C C C C C T C C C T C C C T C
rs253452905
MGI SNP Detail
Alliance Variant		 Chr3:121933048 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1620 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs37139075
MGI SNP Detail
Alliance Variant		 Chr3:121933056 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1612 bp proximal
 SNP A/G A A A A A G G A G G G G G A
rs36816766
MGI SNP Detail
Alliance Variant		 Chr3:121933060 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1608 bp proximal
 SNP A/T T T A T T A A T A A A T
rs265615693
MGI SNP Detail
Alliance Variant		 Chr3:121933094 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1574 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223791751
MGI SNP Detail
Alliance Variant		 Chr3:121933110 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1558 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs38539721
MGI SNP Detail
Alliance Variant		 Chr3:121933122 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1546 bp proximal
 SNP C/T C C C C T C C T C C C T C C T T C
rs261967337
MGI SNP Detail
Alliance Variant		 Chr3:121933129 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1539 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs38367420
MGI SNP Detail
Alliance Variant		 Chr3:121933153 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1515 bp proximal
 SNP A/G A A G A A G A G G G G G A
rs260405626
MGI SNP Detail
Alliance Variant		 Chr3:121933171 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1497 bp proximal
 SNP A/C C A
rs36677805
MGI SNP Detail
Alliance Variant		 Chr3:121933193 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1475 bp proximal
 SNP C/T T T T T T T T C T C C T T T
rs228498357
MGI SNP Detail
Alliance Variant		 Chr3:121933225 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1443 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs36612318
MGI SNP Detail
Alliance Variant		 Chr3:121933277 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1391 bp proximal
 SNP A/G G G A G G G G A G A G A A G G G
rs30506364
MGI SNP Detail
Alliance Variant		 Chr3:121933289 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1379 bp proximal
 SNP C/G G G G G G G G G C G G G C G G C C
rs230836327
MGI SNP Detail
Alliance Variant		 Chr3:121933305 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1363 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs38321551
MGI SNP Detail
Alliance Variant		 Chr3:121933326 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1342 bp proximal
 SNP A/T A A A A A A A A A A A A T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30857948
MGI SNP Detail
Alliance Variant		 Chr3:121933404 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1264 bp proximal
 SNP A/T T T T A A A
rs31555872
MGI SNP Detail
Alliance Variant		 Chr3:121933423 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1245 bp proximal
 SNP C/T C C C C T C C T C C T T T T
rs584215530
MGI SNP Detail
Alliance Variant		 Chr3:121933439 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1229 bp proximal
 SNP A/G A A A A G A A A A G A A A A A A G G G A A G A A A G G A G G A A A G G G G G G A G G A G A G A A G G A A
rs30068462
MGI SNP Detail
Alliance Variant		 Chr3:121933519 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1149 bp proximal
 SNP A/G G G G G A A A
rs216462627
MGI SNP Detail
Alliance Variant		 Chr3:121933595 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1073 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31084284
MGI SNP Detail
Alliance Variant		 Chr3:121933658 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 1010 bp proximal
 SNP C/T C C C C T C T
rs258874084
MGI SNP Detail
Alliance Variant		 Chr3:121933671 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 997 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30357885
MGI SNP Detail
Alliance Variant		 Chr3:121933701 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 967 bp proximal
 SNP G/T G G G G G G G T G G G T G G G T T
rs36345417
MGI SNP Detail
Alliance Variant		 Chr3:121933736 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 932 bp proximal
 SNP G/T G G G G G G G G G G G G G T G
rs243578221
MGI SNP Detail
Alliance Variant		 Chr3:121933757 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 911 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30506441
MGI SNP Detail
Alliance Variant		 Chr3:121933798 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 870 bp proximal
 SNP C/T T T T C C C
rs218255082
MGI SNP Detail
Alliance Variant		 Chr3:121933831 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 837 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs30450152
MGI SNP Detail
Alliance Variant		 Chr3:121933898 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 770 bp proximal
 SNP A/G A A A G A G
rs260811140
MGI SNP Detail
Alliance Variant		 Chr3:121933909 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 759 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs50512129
MGI SNP Detail
Alliance Variant		 Chr3:121933940 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 728 bp proximal
 SNP A/G A G A
rs248795833
MGI SNP Detail
Alliance Variant		 Chr3:121934009 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 659 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263097665
MGI SNP Detail
Alliance Variant		 Chr3:121934040 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 628 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231167827
MGI SNP Detail
Alliance Variant		 Chr3:121934044 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 624 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258034196
MGI SNP Detail
Alliance Variant		 Chr3:121934064 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 604 bp proximal
 SNP A/G G A
rs219502681
MGI SNP Detail
Alliance Variant		 Chr3:121934088 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 580 bp proximal
 SNP C/T T C
rs241277221
MGI SNP Detail
Alliance Variant		 Chr3:121934110 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 558 bp proximal
 SNP A/G A G
rs39732132
MGI SNP Detail
Alliance Variant		 Chr3:121934153 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 515 bp proximal
 SNP A/G G G G G G G A G G G A G G A A
rs216472213
MGI SNP Detail
Alliance Variant		 Chr3:121934168 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 500 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233344744
MGI SNP Detail
Alliance Variant		 Chr3:121934192 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 476 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263065570
MGI SNP Detail
Alliance Variant		 Chr3:121934236 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 432 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs47312841
MGI SNP Detail
Alliance Variant		 Chr3:121934237 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 431 bp proximal
 SNP A/C C A A A
rs253825271
MGI SNP Detail
Alliance Variant		 Chr3:121934254 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 414 bp proximal
 SNP C/T T C
rs256708530
MGI SNP Detail
Alliance Variant		 Chr3:121934262 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 406 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs37912703
MGI SNP Detail
Alliance Variant		 Chr3:121934273 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 395 bp proximal
 SNP C/T C C C C C C C C C C C C C C T
rs242838065
MGI SNP Detail
Alliance Variant		 Chr3:121934274 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 394 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs38191049
MGI SNP Detail
Alliance Variant		 Chr3:121934283 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 385 bp proximal
 SNP A/G G G G G G G G G G G G G G A G
rs254443480
MGI SNP Detail
Alliance Variant		 Chr3:121934339 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 329 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs222060732
MGI SNP Detail
Alliance Variant		 Chr3:121934341 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 327 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265962027
MGI SNP Detail
Alliance Variant		 Chr3:121934354 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 314 bp proximal
 SNP A/G A G
rs45909566
MGI SNP Detail
Alliance Variant		 Chr3:121934378 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 290 bp proximal
 SNP A/G G G A A A
rs252652653
MGI SNP Detail
Alliance Variant		 Chr3:121934386 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 282 bp proximal
 SNP A/G A G
rs50792110
MGI SNP Detail
Alliance Variant		 Chr3:121934420 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 248 bp proximal
 SNP A/C C C A C A
rs231746386
MGI SNP Detail
Alliance Variant		 Chr3:121934430 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 238 bp proximal
 SNP C/T T C
rs38553133
MGI SNP Detail
Alliance Variant		 Chr3:121934450 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 218 bp proximal
 SNP C/T C C T C C C C C C C T T C C
rs247145125
MGI SNP Detail
Alliance Variant		 Chr3:121934456 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 212 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs578771869
MGI SNP Detail
Alliance Variant		 Chr3:121934478 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 190 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs387867906
MGI SNP Detail
Alliance Variant		 Chr3:121934479 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 189 bp proximal
 SNP A/G G G G G A G G G G A G G G G G G A A A G G A G G G A A G A G G G A A A A A A G A A G A G A G G A A G G
rs387531895
MGI SNP Detail
Alliance Variant		 Chr3:121934488 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 180 bp proximal
 SNP C/T T T T T C T T T C C T T T T T T C C C T T C C C C C C T C T T C C C C C C C C C C C C C C C C C C C C
rs246344207
MGI SNP Detail
Alliance Variant		 Chr3:121934503 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 165 bp proximal
 SNP C/T T C
rs227251874
MGI SNP Detail
Alliance Variant		 Chr3:121934558 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 110 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs252086798
MGI SNP Detail
Alliance Variant		 Chr3:121934632 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 36 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs214864677
MGI SNP Detail
Alliance Variant		 Chr3:121934636 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 32 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs47657586
MGI SNP Detail
Alliance Variant		 Chr3:121934644 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 24 bp proximal
 SNP A/C A A C C A
rs46166065
MGI SNP Detail
Alliance Variant		 Chr3:121934646 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 22 bp proximal
 SNP A/G G G A
rs36474510
MGI SNP Detail
Alliance Variant		 Chr3:121934656 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 12 bp proximal
 SNP C/T T T T T T T C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs48472766
MGI SNP Detail
Alliance Variant		 Chr3:121934663 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 5 bp proximal
 SNP A/G G G A A A
rs254516611
MGI SNP Detail
Alliance Variant		 Chr3:121934688 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs45848617
MGI SNP Detail
Alliance Variant		 Chr3:121934711 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 22 bp distal
 SNP C/T T T C C C
rs240045642
MGI SNP Detail
Alliance Variant		 Chr3:121934713 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 24 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258072279
MGI SNP Detail
Alliance Variant		 Chr3:121934758 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 69 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222259368
MGI SNP Detail
Alliance Variant		 Chr3:121934761 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 72 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs46801805
MGI SNP Detail
Alliance Variant		 Chr3:121934839 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 150 bp distal
 SNP C/T C C T T T
rs47403659
MGI SNP Detail
Alliance Variant		 Chr3:121934847 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 158 bp distal
 SNP C/T C C T C T
rs217964155
MGI SNP Detail
Alliance Variant		 Chr3:121934851 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 162 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs38300750
MGI SNP Detail
Alliance Variant		 Chr3:121934852 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 163 bp distal
 SNP C/T T T T C C T C C C T
rs258965588
MGI SNP Detail
Alliance Variant		 Chr3:121934870 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 181 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs232124228
MGI SNP Detail
Alliance Variant		 Chr3:121934871 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584243 within coordinates of
Rr584244 182 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs37228452
MGI SNP Detail
Alliance Variant		 Chr3:121934884 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 195 bp distal
 SNP A/G G G G G G A G G A G G G G G A A
rs36313570
MGI SNP Detail
Alliance Variant		 Chr3:121934901 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 212 bp distal
 SNP A/G G G G G G G G A G G G A G G A A
rs229889598
MGI SNP Detail
Alliance Variant		 Chr3:121934928 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 239 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs244550496
MGI SNP Detail
Alliance Variant		 Chr3:121934933 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 244 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs212312550
MGI SNP Detail
Alliance Variant		 Chr3:121934941 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 252 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs226694012
MGI SNP Detail
Alliance Variant		 Chr3:121934963 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 274 bp distal
 SNP A/G G A
rs580494973
MGI SNP Detail
Alliance Variant		 Chr3:121934976 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 287 bp distal
 SNP A/G A A A A G A A A A G A A A A A A G G G A A G A A A G G A G G A A A G G G G G G A G G A G A G A A G G A A
rs248403753
MGI SNP Detail
Alliance Variant		 Chr3:121934980 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 291 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216277459
MGI SNP Detail
Alliance Variant		 Chr3:121934991 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 302 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs237961984
MGI SNP Detail
Alliance Variant		 Chr3:121935009 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 320 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs37575375
MGI SNP Detail
Alliance Variant		 Chr3:121935013 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 324 bp distal
 SNP A/G G G G G G G A G G G A G G A A
rs36355786
MGI SNP Detail
Alliance Variant		 Chr3:121935028 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 339 bp distal
 SNP A/G A A A G A A G G G A G G G G G G G
rs46863941
MGI SNP Detail
Alliance Variant		 Chr3:121935077 Abca4 Intron
Abca4 Noncoding-Transcript-Variant
Gm43158 within coordinates of
Rr584244 388 bp distal
 SNP A/G G G A A A
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Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory
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