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Mouse SNP Summary
Symbol
Name
ID 		Rr584971
regulatory region 584971
MGI:8047103

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248521470
MGI SNP Detail
Alliance Variant		 Chr3:129005138 Gm27195 within coordinates of
Pitx2 Intron
Rr584971 1993 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs36992098
MGI SNP Detail
Alliance Variant		 Chr3:129005150 Gm27195 within coordinates of
Pitx2 Intron
Rr584971 1981 bp proximal
 SNP G/T G G G G G G T G G G G G G G G
rs234343093
MGI SNP Detail
Alliance Variant		 Chr3:129005161 Gm27195 within coordinates of
Pitx2 Intron
Rr584971 1970 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C C C C C C C C A C C C C A C C A C C C C
rs38406950
MGI SNP Detail
Alliance Variant		 Chr3:129005496 Pitx2 Intron
Rr584971 1635 bp proximal
 SNP C/T T T T T T T T T T C T T T C T
rs224347215
MGI SNP Detail
Alliance Variant		 Chr3:129005648 Pitx2 Intron
Rr584971 1483 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs36791285
MGI SNP Detail
Alliance Variant		 Chr3:129005735 Pitx2 Intron
Rr584971 1396 bp proximal
 SNP G/T T T T T T T G T T T T T T G T
rs263522107
MGI SNP Detail
Alliance Variant		 Chr3:129005756 Pitx2 Intron
Rr584971 1375 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219446263
MGI SNP Detail
Alliance Variant		 Chr3:129005776 Pitx2 Intron
Rr584971 1355 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs239732025
MGI SNP Detail
Alliance Variant		 Chr3:129005804 Pitx2 Intron
Rr584971 1327 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs255959272
MGI SNP Detail
Alliance Variant		 Chr3:129005835 Pitx2 Intron
Rr584970 within coordinates of
Rr584971 1296 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224675721
MGI SNP Detail
Alliance Variant		 Chr3:129005854 Pitx2 Intron
Rr584970 within coordinates of
Rr584971 1277 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs253590792
MGI SNP Detail
Alliance Variant		 Chr3:129006026 Pitx2 Intron
Rr584970 within coordinates of
Rr584971 1105 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs266083737
MGI SNP Detail
Alliance Variant		 Chr3:129006301 Pitx2 Intron
Rr584970 within coordinates of
Rr584971 830 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T C T T T T C T T C T T T T
rs231474261
MGI SNP Detail
Alliance Variant		 Chr3:129006305 Pitx2 Intron
Rr584970 within coordinates of
Rr584971 826 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C C C C C C C C G C C C C G C C G C C C C
rs257942299
MGI SNP Detail
Alliance Variant		 Chr3:129006311 Pitx2 Intron
Rr584970 within coordinates of
Rr584971 820 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213946665
MGI SNP Detail
Alliance Variant		 Chr3:129006316 Pitx2 Intron
Rr584970 within coordinates of
Rr584971 815 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs232376314
MGI SNP Detail
Alliance Variant		 Chr3:129006385 Pitx2 Intron
Rr584970 within coordinates of
Rr584971 746 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C T C C C C C C C
rs242672664
MGI SNP Detail
Alliance Variant		 Chr3:129006398 Pitx2 Intron
Rr584970 within coordinates of
Rr584971 733 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C C C C C C C C A C C C C A C C C C C C C
rs213223031
MGI SNP Detail
Alliance Variant		 Chr3:129006424 Pitx2 Intron
Rr584970 within coordinates of
Rr584971 707 bp proximal
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs234447017
MGI SNP Detail
Alliance Variant		 Chr3:129006436 Pitx2 Intron
Rr584970 within coordinates of
Rr584971 695 bp proximal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs260963252
MGI SNP Detail
Alliance Variant		 Chr3:129006708 Pitx2 Intron
Rr584971 423 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs108188744
MGI SNP Detail
Alliance Variant		 Chr3:129006850 Pitx2 Intron
Rr584971 281 bp proximal
 SNP A/T A A T
rs107908797
MGI SNP Detail
Alliance Variant		 Chr3:129006885 Pitx2 Intron
Rr584971 246 bp proximal
 SNP A/T A A T
rs238875506
MGI SNP Detail
Alliance Variant		 Chr3:129006905 Pitx2 Intron
Rr584971 226 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262109345
MGI SNP Detail
Alliance Variant		 Chr3:129006962 Pitx2 Intron
Rr584971 169 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219498904
MGI SNP Detail
Alliance Variant		 Chr3:129007015 Pitx2 Intron
Rr584971 116 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239577556
MGI SNP Detail
Alliance Variant		 Chr3:129007065 Pitx2 Intron
Rr584971 66 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs256037155
MGI SNP Detail
Alliance Variant		 Chr3:129007218 Cpgi13808 within coordinates of
Pitx2 Intron
Rr584971 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218827414
MGI SNP Detail
Alliance Variant		 Chr3:129007247 Cpgi13808 within coordinates of
Pitx2 Intron
Rr584971 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs250067665
MGI SNP Detail
Alliance Variant		 Chr3:129007252 Cpgi13808 within coordinates of
Pitx2 Intron
Rr584971 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs264268197
MGI SNP Detail
Alliance Variant		 Chr3:129007294 Cpgi13808 within coordinates of
Pitx2 Intron
Rr584971 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231687359
MGI SNP Detail
Alliance Variant		 Chr3:129007328 Cpgi13808 within coordinates of
Pitx2 Intron
Rr584971 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G G A G G G G A G G G G G G G
rs252922840
MGI SNP Detail
Alliance Variant		 Chr3:129007449 Cpgi13808 within coordinates of
Pitx2 Intron
Rr584971 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255139607
MGI SNP Detail
Alliance Variant		 Chr3:129007661 Cpgi13808 within coordinates of
Pitx2 Intron
Pitx2 mRNA-UTR
Rr584971 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226393815
MGI SNP Detail
Alliance Variant		 Chr3:129007710 Cpgi13808 within coordinates of
Pitx2 Intron
Pitx2 mRNA-UTR
Rr584971 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242557918
MGI SNP Detail
Alliance Variant		 Chr3:129007851 Cpgi13808 within coordinates of
Pitx2 Intron
Pitx2 mRNA-UTR
Rr584971 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213285355
MGI SNP Detail
Alliance Variant		 Chr3:129007885 Cpgi13808 within coordinates of
Pitx2 Intron
Pitx2 mRNA-UTR
Rr584971 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs239895496
MGI SNP Detail
Alliance Variant		 Chr3:129007945 Cpgi13808 within coordinates of
Pitx2 Intron
Pitx2 mRNA-UTR
Rr584971 11 bp distal
Tssr31633 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G G T G G G G T G G G G G G G
rs260521829
MGI SNP Detail
Alliance Variant		 Chr3:129007947 Cpgi13808 within coordinates of
Pitx2 Intron
Pitx2 mRNA-UTR
Rr584971 13 bp distal
Tssr31633 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G G G G G G G G C G G G G C G G G G G G G
rs215828584
MGI SNP Detail
Alliance Variant		 Chr3:129007968 Cpgi13808 within coordinates of
Pitx2 Intron
Pitx2 mRNA-UTR
Rr584971 34 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241164213
MGI SNP Detail
Alliance Variant		 Chr3:129008124 Cpgi13808 within coordinates of
Pitx2 Intron
Pitx2 mRNA-UTR
Rr584971 190 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs251414172
MGI SNP Detail
Alliance Variant		 Chr3:129008180 Cpgi13808 within coordinates of
Pitx2 Intron
Pitx2 mRNA-UTR
Rr584971 246 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214551364
MGI SNP Detail
Alliance Variant		 Chr3:129008553 Cpgi13808 within coordinates of
Pitx2 Intron
Rr584971 619 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs232673411
MGI SNP Detail
Alliance Variant		 Chr3:129008559 Cpgi13808 within coordinates of
Pitx2 Intron
Rr584971 625 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G G A G G G G A G G G G G G G
rs585329820
MGI SNP Detail
Alliance Variant		 Chr3:129008633 Cpgi13808 within coordinates of
Pitx2 Intron
Rr584971 699 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C T C C C C C C C
rs578776072
MGI SNP Detail
Alliance Variant		 Chr3:129008634 Cpgi13808 within coordinates of
Pitx2 Intron
Rr584971 700 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs249505199
MGI SNP Detail
Alliance Variant		 Chr3:129008689 Cpgi13808 within coordinates of
Pitx2 Intron
Rr584971 755 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218718556
MGI SNP Detail
Alliance Variant		 Chr3:129008757 Pitx2 Intron
Rr584971 823 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A A A A A A A A T A A A A T A A T A A A A
rs247431211
MGI SNP Detail
Alliance Variant		 Chr3:129008772 Pitx2 Intron
Rr584971 838 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs264175659
MGI SNP Detail
Alliance Variant		 Chr3:129008851 Pitx2 Intron
Rr584971 917 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223941256
MGI SNP Detail
Alliance Variant		 Chr3:129008866 Pitx2 Intron
Rr584971 932 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T C T T T T T T T
rs256841628
MGI SNP Detail
Alliance Variant		 Chr3:129009037 Cpgi13809 within coordinates of
Pitx2 Intron
Rr584971 1103 bp distal
 SNP C/T C T
rs248507295
MGI SNP Detail
Alliance Variant		 Chr3:129009154 Cpgi13809 within coordinates of
Pitx2 Intron
Rr584971 1220 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs255172294
MGI SNP Detail
Alliance Variant		 Chr3:129009159 Cpgi13809 within coordinates of
Pitx2 Intron
Rr584971 1225 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225868579
MGI SNP Detail
Alliance Variant		 Chr3:129009171 Cpgi13809 within coordinates of
Pitx2 Intron
Rr584971 1237 bp distal
Tssr31635 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A A A A A A A A C A A A A C A A C A A A
rs235656801
MGI SNP Detail
Alliance Variant		 Chr3:129009235 Cpgi13809 within coordinates of
Pitx2 Intron
Rr584971 1301 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254881084
MGI SNP Detail
Alliance Variant		 Chr3:129009244 Cpgi13809 within coordinates of
Pitx2 Intron
Rr584971 1310 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234358910
MGI SNP Detail
Alliance Variant		 Chr3:129009304 Cpgi13809 within coordinates of
Pitx2 Coding-Synonymous
Pitx2 Intron
Rr584971 1370 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs255131092
MGI SNP Detail
Alliance Variant		 Chr3:129009394 Cpgi13809 within coordinates of
Pitx2 Coding-Synonymous
Pitx2 Intron
Rr584971 1460 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs216631188
MGI SNP Detail
Alliance Variant		 Chr3:129009415 Cpgi13809 within coordinates of
Pitx2 Coding-Synonymous
Pitx2 Intron
Rr584971 1481 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232488084
MGI SNP Detail
Alliance Variant		 Chr3:129009785 Cpgi13809 within coordinates of
Pitx2 Intron
Pitx2 mRNA-UTR
Rr584971 1851 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G
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Showing SNP(s) 1 - 61 of 61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory