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Mouse SNP Summary
Symbol
Name
ID
Rr585351
regulatory region 585351
MGI:8047483

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245193288
MGI SNP Detail
Alliance Variant
Chr3:131193761 Rr585351 1892 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262806339
MGI SNP Detail
Alliance Variant
Chr3:131193811 Rr585351 1842 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G G C C C C C G C C C C C C C
rs582540964
MGI SNP Detail
Alliance Variant
Chr3:131193817 Rr585351 1836 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G G C C C C C C C C C G C C C
rs585589879
MGI SNP Detail
Alliance Variant
Chr3:131193818 Rr585351 1835 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs228357649
MGI SNP Detail
Alliance Variant
Chr3:131193834 Rr585351 1819 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs250222778
MGI SNP Detail
Alliance Variant
Chr3:131193949 Rr585351 1704 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C C T T T T T T C T T T T T T T
rs218579578
MGI SNP Detail
Alliance Variant
Chr3:131193978 Rr585351 1675 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G G T T T T T T G T T T G T T T
rs240563899
MGI SNP Detail
Alliance Variant
Chr3:131193982 Rr585351 1671 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T T A A A A A A T A A A T A A A
rs245539517
MGI SNP Detail
Alliance Variant
Chr3:131193983 Rr585351 1670 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T T A A A A A A T A A A T A A A
rs216213129
MGI SNP Detail
Alliance Variant
Chr3:131193984 Rr585351 1669 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T T A A A A A A T A A A A A A A
rs579893840
MGI SNP Detail
Alliance Variant
Chr3:131194067 Rr585350 within coordinates of
Rr585351 1586 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231207799
MGI SNP Detail
Alliance Variant
Chr3:131194071 Rr585350 within coordinates of
Rr585351 1582 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G A G G G G G G
rs47192071
MGI SNP Detail
Alliance Variant
Chr3:131194090 Rr585350 within coordinates of
Rr585351 1563 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G A
rs583462197
MGI SNP Detail
Alliance Variant
Chr3:131194113 Rr585350 within coordinates of
Rr585351 1540 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G G A A A A A A G A A A G A A A G
rs586889266
MGI SNP Detail
Alliance Variant
Chr3:131194138 Rr585350 within coordinates of
Rr585351 1515 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs211743781
MGI SNP Detail
Alliance Variant
Chr3:131194139 Rr585350 within coordinates of
Rr585351 1514 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C C T T T T T T C T T T T T T T C
rs579554372
MGI SNP Detail
Alliance Variant
Chr3:131194159 Rr585350 within coordinates of
Rr585351 1494 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G G A A A A A A G A A A G A A A
rs582828491
MGI SNP Detail
Alliance Variant
Chr3:131194183 Rr585350 within coordinates of
Rr585351 1470 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs587494361
MGI SNP Detail
Alliance Variant
Chr3:131194186 Rr585350 within coordinates of
Rr585351 1467 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C C C C C T C C C C C C C
rs236844931
MGI SNP Detail
Alliance Variant
Chr3:131194246 Rr585350 within coordinates of
Rr585351 1407 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs260197828
MGI SNP Detail
Alliance Variant
Chr3:131194247 Rr585350 within coordinates of
Rr585351 1406 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227143192
MGI SNP Detail
Alliance Variant
Chr3:131194274 Rr585350 within coordinates of
Rr585351 1379 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A A T T T T T T A T T T A T T T A
rs240370214
MGI SNP Detail
Alliance Variant
Chr3:131194327 Rr585350 within coordinates of
Rr585351 1326 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs253473316
MGI SNP Detail
Alliance Variant
Chr3:131194331 Rr585350 within coordinates of
Rr585351 1322 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs219488051
MGI SNP Detail
Alliance Variant
Chr3:131194393 Rr585350 within coordinates of
Rr585351 1260 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239066188
MGI SNP Detail
Alliance Variant
Chr3:131194398 Rr585350 within coordinates of
Rr585351 1255 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs265335581
MGI SNP Detail
Alliance Variant
Chr3:131194428 Rr585350 within coordinates of
Rr585351 1225 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs227675632
MGI SNP Detail
Alliance Variant
Chr3:131194484 Rr585350 within coordinates of
Rr585351 1169 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G G A A A A A A G A A A A A A A G
rs245136032
MGI SNP Detail
Alliance Variant
Chr3:131194530 Rr585350 within coordinates of
Rr585351 1123 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C C C C C C C C C C C C C T
rs264196650
MGI SNP Detail
Alliance Variant
Chr3:131194534 Rr585350 within coordinates of
Rr585351 1119 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T T A A A A A A A A A A A A A A T
rs229546779
MGI SNP Detail
Alliance Variant
Chr3:131194555 Rr585350 within coordinates of
Rr585351 1098 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C C C C C C C C C T C C C T
rs245630692
MGI SNP Detail
Alliance Variant
Chr3:131194585 Rr585350 within coordinates of
Rr585351 1068 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T T G G G G G G T G G G G G G G T
rs216181238
MGI SNP Detail
Alliance Variant
Chr3:131194608 Rr585350 within coordinates of
Rr585351 1045 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs584837872
MGI SNP Detail
Alliance Variant
Chr3:131194624 Rr585350 within coordinates of
Rr585351 1029 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs587201732
MGI SNP Detail
Alliance Variant
Chr3:131194625 Rr585350 within coordinates of
Rr585351 1028 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs581227835
MGI SNP Detail
Alliance Variant
Chr3:131194630 Rr585350 within coordinates of
Rr585351 1023 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs249740687
MGI SNP Detail
Alliance Variant
Chr3:131194777 Rr585351 876 bp proximal
Sgms2 Intron
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
Tssr35707 within coordinates of
SNP A/G A G
rs251238597
MGI SNP Detail
Alliance Variant
Chr3:131194815 Rr585351 838 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A G G G G G G G G G G A G G G A
rs211925950
MGI SNP Detail
Alliance Variant
Chr3:131194817 Rr585351 836 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T T A A A A A A A A A A T A A A T
rs235133459
MGI SNP Detail
Alliance Variant
Chr3:131194829 Rr585351 824 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263635017
MGI SNP Detail
Alliance Variant
Chr3:131194942 Rr585351 711 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs218765177
MGI SNP Detail
Alliance Variant
Chr3:131194944 Rr585351 709 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs233866354
MGI SNP Detail
Alliance Variant
Chr3:131195009 Rr585351 644 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs253618778
MGI SNP Detail
Alliance Variant
Chr3:131195104 Rr585351 549 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs219453944
MGI SNP Detail
Alliance Variant
Chr3:131195106 Rr585351 547 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C C T T C T T T C T T T C T T T C
rs239597293
MGI SNP Detail
Alliance Variant
Chr3:131195118 Rr585351 535 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258005369
MGI SNP Detail
Alliance Variant
Chr3:131195147 Rr585351 506 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220345606
MGI SNP Detail
Alliance Variant
Chr3:131195184 Rr585351 469 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs242422303
MGI SNP Detail
Alliance Variant
Chr3:131195256 Rr585351 397 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs265940903
MGI SNP Detail
Alliance Variant
Chr3:131195341 Rr585351 312 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A A T T T T T T A T T T A T T T A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229335932
MGI SNP Detail
Alliance Variant
Chr3:131195426 Cpgi13839 within coordinates of
Rr585351 227 bp proximal
Sgms2 Intron
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C C T T T T T T C T T T T T T T C
rs239599910
MGI SNP Detail
Alliance Variant
Chr3:131195438 Cpgi13839 within coordinates of
Rr585351 215 bp proximal
Sgms2 Intron
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T C C T T T T T T C T T T C T T T C
rs258506197
MGI SNP Detail
Alliance Variant
Chr3:131195509 Cpgi13839 within coordinates of
Rr585351 144 bp proximal
Sgms2 Intron
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
Tssr31735 within coordinates of
Tssr35709 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T
rs225552042
MGI SNP Detail
Alliance Variant
Chr3:131195528 Cpgi13839 within coordinates of
Rr585351 125 bp proximal
Sgms2 Intron
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
Tssr35710 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T A T T A A T T T T T T A T T A T T T A
rs256619989
MGI SNP Detail
Alliance Variant
Chr3:131195595 Cpgi13839 within coordinates of
Rr585351 58 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs211811226
MGI SNP Detail
Alliance Variant
Chr3:131195621 Cpgi13839 within coordinates of
Rr585351 32 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C C C C C T C C C C C C T
rs228938290
MGI SNP Detail
Alliance Variant
Chr3:131195623 Cpgi13839 within coordinates of
Rr585351 30 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C C T T C T T T C T T C T T T C
rs253746483
MGI SNP Detail
Alliance Variant
Chr3:131195633 Cpgi13839 within coordinates of
Rr585351 20 bp proximal
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T C C T T T T T T C T T C T T T C
rs217089496
MGI SNP Detail
Alliance Variant
Chr3:131195666 Cpgi13839 within coordinates of
Rr585351 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs107780453
MGI SNP Detail
Alliance Variant
Chr3:131195683 Cpgi13839 within coordinates of
Rr585351 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
Tssr35711 within coordinates of
SNP C/T C T
rs247188419
MGI SNP Detail
Alliance Variant
Chr3:131195777 Cpgi13839 within coordinates of
Rr585351 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
Tssr1056 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G G A A G A A A G A A A G A A A G
rs213639502
MGI SNP Detail
Alliance Variant
Chr3:131195876 Cpgi13839 within coordinates of
Rr585351 within coordinates of
Sgms2 Intron
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs236844468
MGI SNP Detail
Alliance Variant
Chr3:131195913 Cpgi13839 within coordinates of
Rr585351 within coordinates of
Sgms2 Intron
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G A A G G G G G G G G G G G A G G G A G G G G G G G G G G G G G G G A A G G G G G G
rs260770501
MGI SNP Detail
Alliance Variant
Chr3:131195952 Cpgi13839 within coordinates of
Rr585351 within coordinates of
Sgms2 Intron
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
Tssr35713 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T G T T G T T T G T T T G T T T G
rs221368013
MGI SNP Detail
Alliance Variant
Chr3:131196045 Cpgi13839 within coordinates of
Rr585351 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G
rs237401522
MGI SNP Detail
Alliance Variant
Chr3:131196055 Cpgi13839 within coordinates of
Rr585351 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/G G G G G G G G G G G G G G G G C G G G C G G G G G G G G G G G C G G G G G G G G G G G G
rs585816253
MGI SNP Detail
Alliance Variant
Chr3:131196102 Cpgi13839 within coordinates of
Gm36753 within coordinates of
Rr585351 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260445367
MGI SNP Detail
Alliance Variant
Chr3:131196142 Cpgi13839 within coordinates of
Gm36753 within coordinates of
Rr585351 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
Tssr31736 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222724077
MGI SNP Detail
Alliance Variant
Chr3:131196147 Cpgi13839 within coordinates of
Gm36753 within coordinates of
Rr585351 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
Tssr31736 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs239313710
MGI SNP Detail
Alliance Variant
Chr3:131196170 Cpgi13839 within coordinates of
Gm36753 within coordinates of
Rr585351 5 bp distal
Rr585352 within coordinates of
Sgms2 Intron
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
Sgms2 Splice-Site
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258460779
MGI SNP Detail
Alliance Variant
Chr3:131196205 Cpgi13839 within coordinates of
Gm36753 within coordinates of
Rr585351 40 bp distal
Rr585352 within coordinates of
Sgms2 Intron
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C C C C C C C G C C C C C C C C C C C C
rs219710943
MGI SNP Detail
Alliance Variant
Chr3:131196435 Cpgi13839 within coordinates of
Gm36753 within coordinates of
Rr585351 270 bp distal
Rr585352 within coordinates of
Rr585353 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A G A A A A
rs244661579
MGI SNP Detail
Alliance Variant
Chr3:131196501 Cpgi13839 within coordinates of
Gm36753 within coordinates of
Rr585351 336 bp distal
Rr585352 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
Tssr35717 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G
rs264719800
MGI SNP Detail
Alliance Variant
Chr3:131196762 Gm36753 within coordinates of
Rr585351 597 bp distal
Rr585352 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
Tssr35719 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs229206525
MGI SNP Detail
Alliance Variant
Chr3:131196800 Gm36753 within coordinates of
Rr585351 635 bp distal
Rr585352 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258952086
MGI SNP Detail
Alliance Variant
Chr3:131196801 Gm36753 within coordinates of
Rr585351 636 bp distal
Rr585352 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs261096104
MGI SNP Detail
Alliance Variant
Chr3:131196849 Gm36753 within coordinates of
Rr585351 684 bp distal
Rr585352 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs6293819
MGI SNP Detail
Alliance Variant
Chr3:131196859 Gm36753 within coordinates of
Rr585351 694 bp distal
Rr585352 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/C C A
rs6293840
MGI SNP Detail
Alliance Variant
Chr3:131196861 Gm36753 within coordinates of
Rr585351 696 bp distal
Rr585352 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP A/C A C
rs6293847
MGI SNP Detail
Alliance Variant
Chr3:131196868 Gm36753 within coordinates of
Rr585351 703 bp distal
Rr585352 within coordinates of
Sgms2 Intron
Sgms2 Noncoding-Transcript-Variant
SNP C/T T C C
rs6293921
MGI SNP Detail
Alliance Variant
Chr3:131196904 Gm36753 within coordinates of
Rr585351 739 bp distal
Rr585352 within coordinates of
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
SNP A/G G A
rs6293923
MGI SNP Detail
Alliance Variant
Chr3:131196908 Gm36753 within coordinates of
Rr585351 743 bp distal
Rr585352 within coordinates of
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
SNP A/G G A
rs6293973
MGI SNP Detail
Alliance Variant
Chr3:131196937 Gm36753 within coordinates of
Rr585351 772 bp distal
Rr585352 within coordinates of
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
SNP A/C A C
rs249148698
MGI SNP Detail
Alliance Variant
Chr3:131196940 Gm36753 within coordinates of
Rr585351 775 bp distal
Rr585352 within coordinates of
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A
rs213103223
MGI SNP Detail
Alliance Variant
Chr3:131196985 Gm36753 within coordinates of
Rr585351 820 bp distal
Rr585352 within coordinates of
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs239371748
MGI SNP Detail
Alliance Variant
Chr3:131197017 Gm36753 within coordinates of
Rr585351 852 bp distal
Rr585352 within coordinates of
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs252724925
MGI SNP Detail
Alliance Variant
Chr3:131197141 Gm36753 within coordinates of
Rr585351 976 bp distal
Sgms2 mRNA-UTR
Sgms2 Noncoding-Transcript-Variant
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T
rs222887263
MGI SNP Detail
Chr3:131197239 Gm36753 within coordinates of
Rr585351 1074 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C
rs232893261
MGI SNP Detail
Chr3:131197243 Gm36753 within coordinates of
Rr585351 1078 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs251988554
MGI SNP Detail
Chr3:131197255 Gm36753 within coordinates of
Rr585351 1090 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219468416
MGI SNP Detail
Chr3:131197348 Gm36753 within coordinates of
Rr585351 1183 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A G G G G G G A G G G G G G G A
rs247294508
MGI SNP Detail
Chr3:131197414 Gm36753 within coordinates of
Rr585351 1249 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs261753532
MGI SNP Detail
Chr3:131197468 Gm36753 within coordinates of
Rr585351 1303 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs221354568
MGI SNP Detail
Chr3:131197508 Gm36753 within coordinates of
Rr585351 1343 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs247832167
MGI SNP Detail
Chr3:131197604 Gm36753 within coordinates of
Rr585351 1439 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs261070974
MGI SNP Detail
Chr3:131197723 Gm36753 within coordinates of
Rr585351 1558 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs227113674
MGI SNP Detail
Chr3:131197735 Gm36753 within coordinates of
Rr585351 1570 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs247086768
MGI SNP Detail
Chr3:131197832 Gm36753 within coordinates of
Rr585351 1667 bp distal
SNP C/T T T T T T T T T T T C C T T T T T T T C T T C C C T T C C T T T T C T T C C T T C T T T C C C T C T T T C
rs257221642
MGI SNP Detail
Chr3:131197860 Gm36753 within coordinates of
Rr585351 1695 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs230664625
MGI SNP Detail
Chr3:131197870 Gm36753 within coordinates of
Rr585351 1705 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 100 of 105

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

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