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Mouse SNP Summary
Symbol
Name
ID 		Rr586088
regulatory region 586088
MGI:8048220

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243188976
MGI SNP Detail
Alliance Variant		 Chr3:137848856 C230076A16Rik within coordinates of
Mttp Intron
Rr375797 within coordinates of
Rr586084 within coordinates of
Rr586088 2000 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264695821
MGI SNP Detail
Alliance Variant		 Chr3:137848859 C230076A16Rik within coordinates of
Mttp Intron
Rr375797 within coordinates of
Rr586084 within coordinates of
Rr586088 1997 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs231075881
MGI SNP Detail
Alliance Variant		 Chr3:137848892 C230076A16Rik within coordinates of
Mttp Intron
Rr375797 within coordinates of
Rr586084 within coordinates of
Rr586088 1964 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs255572181
MGI SNP Detail
Alliance Variant		 Chr3:137848924 C230076A16Rik within coordinates of
Mttp Intron
Rr375797 within coordinates of
Rr586084 within coordinates of
Rr586088 1932 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30892349
MGI SNP Detail
Alliance Variant		 Chr3:137848977 C230076A16Rik within coordinates of
Mttp mRNA-UTR
Rr375797 within coordinates of
Rr586084 within coordinates of
Rr586088 1879 bp proximal
 SNP A/G G G G G G G G G G A G G A G
rs240358442
MGI SNP Detail
Alliance Variant		 Chr3:137848981 C230076A16Rik within coordinates of
Mttp mRNA-UTR
Rr375797 within coordinates of
Rr586084 within coordinates of
Rr586088 1875 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs30892351
MGI SNP Detail
Alliance Variant		 Chr3:137849034 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Mttp mRNA-UTR
Rr375797 within coordinates of
Rr586084 within coordinates of
Rr586088 1822 bp proximal
 SNP G/T G G G G G G T G G G T G G T G
rs30892353
MGI SNP Detail
Alliance Variant		 Chr3:137849052 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Mttp mRNA-UTR
Rr375797 within coordinates of
Rr586084 within coordinates of
Rr586088 1804 bp proximal
 SNP C/G C C C C C C G C C C G C C G C
rs30893205
MGI SNP Detail
Alliance Variant		 Chr3:137849102 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Mttp mRNA-UTR
Rr375797 within coordinates of
Rr586084 within coordinates of
Rr586088 1754 bp proximal
 SNP C/T C C C C C C T C C C C C C C C
rs30893207
MGI SNP Detail
Alliance Variant		 Chr3:137849117 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Mttp mRNA-UTR
Rr375797 within coordinates of
Rr586084 within coordinates of
Rr586088 1739 bp proximal
Tssr35880 within coordinates of
 SNP A/T A A A A A A A A A A T A A T A
rs222813728
MGI SNP Detail
Alliance Variant		 Chr3:137849135 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Mttp mRNA-UTR
Rr375797 within coordinates of
Rr586084 within coordinates of
Rr586088 1721 bp proximal
Tssr35880 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A G A A A A A G G A A A A A A A G A A A A
rs235987984
MGI SNP Detail
Alliance Variant		 Chr3:137849172 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Mttp mRNA-UTR
Rr375797 within coordinates of
Rr586085 within coordinates of
Rr586088 1684 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs263256126
MGI SNP Detail
Alliance Variant		 Chr3:137849282 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586085 within coordinates of
Rr586088 1574 bp proximal
Trmt10a mRNA-UTR
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs30893209
MGI SNP Detail
Alliance Variant		 Chr3:137849284 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586085 within coordinates of
Rr586088 1572 bp proximal
Trmt10a mRNA-UTR
 SNP A/C C C C C C C A C C C A C C A C
rs241472107
MGI SNP Detail
Alliance Variant		 Chr3:137849320 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1536 bp proximal
Trmt10a mRNA-UTR
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A G G A A A A A A A A A A A A
rs258978141
MGI SNP Detail
Alliance Variant		 Chr3:137849337 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1519 bp proximal
Trmt10a mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C T T C C C C C C C C C C C
rs218679189
MGI SNP Detail
Alliance Variant		 Chr3:137849354 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1502 bp proximal
Trmt10a mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs30893211
MGI SNP Detail
Alliance Variant		 Chr3:137849366 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1490 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
 SNP C/G G G G G G G G G G G G G G C G
rs30893213
MGI SNP Detail
Alliance Variant		 Chr3:137849432 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1424 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
 SNP C/T C C C C C C C T C C C C
rs30894065
MGI SNP Detail
Alliance Variant		 Chr3:137849451 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1405 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
Tssr35881 within coordinates of
 SNP A/G A A A A A A G A A A A A G A
rs30894067
MGI SNP Detail
Alliance Variant		 Chr3:137849517 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1339 bp proximal
Trmt10a Intron
 SNP A/G G G G G G G A G G G G G G G G
rs250862761
MGI SNP Detail
Alliance Variant		 Chr3:137849536 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1320 bp proximal
Trmt10a Intron
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs30894069
MGI SNP Detail
Alliance Variant		 Chr3:137849559 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1297 bp proximal
Trmt10a Intron
 SNP C/T T T T T T C T T T T C T T C T T
rs30894071
MGI SNP Detail
Alliance Variant		 Chr3:137849593 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1263 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
Tssr31946 within coordinates of
 SNP G/T G G G G G T G G G G G
rs249090732
MGI SNP Detail
Alliance Variant		 Chr3:137849603 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1253 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
Tssr31946 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C T T C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216979932
MGI SNP Detail
Alliance Variant		 Chr3:137849639 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1217 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
Tssr31947 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231136822
MGI SNP Detail
Alliance Variant		 Chr3:137849640 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1216 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
Tssr31947 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30894073
MGI SNP Detail
Alliance Variant		 Chr3:137849642 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1214 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
Tssr31947 within coordinates of
 SNP A/T T T T T T T A T T T T T T T T
rs214406439
MGI SNP Detail
Alliance Variant		 Chr3:137849646 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1210 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
Tssr31947 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237699322
MGI SNP Detail
Alliance Variant		 Chr3:137849660 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1196 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
Tssr31948 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs259170309
MGI SNP Detail
Alliance Variant		 Chr3:137849672 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1184 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
Tssr31948 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs223980089
MGI SNP Detail
Alliance Variant		 Chr3:137849676 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1180 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
Tssr31948 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs235063074
MGI SNP Detail
Alliance Variant		 Chr3:137849700 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1156 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A G A A A A A A G A A A A
rs252555052
MGI SNP Detail
Alliance Variant		 Chr3:137849778 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 1078 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs264750630
MGI SNP Detail
Alliance Variant		 Chr3:137849862 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 994 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
Trmt10a Splice-Site
 SNP G G G
rs235843881
MGI SNP Detail
Alliance Variant		 Chr3:137849870 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 986 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265288274
MGI SNP Detail
Alliance Variant		 Chr3:137849871 C230076A16Rik within coordinates of
Cpgi13871 within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 985 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs30894905
MGI SNP Detail
Alliance Variant		 Chr3:137850001 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 855 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
 SNP C/T C C C C C C C C C C C C T C
rs30894907
MGI SNP Detail
Alliance Variant		 Chr3:137850045 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 811 bp proximal
Trmt10a Intron
Trmt10a mRNA-UTR
 SNP A/T A A A A A A T A A A A A A A A
rs30894909
MGI SNP Detail
Alliance Variant		 Chr3:137850067 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 789 bp proximal
Trmt10a Intron
Trmt10a Splice-Site
 SNP A/T A A A A A T A A A T A A T A
rs49878901
MGI SNP Detail
Alliance Variant		 Chr3:137850080 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 776 bp proximal
Trmt10a Intron
 SNP A A
rs242985925
MGI SNP Detail
Alliance Variant		 Chr3:137850117 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 739 bp proximal
Trmt10a Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30894911
MGI SNP Detail
Alliance Variant		 Chr3:137850293 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 563 bp proximal
Trmt10a Intron
 SNP A/G G G G G G G G G G A G G A G
rs583345083
MGI SNP Detail
Alliance Variant		 Chr3:137850319 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 537 bp proximal
Trmt10a Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs585820619
MGI SNP Detail
Alliance Variant		 Chr3:137850321 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 535 bp proximal
Trmt10a Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs225298105
MGI SNP Detail
Alliance Variant		 Chr3:137850374 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 482 bp proximal
Trmt10a Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T G T T T T T T T T G T T T T
rs249453534
MGI SNP Detail
Alliance Variant		 Chr3:137850390 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 466 bp proximal
Trmt10a Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs215680964
MGI SNP Detail
Alliance Variant		 Chr3:137850394 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 462 bp proximal
Trmt10a Intron
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229439362
MGI SNP Detail
Alliance Variant		 Chr3:137850408 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 448 bp proximal
Trmt10a Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257909404
MGI SNP Detail
Alliance Variant		 Chr3:137850436 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 420 bp proximal
Trmt10a Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214940515
MGI SNP Detail
Alliance Variant		 Chr3:137850455 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 401 bp proximal
Trmt10a Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs30894913
MGI SNP Detail
Alliance Variant		 Chr3:137850539 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 317 bp proximal
Trmt10a Intron
 SNP A/G A A A A A A A A A A G A A G A
rs30895645
MGI SNP Detail
Alliance Variant		 Chr3:137850569 C230076A16Rik within coordinates of
Rr375797 within coordinates of
Rr586087 within coordinates of
Rr586088 287 bp proximal
Trmt10a Intron
 SNP A/C A A A A A C A A A A A A A
rs212748260
MGI SNP Detail
Alliance Variant		 Chr3:137850583 C230076A16Rik within coordinates of
Rr586087 within coordinates of
Rr586088 273 bp proximal
Trmt10a Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs229905287
MGI SNP Detail
Alliance Variant		 Chr3:137850584 C230076A16Rik within coordinates of
Rr586087 within coordinates of
Rr586088 272 bp proximal
Trmt10a Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257833493
MGI SNP Detail
Alliance Variant		 Chr3:137850592 C230076A16Rik within coordinates of
Rr586087 within coordinates of
Rr586088 264 bp proximal
Trmt10a Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs222134582
MGI SNP Detail
Alliance Variant		 Chr3:137850603 C230076A16Rik within coordinates of
Rr586087 within coordinates of
Rr586088 253 bp proximal
Trmt10a Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243186833
MGI SNP Detail
Alliance Variant		 Chr3:137850757 Rr398069 within coordinates of
Rr586087 within coordinates of
Rr586088 99 bp proximal
Trmt10a Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs263399907
MGI SNP Detail
Alliance Variant		 Chr3:137850769 Rr398069 within coordinates of
Rr586087 within coordinates of
Rr586088 87 bp proximal
Trmt10a Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs221140318
MGI SNP Detail
Alliance Variant		 Chr3:137850873 Rr398069 within coordinates of
Rr586087 within coordinates of
Rr586088 within coordinates of
Trmt10a Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs242950610
MGI SNP Detail
Alliance Variant		 Chr3:137850875 Rr398069 within coordinates of
Rr586087 within coordinates of
Rr586088 within coordinates of
Trmt10a Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260802619
MGI SNP Detail
Alliance Variant		 Chr3:137850891 Rr398069 within coordinates of
Rr586087 within coordinates of
Rr586088 14 bp distal
Trmt10a Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225216364
MGI SNP Detail
Alliance Variant		 Chr3:137850916 Rr398069 within coordinates of
Rr586087 within coordinates of
Rr586088 39 bp distal
Trmt10a Intron
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs30895647
MGI SNP Detail
Alliance Variant		 Chr3:137850932 Rr398069 within coordinates of
Rr586087 within coordinates of
Rr586088 55 bp distal
Trmt10a Intron
 SNP A/G A A A A A G A A G A A G
rs30895649
MGI SNP Detail
Alliance Variant		 Chr3:137850962 Rr398069 within coordinates of
Rr586087 within coordinates of
Rr586088 85 bp distal
Trmt10a Intron
 SNP A/G G G G G G A G G G G G G
rs230682411
MGI SNP Detail
Alliance Variant		 Chr3:137850972 Rr398069 within coordinates of
Rr586087 within coordinates of
Rr586088 95 bp distal
Trmt10a Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G A A G G G G G G G G G G G
rs30895651
MGI SNP Detail
Alliance Variant		 Chr3:137850985 Rr398069 within coordinates of
Rr586087 within coordinates of
Rr586088 108 bp distal
Trmt10a Intron
 SNP C/T T T T T T T C T T T T T
rs214904867
MGI SNP Detail
Alliance Variant		 Chr3:137850997 Rr586087 within coordinates of
Rr586088 120 bp distal
Trmt10a Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs228962969
MGI SNP Detail
Alliance Variant		 Chr3:137850998 Rr586087 within coordinates of
Rr586088 121 bp distal
Trmt10a Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs246479200
MGI SNP Detail
Alliance Variant		 Chr3:137851024 Rr586087 within coordinates of
Rr586088 147 bp distal
Trmt10a Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T C C T T T T T T T T T T T
rs579442433
MGI SNP Detail
Alliance Variant		 Chr3:137851075 Rr586087 within coordinates of
Rr586088 198 bp distal
Trmt10a Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs212711375
MGI SNP Detail
Alliance Variant		 Chr3:137851099 Rr586087 within coordinates of
Rr586088 222 bp distal
Trmt10a Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234538983
MGI SNP Detail
Alliance Variant		 Chr3:137851105 Rr586087 within coordinates of
Rr586088 228 bp distal
Trmt10a Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262386972
MGI SNP Detail
Alliance Variant		 Chr3:137851188 Rr586088 311 bp distal
Trmt10a Intron
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs213677245
MGI SNP Detail
Alliance Variant		 Chr3:137851238 Rr586088 361 bp distal
Trmt10a Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241043377
MGI SNP Detail
Alliance Variant		 Chr3:137851281 Rr586088 404 bp distal
Trmt10a Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs259507121
MGI SNP Detail
Alliance Variant		 Chr3:137851314 Rr586088 437 bp distal
Trmt10a Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C T T C C C C C C C C C C C C
rs221074473
MGI SNP Detail
Alliance Variant		 Chr3:137851359 Rr586088 482 bp distal
Trmt10a Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs236492059
MGI SNP Detail
Alliance Variant		 Chr3:137851384 Rr586088 507 bp distal
Trmt10a Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs254598833
MGI SNP Detail
Alliance Variant		 Chr3:137851446 Rr586088 569 bp distal
Trmt10a Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219062769
MGI SNP Detail
Alliance Variant		 Chr3:137851449 Rr586088 572 bp distal
Trmt10a Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241494263
MGI SNP Detail
Alliance Variant		 Chr3:137851510 Rr586088 633 bp distal
Trmt10a Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265363883
MGI SNP Detail
Alliance Variant		 Chr3:137851523 Rr586088 646 bp distal
Trmt10a Intron
Trmt10a mRNA-UTR
Trmt10a Splice-Site
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs30895653
MGI SNP Detail
Alliance Variant		 Chr3:137851639 Rr586088 762 bp distal
Trmt10a Intron
Trmt10a mRNA-UTR
Trmt10a Splice-Site
 SNP C/T T T T T T C C T T T C T T C T
rs249591626
MGI SNP Detail
Alliance Variant		 Chr3:137851641 Rr586088 764 bp distal
Trmt10a Intron
Trmt10a mRNA-UTR
Trmt10a Splice-Site
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257672976
MGI SNP Detail
Alliance Variant		 Chr3:137851680 Rr586088 803 bp distal
Trmt10a Intron
Trmt10a mRNA-UTR
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T G G T T T T T T T G T T T T
rs228931852
MGI SNP Detail
Alliance Variant		 Chr3:137851687 Rr586088 810 bp distal
Trmt10a Intron
Trmt10a Splice-Site
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246443570
MGI SNP Detail
Alliance Variant		 Chr3:137851699 Rr586088 822 bp distal
Trmt10a Intron
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T A A T T T T T T T A T T T T
rs254395400
MGI SNP Detail
Alliance Variant		 Chr3:137851779 Rr586088 902 bp distal
Trmt10a Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30896465
MGI SNP Detail
Alliance Variant		 Chr3:137851798 Rr586088 921 bp distal
Trmt10a Intron
 SNP A/G A A A A A G A A A A A A G A
rs251360737
MGI SNP Detail
Alliance Variant		 Chr3:137851839 Rr586088 962 bp distal
Trmt10a Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214065148
MGI SNP Detail
Alliance Variant		 Chr3:137851862 Rr586088 985 bp distal
Trmt10a Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238592609
MGI SNP Detail
Alliance Variant		 Chr3:137851892 Rr586088 1015 bp distal
Trmt10a Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs246418326
MGI SNP Detail
Alliance Variant		 Chr3:137851906 Rr586088 1029 bp distal
Trmt10a Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C A A C C C C C C C A C C C C
rs217438935
MGI SNP Detail
Alliance Variant		 Chr3:137851926 Rr586088 1049 bp distal
Trmt10a Intron
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs236451880
MGI SNP Detail
Alliance Variant		 Chr3:137851966 Rr586088 1089 bp distal
Trmt10a Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30503301
MGI SNP Detail
Alliance Variant		 Chr3:137851987 Rr586088 1110 bp distal
Trmt10a Intron
 SNP C/T T T C T T T
rs221741153
MGI SNP Detail
Alliance Variant		 Chr3:137852009 Rr586088 1132 bp distal
Trmt10a Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236504767
MGI SNP Detail
Alliance Variant		 Chr3:137852173 Rr586088 1296 bp distal
Trmt10a Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T C C T T T T T T T T T T T T
rs30896467
MGI SNP Detail
Alliance Variant		 Chr3:137852235 Rr586088 1358 bp distal
Trmt10a Intron
 SNP C/T T T T T T T T C T C T
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Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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