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Mouse SNP Summary
Symbol
Name
ID 		Rr586600
regulatory region 586600
MGI:8048732

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Showing SNP(s) 1 - 42 of 42

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30801966
MGI SNP Detail
Alliance Variant		 Chr3:143906304 Lmo4 Intron
Rr375847 within coordinates of
Rr586598 within coordinates of
Rr586600 1779 bp proximal
 SNP A/T A T T T
rs260574771
MGI SNP Detail
Alliance Variant		 Chr3:143906395 Lmo4 Intron
Rr375847 within coordinates of
Rr586600 1688 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs52479004
MGI SNP Detail
Alliance Variant		 Chr3:143906450 Lmo4 Intron
Rr586600 1633 bp proximal
 SNP G G G
rs231068673
MGI SNP Detail
Alliance Variant		 Chr3:143906455 Lmo4 Intron
Rr586600 1628 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31159998
MGI SNP Detail
Alliance Variant		 Chr3:143906460 Lmo4 Intron
Rr586600 1623 bp proximal
 SNP C/T T C C C
rs108712918
MGI SNP Detail
Alliance Variant		 Chr3:143906487 Lmo4 Intron
Rr586600 1596 bp proximal
 SNP G G G G
rs30758135
MGI SNP Detail
Alliance Variant		 Chr3:143906526 Lmo4 Intron
Rr586600 1557 bp proximal
 SNP G/T G T T T
rs214438576
MGI SNP Detail
Alliance Variant		 Chr3:143906759 Lmo4 Intron
Rr586600 1324 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C G C C C C C G G C C C C C G C C C C C C C G C C C C
rs234179307
MGI SNP Detail
Alliance Variant		 Chr3:143906866 Lmo4 Intron
Rr586600 1217 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259617758
MGI SNP Detail
Alliance Variant		 Chr3:143906912 Lmo4 Intron
Rr586600 1171 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225093560
MGI SNP Detail
Alliance Variant		 Chr3:143907125 Lmo4 Intron
Rr586600 958 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs239358374
MGI SNP Detail
Alliance Variant		 Chr3:143907152 Lmo4 Intron
Rr586600 931 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A G A A A A A A A A A A A A A A A A A A
rs264119615
MGI SNP Detail
Alliance Variant		 Chr3:143907246 Lmo4 Intron
Rr586600 837 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G G A A A A A G A A A A A A A G A A A A
rs217951798
MGI SNP Detail
Alliance Variant		 Chr3:143907323 Lmo4 Intron
Rr586600 760 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T T T T T T T C T T T T
rs236632640
MGI SNP Detail
Alliance Variant		 Chr3:143907338 Lmo4 Intron
Rr586600 745 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255091105
MGI SNP Detail
Alliance Variant		 Chr3:143907352 Lmo4 Intron
Rr586600 731 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219763029
MGI SNP Detail
Alliance Variant		 Chr3:143907376 Lmo4 Intron
Rr586600 707 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247571550
MGI SNP Detail
Alliance Variant		 Chr3:143907378 Lmo4 Intron
Rr586600 705 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs13474998
MGI SNP Detail
Alliance Variant		 Chr3:143907630 Cpgi13894 within coordinates of
Lmo4 Coding-Synonymous
Rr586600 453 bp proximal
 SNP C/T C T T T
rs234423726
MGI SNP Detail
Alliance Variant		 Chr3:143907935 Cpgi13894 within coordinates of
Lmo4 Intron
Lmo4 mRNA-UTR
Rr586600 148 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs254977450
MGI SNP Detail
Alliance Variant		 Chr3:143907988 Cpgi13894 within coordinates of
Lmo4 Intron
Lmo4 mRNA-UTR
Rr586600 95 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C
rs256246827
MGI SNP Detail
Alliance Variant		 Chr3:143908082 Cpgi13894 within coordinates of
Lmo4 Intron
Lmo4 mRNA-UTR
Rr586600 1 bp proximal
Tssr35965 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T C T T T T T T C T T T T T T T T T T T T
rs225351937
MGI SNP Detail
Alliance Variant		 Chr3:143908356 Cpgi13894 within coordinates of
Lmo4 Intron
Rr586600 within coordinates of
Tssr35967 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs245324984
MGI SNP Detail
Alliance Variant		 Chr3:143908389 Cpgi13894 within coordinates of
Lmo4 Intron
Rr586600 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G C G G G G C G G G G C C G G G G G C G G G G G G G G G G G G
rs214501332
MGI SNP Detail
Alliance Variant		 Chr3:143908411 Cpgi13894 within coordinates of
Lmo4 Intron
Rr586600 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233995619
MGI SNP Detail
Alliance Variant		 Chr3:143908502 Lmo4 Intron
Rr586600 within coordinates of
 SNP G/T T G T T G T G T G G T T
rs218274936
MGI SNP Detail
Alliance Variant		 Chr3:143908955 Lmo4 Intron
Rr406521 within coordinates of
Rr586600 308 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs243211295
MGI SNP Detail
Alliance Variant		 Chr3:143909106 Lmo4 Intron
Rr406521 within coordinates of
Rr586600 459 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30701473
MGI SNP Detail
Alliance Variant		 Chr3:143909235 Lmo4 Intron
Rr406521 within coordinates of
Rr586600 588 bp distal
 SNP C/T C T T T
rs217829389
MGI SNP Detail
Alliance Variant		 Chr3:143909238 Lmo4 Intron
Rr406521 within coordinates of
Rr586600 591 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs230724658
MGI SNP Detail
Alliance Variant		 Chr3:143909270 Lmo4 Intron
Rr406521 within coordinates of
Rr586600 623 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249652966
MGI SNP Detail
Alliance Variant		 Chr3:143909397 Lmo4 Intron
Rr406521 within coordinates of
Rr586600 750 bp distal
 SNP C/G C C C G G G G G C G G G G G G G G G G G G G G G G G G G G G G C G G G G C C G G G G G G G G G G G G G G G
rs31390119
MGI SNP Detail
Alliance Variant		 Chr3:143909539 Lmo4 Intron
Rr406521 within coordinates of
Rr586600 892 bp distal
 SNP A/C A A A C
rs244768876
MGI SNP Detail
Alliance Variant		 Chr3:143909585 Lmo4 Intron
Rr406521 within coordinates of
Rr586600 938 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs6153686
MGI SNP Detail
Alliance Variant		 Chr3:143909608 Lmo4 Intron
Rr406521 within coordinates of
Rr586600 961 bp distal
 SNP A/G A G
rs387799596
MGI SNP Detail
Alliance Variant		 Chr3:143909762 Lmo4 Intron
Rr406521 within coordinates of
Rr586600 1115 bp distal
Rr586601 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G A G G G G G G
rs225547108
MGI SNP Detail
Alliance Variant		 Chr3:143909764 Lmo4 Intron
Rr406521 within coordinates of
Rr586600 1117 bp distal
Rr586601 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs250873414
MGI SNP Detail
Alliance Variant		 Chr3:143910218 Lmo4 Intron
Rr406521 within coordinates of
Rr586600 1571 bp distal
Rr586601 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs256307412
MGI SNP Detail
Alliance Variant		 Chr3:143910414 Cpgi13895 within coordinates of
Lmo4 Intron
Rr586600 1767 bp distal
Rr586601 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G G C C C C C G C C C C C C C G C C C C
rs225218142
MGI SNP Detail
Alliance Variant		 Chr3:143910533 Cpgi13895 within coordinates of
Lmo4 Intron
Rr586600 1886 bp distal
Rr586601 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T C T T T T T T T C T T T T
rs245380251
MGI SNP Detail
Alliance Variant		 Chr3:143910562 Cpgi13895 within coordinates of
Lmo4 Intron
Rr586600 1915 bp distal
Rr586601 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C T T T T T C T T T T T T T C T T T T
rs258688354
MGI SNP Detail
Alliance Variant		 Chr3:143910638 Cpgi13895 within coordinates of
Lmo4 mRNA-UTR
Rr586600 1991 bp distal
Rr586601 within coordinates of
Tssr35968 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C A C C C C C C C C C C C C C C C C C
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Showing SNP(s) 1 - 42 of 42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory
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