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Mouse SNP Summary
Symbol
Name
ID 		Rr586672
regulatory region 586672
MGI:8048804

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31129753
MGI SNP Detail
Alliance Variant		 Chr3:144257829 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1987 bp proximal
 SNP A/G G G G G G G G G G G G G G A G
rs214894358
MGI SNP Detail
Alliance Variant		 Chr3:144257840 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1976 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs31130645
MGI SNP Detail
Alliance Variant		 Chr3:144257853 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1963 bp proximal
 SNP C/T C C C C C C T C C C C C C C C
rs31130647
MGI SNP Detail
Alliance Variant		 Chr3:144257881 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1935 bp proximal
 SNP A/G A A A A A A G A A A A A A A A
rs31130649
MGI SNP Detail
Alliance Variant		 Chr3:144258007 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1809 bp proximal
 SNP A/G G G G G G G G G G G G G G A G
rs236543404
MGI SNP Detail
Alliance Variant		 Chr3:144258037 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1779 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs31130651
MGI SNP Detail
Alliance Variant		 Chr3:144258070 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1746 bp proximal
 SNP C/T T T T T T T C T T T T T T T T
rs579459416
MGI SNP Detail
Alliance Variant		 Chr3:144258088 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1728 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31130653
MGI SNP Detail
Alliance Variant		 Chr3:144258120 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1696 bp proximal
 SNP C/T T T T T T T C T T T C T T C T
rs238585815
MGI SNP Detail
Alliance Variant		 Chr3:144258135 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1681 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251282629
MGI SNP Detail
Alliance Variant		 Chr3:144258188 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1628 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs221462963
MGI SNP Detail
Alliance Variant		 Chr3:144258257 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1559 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A A A A A A A A A T A A A A
rs247551360
MGI SNP Detail
Alliance Variant		 Chr3:144258343 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1473 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31131625
MGI SNP Detail
Alliance Variant		 Chr3:144258370 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1446 bp proximal
 SNP A/T A A A A A A T A A A T A A T A
rs233859034
MGI SNP Detail
Alliance Variant		 Chr3:144258450 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1366 bp proximal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs243842972
MGI SNP Detail
Alliance Variant		 Chr3:144258453 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1363 bp proximal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs256686946
MGI SNP Detail
Alliance Variant		 Chr3:144258460 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1356 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs225520139
MGI SNP Detail
Alliance Variant		 Chr3:144258466 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1350 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245493610
MGI SNP Detail
Alliance Variant		 Chr3:144258468 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1348 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31131627
MGI SNP Detail
Alliance Variant		 Chr3:144258486 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1330 bp proximal
 SNP C/T C C C C C C T C C C C C C C C
rs31131629
MGI SNP Detail
Alliance Variant		 Chr3:144258490 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1326 bp proximal
 SNP A/G G G G G G G G G G G A G G G G
rs253634072
MGI SNP Detail
Alliance Variant		 Chr3:144258620 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1196 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219563351
MGI SNP Detail
Alliance Variant		 Chr3:144258627 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1189 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs235115780
MGI SNP Detail
Alliance Variant		 Chr3:144258704 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1112 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243309959
MGI SNP Detail
Alliance Variant		 Chr3:144258705 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1111 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213942388
MGI SNP Detail
Alliance Variant		 Chr3:144258798 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1018 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs232389348
MGI SNP Detail
Alliance Variant		 Chr3:144258833 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 983 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs251371109
MGI SNP Detail
Alliance Variant		 Chr3:144258897 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 919 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs31131631
MGI SNP Detail
Alliance Variant		 Chr3:144258953 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 863 bp proximal
 SNP C/T C C C C C C C C C C T C C C C
rs225149000
MGI SNP Detail
Alliance Variant		 Chr3:144258975 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 841 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242127864
MGI SNP Detail
Alliance Variant		 Chr3:144258980 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 836 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs260977355
MGI SNP Detail
Alliance Variant		 Chr3:144259051 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 765 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227090623
MGI SNP Detail
Alliance Variant		 Chr3:144259052 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 764 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31131633
MGI SNP Detail
Alliance Variant		 Chr3:144259141 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 675 bp proximal
 SNP C/T C C C C C C C C C C C C C T C
rs256767830
MGI SNP Detail
Alliance Variant		 Chr3:144259167 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 649 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219431685
MGI SNP Detail
Alliance Variant		 Chr3:144259197 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 619 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs31132325
MGI SNP Detail
Alliance Variant		 Chr3:144259205 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 611 bp proximal
 SNP C/G C C C C C C C C C C C C C G C
rs31132326
MGI SNP Detail
Alliance Variant		 Chr3:144259261 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 555 bp proximal
 SNP A/G G G G G G G A G G G G G G G G
rs232208001
MGI SNP Detail
Alliance Variant		 Chr3:144259289 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 527 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs31132328
MGI SNP Detail
Alliance Variant		 Chr3:144259318 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 498 bp proximal
 SNP C/T T T T T T T C T T T C T T T T
rs31132330
MGI SNP Detail
Alliance Variant		 Chr3:144259415 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 401 bp proximal
 SNP G/T G G G G G G T G G T G G G G
rs31132332
MGI SNP Detail
Alliance Variant		 Chr3:144259441 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 375 bp proximal
 SNP A/G G G G G G G A G G G G G G G G
rs31133334
MGI SNP Detail
Alliance Variant		 Chr3:144259473 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 343 bp proximal
 SNP C/T T T T T T T C T T T T T T T T
rs31133336
MGI SNP Detail
Alliance Variant		 Chr3:144259551 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 265 bp proximal
 SNP C/T T T T T T T C T T T T T T T T
rs31133338
MGI SNP Detail
Alliance Variant		 Chr3:144259615 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 201 bp proximal
 SNP C/T C C C C C C T C C C C C C C C
rs245530407
MGI SNP Detail
Alliance Variant		 Chr3:144259630 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 186 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs217373526
MGI SNP Detail
Alliance Variant		 Chr3:144259637 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 179 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G G G G G G G G A G G G G
rs31133340
MGI SNP Detail
Alliance Variant		 Chr3:144259695 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 121 bp proximal
 SNP A/G G G G G G G A G G G A G G G G
rs264249056
MGI SNP Detail
Alliance Variant		 Chr3:144259747 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 69 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220468334
MGI SNP Detail
Alliance Variant		 Chr3:144259753 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 63 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31133342
MGI SNP Detail
Alliance Variant		 Chr3:144259763 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 53 bp proximal
 SNP C/T C C C C C C C C C C T C C C C
rs230743487
MGI SNP Detail
Alliance Variant		 Chr3:144259860 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31134134
MGI SNP Detail
Alliance Variant		 Chr3:144259894 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 within coordinates of
 SNP C/T T T T T T T C T T T T T T T T
rs219553645
MGI SNP Detail
Alliance Variant		 Chr3:144259914 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239575524
MGI SNP Detail
Alliance Variant		 Chr3:144259934 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs583132370
MGI SNP Detail
Alliance Variant		 Chr3:144260001 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586417800
MGI SNP Detail
Alliance Variant		 Chr3:144260014 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 1 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31134136
MGI SNP Detail
Alliance Variant		 Chr3:144260033 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 20 bp distal
 SNP C/T T T T T T T C T T T C T T T T
rs224881140
MGI SNP Detail
Alliance Variant		 Chr3:144260042 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 29 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs31134138
MGI SNP Detail
Alliance Variant		 Chr3:144260116 Gm46829 within coordinates of
Hs2st1 Intron
Rr586672 103 bp distal
 SNP A/G A A A A A A A A A A G A A A A
rs31134140
MGI SNP Detail
Alliance Variant		 Chr3:144260199 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 186 bp distal
 SNP A/G G G G G G G A G G G G G G G G
rs31134141
MGI SNP Detail
Alliance Variant		 Chr3:144260259 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 246 bp distal
 SNP C/T C C C C C C T C C C T C C C C
rs227238098
MGI SNP Detail
Alliance Variant		 Chr3:144260287 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 274 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236360949
MGI SNP Detail
Alliance Variant		 Chr3:144260288 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 275 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs255769373
MGI SNP Detail
Alliance Variant		 Chr3:144260295 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 282 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs226479384
MGI SNP Detail
Alliance Variant		 Chr3:144260306 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 293 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31130344
MGI SNP Detail
Alliance Variant		 Chr3:144260312 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 299 bp distal
 SNP C/T T T T T T T C T T T T T T T T
rs217151587
MGI SNP Detail
Alliance Variant		 Chr3:144260333 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 320 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31130346
MGI SNP Detail
Alliance Variant		 Chr3:144260358 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 345 bp distal
 SNP C/G G G G G G G G G G C G
rs234414620
MGI SNP Detail
Alliance Variant		 Chr3:144260365 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 352 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs31130348
MGI SNP Detail
Alliance Variant		 Chr3:144260379 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 366 bp distal
 SNP A/C C C C C C C A C C C A C C C C
rs581046034
MGI SNP Detail
Alliance Variant		 Chr3:144260459 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 446 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583581419
MGI SNP Detail
Alliance Variant		 Chr3:144260460 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 447 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs212465483
MGI SNP Detail
Alliance Variant		 Chr3:144260488 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 475 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs230620272
MGI SNP Detail
Alliance Variant		 Chr3:144260495 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 482 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31130349
MGI SNP Detail
Alliance Variant		 Chr3:144260513 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 500 bp distal
 SNP A/G A A A A A A G A A G A A A A
rs213622566
MGI SNP Detail
Alliance Variant		 Chr3:144260531 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 518 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232839483
MGI SNP Detail
Alliance Variant		 Chr3:144260543 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 530 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T C T T T T T C T T T T T T T T T T T T T C T T T T
rs262822390
MGI SNP Detail
Alliance Variant		 Chr3:144260545 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 532 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs224820704
MGI SNP Detail
Alliance Variant		 Chr3:144260552 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 539 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs250015416
MGI SNP Detail
Alliance Variant		 Chr3:144260559 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 546 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C A C C C C C A C C C C C C C C C C C C C C C C C C
rs31130351
MGI SNP Detail
Alliance Variant		 Chr3:144260615 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 602 bp distal
 SNP A/G A A A A A A A A A G A A A A
rs260676368
MGI SNP Detail
Alliance Variant		 Chr3:144260625 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 612 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs31130353
MGI SNP Detail
Alliance Variant		 Chr3:144260682 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 669 bp distal
 SNP G/T T T T T T T G T T T T T T T
rs236347559
MGI SNP Detail
Alliance Variant		 Chr3:144260718 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 705 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs255109056
MGI SNP Detail
Alliance Variant		 Chr3:144260740 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 727 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs31131355
MGI SNP Detail
Alliance Variant		 Chr3:144260752 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 739 bp distal
 SNP C/T T T T T T T C T T T T T T T
rs239562441
MGI SNP Detail
Alliance Variant		 Chr3:144260790 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 777 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265816920
MGI SNP Detail
Alliance Variant		 Chr3:144260813 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 800 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs581429715
MGI SNP Detail
Alliance Variant		 Chr3:144260850 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 837 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs31131357
MGI SNP Detail
Alliance Variant		 Chr3:144260869 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 856 bp distal
 SNP C/T C C C C C C T C C C C C T C
rs31131359
MGI SNP Detail
Alliance Variant		 Chr3:144260876 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 863 bp distal
 SNP C/T T T T T T T T T T C T T T
rs31131361
MGI SNP Detail
Alliance Variant		 Chr3:144260893 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 880 bp distal
 SNP A/C C C C C C C A C C C C C A C
rs260473322
MGI SNP Detail
Alliance Variant		 Chr3:144260906 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 893 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212186542
MGI SNP Detail
Alliance Variant		 Chr3:144260907 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 894 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584790464
MGI SNP Detail
Alliance Variant		 Chr3:144260998 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 985 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31131363
MGI SNP Detail
Alliance Variant		 Chr3:144261018 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 1005 bp distal
 SNP A/C C C C C C C C C C A C C C C
rs31132215
MGI SNP Detail
Alliance Variant		 Chr3:144261030 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 1017 bp distal
 SNP C/T T T T T T T T T T T T T C T
rs214503485
MGI SNP Detail
Alliance Variant		 Chr3:144261054 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 1041 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A
rs31132217
MGI SNP Detail
Alliance Variant		 Chr3:144261068 Gm46829 within coordinates of
Hs2st1 Intron
Rr375851 within coordinates of
Rr586672 1055 bp distal
 SNP C/T C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 100 of 119
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory
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