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Mouse SNP Summary
Symbol
Name
ID
Rr586941
regulatory region 586941
MGI:8049073

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251476948
MGI SNP Detail
Alliance Variant
Chr3:145856713 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586939 within coordinates of
Rr586941 1993 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A
rs220020368
MGI SNP Detail
Alliance Variant
Chr3:145856772 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586939 within coordinates of
Rr586941 1934 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs244910437
MGI SNP Detail
Alliance Variant
Chr3:145856783 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586939 within coordinates of
Rr586941 1923 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581363201
MGI SNP Detail
Alliance Variant
Chr3:145856861 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586939 within coordinates of
Rr586941 1845 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs265664614
MGI SNP Detail
Alliance Variant
Chr3:145856909 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586939 within coordinates of
Rr586941 1797 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs585129985
MGI SNP Detail
Alliance Variant
Chr3:145856934 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586939 within coordinates of
Rr586941 1772 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs579416670
MGI SNP Detail
Alliance Variant
Chr3:145856967 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586939 within coordinates of
Rr586941 1739 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C C C C C C G C C C C C C C G C C C C
rs225407994
MGI SNP Detail
Alliance Variant
Chr3:145857029 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586939 within coordinates of
Rr586941 1677 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A G A A A A A A A G A A A A
rs250787314
MGI SNP Detail
Alliance Variant
Chr3:145857129 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 1577 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
rs253843679
MGI SNP Detail
Alliance Variant
Chr3:145857178 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 1528 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224341734
MGI SNP Detail
Alliance Variant
Chr3:145857206 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1500 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs243658652
MGI SNP Detail
Alliance Variant
Chr3:145857214 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1492 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256162149
MGI SNP Detail
Alliance Variant
Chr3:145857245 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1461 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs232028024
MGI SNP Detail
Alliance Variant
Chr3:145857335 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1371 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252439299
MGI SNP Detail
Alliance Variant
Chr3:145857342 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1364 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217408665
MGI SNP Detail
Alliance Variant
Chr3:145857362 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1344 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs239540216
MGI SNP Detail
Alliance Variant
Chr3:145857366 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1340 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248903059
MGI SNP Detail
Alliance Variant
Chr3:145857369 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1337 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs212403079
MGI SNP Detail
Alliance Variant
Chr3:145857376 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1330 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T T T T T C T T T C
rs231138710
MGI SNP Detail
Alliance Variant
Chr3:145857387 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1319 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs251603371
MGI SNP Detail
Alliance Variant
Chr3:145857399 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1307 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs223746367
MGI SNP Detail
Alliance Variant
Chr3:145857403 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1303 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A A A A A A A A T A A A A
rs240350759
MGI SNP Detail
Alliance Variant
Chr3:145857404 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1302 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs259162015
MGI SNP Detail
Alliance Variant
Chr3:145857437 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1269 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs225946816
MGI SNP Detail
Alliance Variant
Chr3:145857448 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1258 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248009089
MGI SNP Detail
Alliance Variant
Chr3:145857473 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1233 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs578640222
MGI SNP Detail
Alliance Variant
Chr3:145857475 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1231 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs582085349
MGI SNP Detail
Alliance Variant
Chr3:145857496 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1210 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs247876655
MGI SNP Detail
Alliance Variant
Chr3:145857578 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1128 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs585473580
MGI SNP Detail
Alliance Variant
Chr3:145857606 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1100 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218418573
MGI SNP Detail
Alliance Variant
Chr3:145857619 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1087 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs237538006
MGI SNP Detail
Alliance Variant
Chr3:145857638 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1068 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs256325717
MGI SNP Detail
Alliance Variant
Chr3:145857653 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1053 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231520272
MGI SNP Detail
Alliance Variant
Chr3:145857660 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1046 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs248812739
MGI SNP Detail
Alliance Variant
Chr3:145857679 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1027 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs263693025
MGI SNP Detail
Alliance Variant
Chr3:145857685 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1021 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs234304631
MGI SNP Detail
Alliance Variant
Chr3:145857691 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 1015 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs248837472
MGI SNP Detail
Alliance Variant
Chr3:145857729 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 977 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T C T T T C T T T T T T C T T T T T T T C T T T T
rs212145752
MGI SNP Detail
Alliance Variant
Chr3:145857765 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 941 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225084347
MGI SNP Detail
Alliance Variant
Chr3:145857804 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 902 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs245328599
MGI SNP Detail
Alliance Variant
Chr3:145857870 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 836 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs215669608
MGI SNP Detail
Alliance Variant
Chr3:145857878 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 828 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238121345
MGI SNP Detail
Alliance Variant
Chr3:145857950 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 756 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs263519000
MGI SNP Detail
Alliance Variant
Chr3:145857995 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 711 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs217617180
MGI SNP Detail
Alliance Variant
Chr3:145858043 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 663 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs234949087
MGI SNP Detail
Alliance Variant
Chr3:145858052 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 654 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs248002053
MGI SNP Detail
Alliance Variant
Chr3:145858071 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 635 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs218369239
MGI SNP Detail
Alliance Variant
Chr3:145858094 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr398113 within coordinates of
Rr586940 within coordinates of
Rr586941 612 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs237215059
MGI SNP Detail
Alliance Variant
Chr3:145858114 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr398113 within coordinates of
Rr586940 within coordinates of
Rr586941 592 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs257814319
MGI SNP Detail
Alliance Variant
Chr3:145858126 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr398113 within coordinates of
Rr586940 within coordinates of
Rr586941 580 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580115092
MGI SNP Detail
Alliance Variant
Chr3:145858182 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr398113 within coordinates of
Rr586940 within coordinates of
Rr586941 524 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs224191246
MGI SNP Detail
Alliance Variant
Chr3:145858190 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr398113 within coordinates of
Rr586940 within coordinates of
Rr586941 516 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs246186786
MGI SNP Detail
Alliance Variant
Chr3:145858238 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr398113 within coordinates of
Rr586940 within coordinates of
Rr586941 468 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A C A A A C A A A A A A C A A A A A A A A A A A A
rs46304152
MGI SNP Detail
Alliance Variant
Chr3:145858244 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr398113 within coordinates of
Rr586940 within coordinates of
Rr586941 462 bp proximal
SNP G G G G G
rs233784882
MGI SNP Detail
Alliance Variant
Chr3:145858260 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr398113 within coordinates of
Rr586940 within coordinates of
Rr586941 446 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242928043
MGI SNP Detail
Alliance Variant
Chr3:145858324 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr398113 within coordinates of
Rr586940 within coordinates of
Rr586941 382 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs256215807
MGI SNP Detail
Alliance Variant
Chr3:145858444 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 262 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G A G G G A G G G G G G A G G G G G G G A G G G G
rs225020506
MGI SNP Detail
Alliance Variant
Chr3:145858464 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 242 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs245079762
MGI SNP Detail
Alliance Variant
Chr3:145858475 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 231 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215143192
MGI SNP Detail
Alliance Variant
Chr3:145858495 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586940 within coordinates of
Rr586941 211 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs582693749
MGI SNP Detail
Alliance Variant
Chr3:145858659 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 47 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs586373731
MGI SNP Detail
Alliance Variant
Chr3:145858661 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 45 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs580610913
MGI SNP Detail
Alliance Variant
Chr3:145858689 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 17 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232583845
MGI SNP Detail
Alliance Variant
Chr3:145858717 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs253570448
MGI SNP Detail
Alliance Variant
Chr3:145858730 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs218433212
MGI SNP Detail
Alliance Variant
Chr3:145858771 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235454747
MGI SNP Detail
Alliance Variant
Chr3:145858778 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A G A A A G A A A A A A G A A A A A A A G A A A A
rs247946123
MGI SNP Detail
Alliance Variant
Chr3:145858780 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs212689138
MGI SNP Detail
Alliance Variant
Chr3:145858800 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs582871559
MGI SNP Detail
Alliance Variant
Chr3:145858837 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs231103530
MGI SNP Detail
Alliance Variant
Chr3:145858864 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs262273850
MGI SNP Detail
Alliance Variant
Chr3:145858873 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224150663
MGI SNP Detail
Alliance Variant
Chr3:145858955 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs241004843
MGI SNP Detail
Alliance Variant
Chr3:145858985 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A C A A A A A A C A A A A A A A C A A A A
rs260282964
MGI SNP Detail
Alliance Variant
Chr3:145858989 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223342400
MGI SNP Detail
Alliance Variant
Chr3:145859007 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 17 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A T A A A A A A T A A A A A A A T A A A A
rs237092160
MGI SNP Detail
Alliance Variant
Chr3:145859097 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 107 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256158150
MGI SNP Detail
Alliance Variant
Chr3:145859098 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 108 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs219029037
MGI SNP Detail
Alliance Variant
Chr3:145859101 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 111 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238892516
MGI SNP Detail
Alliance Variant
Chr3:145859122 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 132 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T G T T T T T T T G T T T T
rs579592483
MGI SNP Detail
Alliance Variant
Chr3:145859131 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 141 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs583235773
MGI SNP Detail
Alliance Variant
Chr3:145859134 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 144 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A A A A A A A A T A A A A A A A A A A A A
rs586571887
MGI SNP Detail
Alliance Variant
Chr3:145859141 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 151 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs265305430
MGI SNP Detail
Alliance Variant
Chr3:145859145 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 155 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs231758077
MGI SNP Detail
Alliance Variant
Chr3:145859173 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 183 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs258706894
MGI SNP Detail
Alliance Variant
Chr3:145859200 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 210 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs264226295
MGI SNP Detail
Alliance Variant
Chr3:145859269 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 279 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C C C C A C C C C C C C A C C C C
rs229451619
MGI SNP Detail
Alliance Variant
Chr3:145859274 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 284 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs242593340
MGI SNP Detail
Alliance Variant
Chr3:145859275 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 285 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A C A A A C A A A A C A C A A A A A A A C A A A C
rs212626702
MGI SNP Detail
Alliance Variant
Chr3:145859312 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 322 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A A A A A A A A T A A A A A A A T A A A A
rs231223488
MGI SNP Detail
Alliance Variant
Chr3:145859332 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 342 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G A G G G G
rs251338022
MGI SNP Detail
Alliance Variant
Chr3:145859337 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 347 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs215754706
MGI SNP Detail
Alliance Variant
Chr3:145859347 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 357 bp distal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs238390020
MGI SNP Detail
Alliance Variant
Chr3:145859446 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 456 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263718782
MGI SNP Detail
Alliance Variant
Chr3:145859469 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 479 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs223454867
MGI SNP Detail
Alliance Variant
Chr3:145859473 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 483 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229783316
MGI SNP Detail
Alliance Variant
Chr3:145859478 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 488 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250307149
MGI SNP Detail
Alliance Variant
Chr3:145859637 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 647 bp distal
Rr586942 within coordinates of
Tssr36031 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G A G G G G
rs246153988
MGI SNP Detail
Alliance Variant
Chr3:145859763 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 773 bp distal
Rr586942 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
rs262876774
MGI SNP Detail
Alliance Variant
Chr3:145859789 Mcoln2 Intron
Mcoln2 Noncoding-Transcript-Variant
Rr586941 799 bp distal
Rr586942 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 100 of 141

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory