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Mouse SNP Summary
Symbol
Name
ID 		Rr587628
regulatory region 587628
MGI:8049760

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255473780
MGI SNP Detail
Alliance Variant		 Chr3:152632553 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1989 bp proximal
St6galnac5 Intron
 SNP C C C
rs244173217
MGI SNP Detail
Alliance Variant		 Chr3:152632563 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1979 bp proximal
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213306707
MGI SNP Detail
Alliance Variant		 Chr3:152632577 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1965 bp proximal
St6galnac5 Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs214603908
MGI SNP Detail
Alliance Variant		 Chr3:152632597 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1945 bp proximal
St6galnac5 Intron
 SNP G G G
rs252952686
MGI SNP Detail
Alliance Variant		 Chr3:152632610 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1932 bp proximal
St6galnac5 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs234163386
MGI SNP Detail
Alliance Variant		 Chr3:152632626 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1916 bp proximal
St6galnac5 Intron
 SNP T T T
rs238472188
MGI SNP Detail
Alliance Variant		 Chr3:152632642 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1900 bp proximal
St6galnac5 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262789114
MGI SNP Detail
Alliance Variant		 Chr3:152632650 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1892 bp proximal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252632229
MGI SNP Detail
Alliance Variant		 Chr3:152632668 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1874 bp proximal
St6galnac5 Intron
 SNP A A A
rs238772419
MGI SNP Detail
Alliance Variant		 Chr3:152632725 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1817 bp proximal
St6galnac5 Intron
 SNP A/C C C C A C A A A A A A A A A A A A A A C C C A C A A A A C C C C A A A A A A A A A A A A A A A C C C A A C
rs47232404
MGI SNP Detail
Alliance Variant		 Chr3:152632774 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1768 bp proximal
St6galnac5 Intron
 SNP C/T T T C C
rs218143741
MGI SNP Detail
Alliance Variant		 Chr3:152632775 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1767 bp proximal
St6galnac5 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237237371
MGI SNP Detail
Alliance Variant		 Chr3:152632796 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1746 bp proximal
St6galnac5 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264473512
MGI SNP Detail
Alliance Variant		 Chr3:152632820 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1722 bp proximal
St6galnac5 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs242009584
MGI SNP Detail
Alliance Variant		 Chr3:152632821 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1721 bp proximal
St6galnac5 Intron
 SNP C C C
rs253316543
MGI SNP Detail
Alliance Variant		 Chr3:152632823 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1719 bp proximal
St6galnac5 Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs265561545
MGI SNP Detail
Alliance Variant		 Chr3:152632824 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1718 bp proximal
St6galnac5 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs226360446
MGI SNP Detail
Alliance Variant		 Chr3:152632837 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1705 bp proximal
St6galnac5 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs31056209
MGI SNP Detail
Alliance Variant		 Chr3:152632885 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1657 bp proximal
St6galnac5 Intron
 SNP C/T T T C C C T T
rs31173430
MGI SNP Detail
Alliance Variant		 Chr3:152632903 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1639 bp proximal
St6galnac5 Intron
 SNP A/G G G A A A G G
rs31385520
MGI SNP Detail
Alliance Variant		 Chr3:152632912 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1630 bp proximal
St6galnac5 Intron
 SNP C/T C C T T T C C
rs247104124
MGI SNP Detail
Alliance Variant		 Chr3:152632993 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1549 bp proximal
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217499149
MGI SNP Detail
Alliance Variant		 Chr3:152633015 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1527 bp proximal
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs30016960
MGI SNP Detail
Alliance Variant		 Chr3:152633092 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1450 bp proximal
St6galnac5 Intron
 SNP A/G G G A A A G G
rs258415386
MGI SNP Detail
Alliance Variant		 Chr3:152633100 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1442 bp proximal
St6galnac5 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30453108
MGI SNP Detail
Alliance Variant		 Chr3:152633138 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1404 bp proximal
St6galnac5 Intron
 SNP C/T T T C C C T T
rs231496302
MGI SNP Detail
Alliance Variant		 Chr3:152633255 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1287 bp proximal
St6galnac5 Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs250321690
MGI SNP Detail
Alliance Variant		 Chr3:152633507 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1035 bp proximal
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G
rs218112661
MGI SNP Detail
Alliance Variant		 Chr3:152633528 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 1014 bp proximal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs242713464
MGI SNP Detail
Alliance Variant		 Chr3:152633630 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 912 bp proximal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31391083
MGI SNP Detail
Alliance Variant		 Chr3:152633643 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 899 bp proximal
St6galnac5 Intron
 SNP C/T T C C C T T
rs225813911
MGI SNP Detail
Alliance Variant		 Chr3:152633831 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 711 bp proximal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249257580
MGI SNP Detail
Alliance Variant		 Chr3:152633849 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 693 bp proximal
St6galnac5 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs30843797
MGI SNP Detail
Alliance Variant		 Chr3:152633853 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 689 bp proximal
St6galnac5 Intron
 SNP A/G G G A A G G
rs226266207
MGI SNP Detail
Alliance Variant		 Chr3:152633870 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 672 bp proximal
St6galnac5 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs237825782
MGI SNP Detail
Alliance Variant		 Chr3:152633903 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 639 bp proximal
St6galnac5 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs254892985
MGI SNP Detail
Alliance Variant		 Chr3:152633922 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 620 bp proximal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223757701
MGI SNP Detail
Alliance Variant		 Chr3:152633933 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 609 bp proximal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255058787
MGI SNP Detail
Alliance Variant		 Chr3:152633951 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 591 bp proximal
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218621578
MGI SNP Detail
Alliance Variant		 Chr3:152633977 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 565 bp proximal
St6galnac5 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs232084400
MGI SNP Detail
Alliance Variant		 Chr3:152633999 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 543 bp proximal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
rs256843732
MGI SNP Detail
Alliance Variant		 Chr3:152634059 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587628 483 bp proximal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
rs214150601
MGI SNP Detail
Alliance Variant		 Chr3:152634160 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587627 within coordinates of
Rr587628 382 bp proximal
St6galnac5 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231445866
MGI SNP Detail
Alliance Variant		 Chr3:152634222 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587627 within coordinates of
Rr587628 320 bp proximal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250230657
MGI SNP Detail
Alliance Variant		 Chr3:152634230 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587627 within coordinates of
Rr587628 312 bp proximal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30399309
MGI SNP Detail
Alliance Variant		 Chr3:152634333 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587627 within coordinates of
Rr587628 209 bp proximal
St6galnac5 Intron
 SNP A/G A A A G G A A
rs236298415
MGI SNP Detail
Alliance Variant		 Chr3:152634334 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587627 within coordinates of
Rr587628 208 bp proximal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46779252
MGI SNP Detail
Alliance Variant		 Chr3:152634457 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587627 within coordinates of
Rr587628 85 bp proximal
St6galnac5 Intron
 SNP A/G A A G A A
rs225180596
MGI SNP Detail
Alliance Variant		 Chr3:152634483 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587627 within coordinates of
Rr587628 59 bp proximal
St6galnac5 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246457131
MGI SNP Detail
Alliance Variant		 Chr3:152634513 Gm16213 within coordinates of
Gm46830 within coordinates of
Rr587627 within coordinates of
Rr587628 29 bp proximal
St6galnac5 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262952335
MGI SNP Detail
Alliance Variant		 Chr3:152634533 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587627 within coordinates of
Rr587628 9 bp proximal
St6galnac5 Intron
Tssr32427 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
rs220165063
MGI SNP Detail
Alliance Variant		 Chr3:152634591 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs237735908
MGI SNP Detail
Alliance Variant		 Chr3:152634599 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C C C C C C C T C C C C C C C T C C C T
rs30841789
MGI SNP Detail
Alliance Variant		 Chr3:152634609 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/T A A T A A
rs223715273
MGI SNP Detail
Alliance Variant		 Chr3:152634621 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
rs251797759
MGI SNP Detail
Alliance Variant		 Chr3:152634649 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G A G G G G
rs47176551
MGI SNP Detail
Alliance Variant		 Chr3:152634691 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A A A A A
rs233572104
MGI SNP Detail
Alliance Variant		 Chr3:152634707 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C T
rs251932706
MGI SNP Detail
Alliance Variant		 Chr3:152634733 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214066846
MGI SNP Detail
Alliance Variant		 Chr3:152634777 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C C C C C C C C G C C C C C C C G C C C C
rs225467327
MGI SNP Detail
Alliance Variant		 Chr3:152634778 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A G
rs245028820
MGI SNP Detail
Alliance Variant		 Chr3:152634941 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP T T T
rs211886334
MGI SNP Detail
Alliance Variant		 Chr3:152635083 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs214472361
MGI SNP Detail
Alliance Variant		 Chr3:152635095 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A A A
rs227494899
MGI SNP Detail
Alliance Variant		 Chr3:152635097 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP G G G
rs216608258
MGI SNP Detail
Alliance Variant		 Chr3:152635202 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A A A A A A A G A A A A A A A G A A A A
rs239966159
MGI SNP Detail
Alliance Variant		 Chr3:152635223 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs247423844
MGI SNP Detail
Alliance Variant		 Chr3:152635227 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP G G G
rs220079208
MGI SNP Detail
Alliance Variant		 Chr3:152635235 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs231520699
MGI SNP Detail
Alliance Variant		 Chr3:152635302 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G T G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs249068561
MGI SNP Detail
Alliance Variant		 Chr3:152635311 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C C C A C C C C C C C C C C C C
rs218115581
MGI SNP Detail
Alliance Variant		 Chr3:152635313 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G G T G G G G G G G G G G G G
rs215772074
MGI SNP Detail
Alliance Variant		 Chr3:152635324 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP T T T
rs266003228
MGI SNP Detail
Alliance Variant		 Chr3:152635333 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs225265645
MGI SNP Detail
Alliance Variant		 Chr3:152635335 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A C A C A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248370621
MGI SNP Detail
Alliance Variant		 Chr3:152635421 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C T C C C C C C C C C C C C
rs586979134
MGI SNP Detail
Alliance Variant		 Chr3:152635428 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C T C C C C C C C C C C C C
rs580635635
MGI SNP Detail
Alliance Variant		 Chr3:152635430 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258731118
MGI SNP Detail
Alliance Variant		 Chr3:152635438 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs225427938
MGI SNP Detail
Alliance Variant		 Chr3:152635440 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/C A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A
rs243976237
MGI SNP Detail
Alliance Variant		 Chr3:152635464 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C
rs584377176
MGI SNP Detail
Alliance Variant		 Chr3:152635470 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G
rs587374475
MGI SNP Detail
Alliance Variant		 Chr3:152635478 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C T C C C C C C C C C C C
rs581797351
MGI SNP Detail
Alliance Variant		 Chr3:152635479 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C T C C C C C C C C C C C
rs255779167
MGI SNP Detail
Alliance Variant		 Chr3:152635504 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C
rs234736369
MGI SNP Detail
Alliance Variant		 Chr3:152635523 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C C C C C C C T C C C C C C T C C C C
rs253783515
MGI SNP Detail
Alliance Variant		 Chr3:152635541 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs216991166
MGI SNP Detail
Alliance Variant		 Chr3:152635554 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs237790162
MGI SNP Detail
Alliance Variant		 Chr3:152635565 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs244538406
MGI SNP Detail
Alliance Variant		 Chr3:152635566 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213668207
MGI SNP Detail
Alliance Variant		 Chr3:152635611 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs231443059
MGI SNP Detail
Alliance Variant		 Chr3:152635654 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A A A A A A G A A A A A A A G A A A A
rs248992731
MGI SNP Detail
Alliance Variant		 Chr3:152635664 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs220592983
MGI SNP Detail
Alliance Variant		 Chr3:152635700 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 within coordinates of
St6galnac5 Intron
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243238319
MGI SNP Detail
Alliance Variant		 Chr3:152635757 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 15 bp distal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs585250931
MGI SNP Detail
Alliance Variant		 Chr3:152635829 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 87 bp distal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
rs239391118
MGI SNP Detail
Alliance Variant		 Chr3:152635841 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 99 bp distal
St6galnac5 Intron
 SNP C C C
rs225513463
MGI SNP Detail
Alliance Variant		 Chr3:152635852 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 110 bp distal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
rs245717981
MGI SNP Detail
Alliance Variant		 Chr3:152635861 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 119 bp distal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs258645650
MGI SNP Detail
Alliance Variant		 Chr3:152635877 Gm16213 within coordinates of
Gm46830 within coordinates of
Gm66995 within coordinates of
Rr587628 135 bp distal
St6galnac5 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 100 of 146
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory