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Mouse SNP Summary
Symbol
Name
ID 		Rr588089
regulatory region 588089
MGI:8050221

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261399847
MGI SNP Detail
Alliance Variant		 Chr3:157740285 Gm43362 within coordinates of
Rr588089 1981 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs227574714
MGI SNP Detail
Alliance Variant		 Chr3:157740311 Gm43362 within coordinates of
Rr588089 1955 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs247297971
MGI SNP Detail
Alliance Variant		 Chr3:157740367 Gm43362 within coordinates of
Rr588089 1899 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A T A T A
rs213899964
MGI SNP Detail
Alliance Variant		 Chr3:157740392 Gm43362 within coordinates of
Rr588089 1874 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs231291121
MGI SNP Detail
Alliance Variant		 Chr3:157740436 Gm43362 within coordinates of
Rr588089 1830 bp proximal
Srsf11 Intron
Srsf11 mRNA-UTR
Srsf11 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249433202
MGI SNP Detail
Alliance Variant		 Chr3:157740491 Gm43362 within coordinates of
Rr588089 1775 bp proximal
Srsf11 Intron
Srsf11 mRNA-UTR
Srsf11 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs213716199
MGI SNP Detail
Alliance Variant		 Chr3:157740493 Gm43362 within coordinates of
Rr588089 1773 bp proximal
Srsf11 Intron
Srsf11 mRNA-UTR
Srsf11 Noncoding-Transcript-Variant
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs239726212
MGI SNP Detail
Alliance Variant		 Chr3:157740521 Gm43362 within coordinates of
Rr588089 1745 bp proximal
Srsf11 Intron
Srsf11 mRNA-UTR
Srsf11 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253474707
MGI SNP Detail
Alliance Variant		 Chr3:157740531 Gm43362 within coordinates of
Rr588089 1735 bp proximal
Srsf11 Intron
Srsf11 mRNA-UTR
Srsf11 Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs217155263
MGI SNP Detail
Alliance Variant		 Chr3:157740639 Gm43362 within coordinates of
Rr588089 1627 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30915590
MGI SNP Detail
Alliance Variant		 Chr3:157740658 Gm43362 within coordinates of
Rr588089 1608 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/T T T T T T T C T T T T T T C
rs251771341
MGI SNP Detail
Alliance Variant		 Chr3:157740737 Gm43362 within coordinates of
Rr588089 1529 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222228624
MGI SNP Detail
Alliance Variant		 Chr3:157740769 Gm43362 within coordinates of
Rr588089 1497 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C T C
rs246506745
MGI SNP Detail
Alliance Variant		 Chr3:157740814 Gm43362 within coordinates of
Rr588089 1452 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255430942
MGI SNP Detail
Alliance Variant		 Chr3:157740824 Gm43362 within coordinates of
Rr588089 1442 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221109391
MGI SNP Detail
Alliance Variant		 Chr3:157740845 Gm43362 within coordinates of
Rr588089 1421 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241870965
MGI SNP Detail
Alliance Variant		 Chr3:157740885 Gm43362 within coordinates of
Rr588089 1381 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261203484
MGI SNP Detail
Alliance Variant		 Chr3:157740886 Gm43362 within coordinates of
Rr588089 1380 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227506186
MGI SNP Detail
Alliance Variant		 Chr3:157740887 Gm43362 within coordinates of
Rr588089 1379 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241399784
MGI SNP Detail
Alliance Variant		 Chr3:157741071 Gm43362 within coordinates of
Rr588089 1195 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265122773
MGI SNP Detail
Alliance Variant		 Chr3:157741174 Gm43362 within coordinates of
Rr588089 1092 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230930772
MGI SNP Detail
Alliance Variant		 Chr3:157741289 Gm43362 within coordinates of
Rr588089 977 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/G/T G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G C G G G G G C G C G
rs252746105
MGI SNP Detail
Alliance Variant		 Chr3:157741300 Gm43362 within coordinates of
Rr588089 966 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs262149371
MGI SNP Detail
Alliance Variant		 Chr3:157741448 Gm43362 within coordinates of
Rr588089 818 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228873564
MGI SNP Detail
Alliance Variant		 Chr3:157741454 Gm43362 within coordinates of
Rr588089 812 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30915587
MGI SNP Detail
Alliance Variant		 Chr3:157741476 Gm43362 within coordinates of
Rr588089 790 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/G G G G G G G A G G G G G G G G
rs215424487
MGI SNP Detail
Alliance Variant		 Chr3:157741781 Gm43362 within coordinates of
Rr588089 485 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs30915584
MGI SNP Detail
Alliance Variant		 Chr3:157741866 Cpgi13980 within coordinates of
Gm43362 within coordinates of
Rr588089 400 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G T G
rs233829000
MGI SNP Detail
Alliance Variant		 Chr3:157741874 Cpgi13980 within coordinates of
Gm43362 within coordinates of
Rr588089 392 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252869805
MGI SNP Detail
Alliance Variant		 Chr3:157741928 Cpgi13980 within coordinates of
Gm43362 within coordinates of
Rr588089 338 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213935330
MGI SNP Detail
Alliance Variant		 Chr3:157742080 Cpgi13980 within coordinates of
Rr398144 within coordinates of
Rr588089 186 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs236656622
MGI SNP Detail
Alliance Variant		 Chr3:157742081 Cpgi13980 within coordinates of
Rr398144 within coordinates of
Rr588089 185 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs260653843
MGI SNP Detail
Alliance Variant		 Chr3:157742084 Cpgi13980 within coordinates of
Rr398144 within coordinates of
Rr588089 182 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C
rs221451910
MGI SNP Detail
Alliance Variant		 Chr3:157742090 Cpgi13980 within coordinates of
Rr398144 within coordinates of
Rr588089 176 bp proximal
Srsf11 Intron
Srsf11 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235540088
MGI SNP Detail
Alliance Variant		 Chr3:157742181 Cpgi13980 within coordinates of
Rr398144 within coordinates of
Rr588089 85 bp proximal
Srsf11 Coding-NonSynonymous
Srsf11 mRNA-UTR
Srsf11 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30914581
MGI SNP Detail
Alliance Variant		 Chr3:157742389 Cpgi13980 within coordinates of
Lrrc40 Coding-NonSynonymous
Lrrc40 mRNA-UTR
Rr588089 80 bp distal
 SNP C/G G G G G G G G G G G C G G G G
rs255268878
MGI SNP Detail
Alliance Variant		 Chr3:157742525 Cpgi13980 within coordinates of
Lrrc40 Intron
Rr588089 216 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220880663
MGI SNP Detail
Alliance Variant		 Chr3:157742655 Cpgi13980 within coordinates of
Lrrc40 Intron
Rr588089 346 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs241163739
MGI SNP Detail
Alliance Variant		 Chr3:157742661 Cpgi13980 within coordinates of
Lrrc40 Intron
Rr588089 352 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs30914578
MGI SNP Detail
Alliance Variant		 Chr3:157742751 Lrrc40 Intron
Rr588089 442 bp distal
 SNP C/T T T T T T T C T T T T T T C
rs223390148
MGI SNP Detail
Alliance Variant		 Chr3:157742777 Lrrc40 Intron
Rr588089 468 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241272966
MGI SNP Detail
Alliance Variant		 Chr3:157742873 Lrrc40 Intron
Rr588089 564 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs264888261
MGI SNP Detail
Alliance Variant		 Chr3:157742930 Lrrc40 Intron
Rr588089 621 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs247761821
MGI SNP Detail
Alliance Variant		 Chr3:157743180 Lrrc40 Intron
Rr588089 871 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs257655139
MGI SNP Detail
Alliance Variant		 Chr3:157743210 Lrrc40 Intron
Rr588089 901 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs227776909
MGI SNP Detail
Alliance Variant		 Chr3:157743373 Lrrc40 Intron
Rr588089 1064 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs255666319
MGI SNP Detail
Alliance Variant		 Chr3:157743431 Lrrc40 Intron
Rr588089 1122 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T T T T T T T T T T T G T T T T G G T G T
rs213473308
MGI SNP Detail
Alliance Variant		 Chr3:157743457 Lrrc40 Intron
Rr588089 1148 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582335187
MGI SNP Detail
Alliance Variant		 Chr3:157743611 Lrrc40 Intron
Rr588089 1302 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238861090
MGI SNP Detail
Alliance Variant		 Chr3:157743629 Lrrc40 Intron
Rr588089 1320 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G T G T T G G G G T G G G G G G G G G G G G G G G T G G G G T G T G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248840218
MGI SNP Detail
Alliance Variant		 Chr3:157743714 Lrrc40 Intron
Rr588089 1405 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212517994
MGI SNP Detail
Alliance Variant		 Chr3:157743774 Lrrc40 Intron
Rr588089 1465 bp distal
 SNP G/T T T G G G G G T G G G G G G G G G G G G G G G G G G G T G G T G G G G G G G G T G G G G G G G G G G G G
rs235280758
MGI SNP Detail
Alliance Variant		 Chr3:157743824 Lrrc40 Intron
Rr588089 1515 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G A G
rs255204475
MGI SNP Detail
Alliance Variant		 Chr3:157743855 Lrrc40 Intron
Rr588089 1546 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs221003602
MGI SNP Detail
Alliance Variant		 Chr3:157744008 Lrrc40 Intron
Rr588089 1699 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs234650739
MGI SNP Detail
Alliance Variant		 Chr3:157744057 Lrrc40 Intron
Rr588089 1748 bp distal
 SNP C/T C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C
rs580151357
MGI SNP Detail
Alliance Variant		 Chr3:157744063 Lrrc40 Intron
Rr588089 1754 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs30914575
MGI SNP Detail
Alliance Variant		 Chr3:157744162 Lrrc40 Intron
Rr588089 1853 bp distal
 SNP A/G A A A A A A G A A A A A A G
rs223609348
MGI SNP Detail
Alliance Variant		 Chr3:157744181 Lrrc40 Intron
Rr588089 1872 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
<< first < prev1 next > last >>
Showing SNP(s) 1 - 59 of 59
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory