About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Rr588547
regulatory region 588547
MGI:8050679

<< first < prev1 next > last >>
Showing SNP(s) 1 - 75 of 75

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27676321
MGI SNP Detail
Alliance Variant
Chr4:8603471 Rab2a Intron
Rr588547 1973 bp proximal
SNP A/G A A A A A G A A A A A A G A
rs229767893
MGI SNP Detail
Alliance Variant
Chr4:8603492 Rab2a Intron
Rr588547 1952 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs243890148
MGI SNP Detail
Alliance Variant
Chr4:8603500 Rab2a Intron
Rr588547 1944 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs32918120
MGI SNP Detail
Alliance Variant
Chr4:8603506 Rab2a Intron
Rr588547 1938 bp proximal
SNP C/T T T C T T
rs27676320
MGI SNP Detail
Alliance Variant
Chr4:8603530 Rab2a Intron
Rr588547 1914 bp proximal
SNP G/T T T T T T T T T T T T T G
rs224517469
MGI SNP Detail
Alliance Variant
Chr4:8603577 Rab2a Intron
Rr588547 1867 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C C C C A C C C C C C C C C C C C
rs32098247
MGI SNP Detail
Alliance Variant
Chr4:8603595 Rab2a Intron
Rr588547 1849 bp proximal
SNP A/C C C A A C C A
rs32388145
MGI SNP Detail
Alliance Variant
Chr4:8603608 Rab2a Intron
Rr588547 1836 bp proximal
SNP A/G A A A G A A G
rs229573318
MGI SNP Detail
Alliance Variant
Chr4:8603650 Rab2a Intron
Rr588547 1794 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs257681036
MGI SNP Detail
Alliance Variant
Chr4:8603683 Rab2a Intron
Rr588547 1761 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs216806397
MGI SNP Detail
Alliance Variant
Chr4:8603685 Rab2a Intron
Rr588547 1759 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs238137252
MGI SNP Detail
Alliance Variant
Chr4:8603709 Rab2a Intron
Rr588547 1735 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs258064653
MGI SNP Detail
Alliance Variant
Chr4:8603792 Rab2a Intron
Rr588547 1652 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212249817
MGI SNP Detail
Alliance Variant
Chr4:8603812 Rab2a Intron
Rr588547 1632 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230634886
MGI SNP Detail
Alliance Variant
Chr4:8603833 Rab2a Intron
Rr588547 1611 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs252546358
MGI SNP Detail
Alliance Variant
Chr4:8603840 Rab2a Intron
Rr588547 1604 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs222514746
MGI SNP Detail
Alliance Variant
Chr4:8604036 Rab2a Intron
Rr588547 1408 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs245237167
MGI SNP Detail
Alliance Variant
Chr4:8604126 Rab2a Intron
Rr588547 1318 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263324793
MGI SNP Detail
Alliance Variant
Chr4:8604129 Rab2a Intron
Rr588547 1315 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs222290916
MGI SNP Detail
Alliance Variant
Chr4:8604203 Rab2a Intron
Rr588547 1241 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs246493725
MGI SNP Detail
Alliance Variant
Chr4:8604209 Rab2a Intron
Rr588547 1235 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs255863175
MGI SNP Detail
Alliance Variant
Chr4:8604248 Rab2a Intron
Rr588547 1196 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G G G G G G G G T G G G G G G G T G G G G
rs224765675
MGI SNP Detail
Alliance Variant
Chr4:8604249 Rab2a Intron
Rr588547 1195 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241763511
MGI SNP Detail
Alliance Variant
Chr4:8604298 Rab2a Intron
Rr588547 1146 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260868606
MGI SNP Detail
Alliance Variant
Chr4:8604352 Rab2a Intron
Rr588547 1092 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27676319
MGI SNP Detail
Alliance Variant
Chr4:8604370 Rab2a Intron
Rab2a Splice-Site
Rr588547 1074 bp proximal
SNP C/T T T T T C T T T T T T
rs252726004
MGI SNP Detail
Alliance Variant
Chr4:8604490 Rab2a Intron
Rr588547 954 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217582146
MGI SNP Detail
Alliance Variant
Chr4:8604583 Rab2a Intron
Rr588547 861 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs230111259
MGI SNP Detail
Alliance Variant
Chr4:8604719 Rab2a Intron
Rr588547 725 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs256364034
MGI SNP Detail
Alliance Variant
Chr4:8604760 Rab2a Intron
Rr588547 684 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212100256
MGI SNP Detail
Alliance Variant
Chr4:8604922 Rab2a Intron
Rr588547 522 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs230884721
MGI SNP Detail
Alliance Variant
Chr4:8604949 Rab2a Intron
Rr588547 495 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs252732329
MGI SNP Detail
Alliance Variant
Chr4:8604971 Rab2a Intron
Rr588547 473 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A A A A A A A A C A A A A A A A A A A A A
rs27676318
MGI SNP Detail
Alliance Variant
Chr4:8605043 Rab2a Intron
Rr588547 401 bp proximal
SNP A/G G G A G G G A G G G A G G
rs239801579
MGI SNP Detail
Alliance Variant
Chr4:8605140 Rab2a Intron
Rr588547 304 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C C C C A C C C C C C C C C C C C
rs47677529
MGI SNP Detail
Alliance Variant
Chr4:8605184 Rab2a Intron
Rr588547 260 bp proximal
SNP A/G G A G G A
rs222080283
MGI SNP Detail
Alliance Variant
Chr4:8605249 Rab2a Intron
Rr588547 195 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs27676317
MGI SNP Detail
Alliance Variant
Chr4:8605263 Rab2a Intron
Rr588547 181 bp proximal
SNP C/T T T T T T T T T T T T T C T
rs33003796
MGI SNP Detail
Alliance Variant
Chr4:8605331 Rab2a Intron
Rr588547 113 bp proximal
SNP A/G G A A G
rs218550155
MGI SNP Detail
Alliance Variant
Chr4:8605361 Rab2a Intron
Rr588547 83 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27676316
MGI SNP Detail
Alliance Variant
Chr4:8605381 Rab2a Intron
Rr588547 63 bp proximal
SNP C/T T T T T T C T T T T T T T
rs261073839
MGI SNP Detail
Alliance Variant
Chr4:8605585 Rab2a Intron
Rr588547 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227073445
MGI SNP Detail
Alliance Variant
Chr4:8605664 Rab2a Intron
Rr588547 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs248252756
MGI SNP Detail
Alliance Variant
Chr4:8605669 Rab2a Intron
Rr588547 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263843592
MGI SNP Detail
Alliance Variant
Chr4:8605749 Rab2a Intron
Rr588547 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs230672283
MGI SNP Detail
Alliance Variant
Chr4:8605755 Rab2a Intron
Rr588547 within coordinates of
SNP A/C/G A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A C A A A A A A A G A A A A
rs244858014
MGI SNP Detail
Alliance Variant
Chr4:8605785 Rab2a Intron
Rr588547 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253976018
MGI SNP Detail
Alliance Variant
Chr4:8605950 Rab2a Intron
Rr588547 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs224446509
MGI SNP Detail
Alliance Variant
Chr4:8606080 Rab2a Intron
Rr588547 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246886896
MGI SNP Detail
Alliance Variant
Chr4:8606148 Rab2a Intron
Rr588547 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27676315
MGI SNP Detail
Alliance Variant
Chr4:8606149 Rab2a Intron
Rr588547 within coordinates of
SNP A/C C C A C C C C C C C C C A C C C
rs237799809
MGI SNP Detail
Alliance Variant
Chr4:8606333 Rab2a Intron
Rr588547 182 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T A A T T T T T T T T T T T T T T T T T T T T T T T
rs32062102
MGI SNP Detail
Alliance Variant
Chr4:8606334 Rab2a Intron
Rr588547 183 bp distal
SNP A/T T A T
rs213575120
MGI SNP Detail
Alliance Variant
Chr4:8606353 Rab2a Intron
Rr588547 202 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs238989268
MGI SNP Detail
Alliance Variant
Chr4:8606517 Rab2a mRNA-UTR
Rr588547 366 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs27676314
MGI SNP Detail
Alliance Variant
Chr4:8606521 Rab2a mRNA-UTR
Rr588547 370 bp distal
SNP A/G A A A A A G A A A A A A A A
rs13459344
MGI SNP Detail
Alliance Variant
Chr4:8606540 Rab2a mRNA-UTR
Rr588547 389 bp distal
SNP A/G G G G G G G G G G G G G A G
rs4224358
MGI SNP Detail
Alliance Variant
Chr4:8607347 Rab2a mRNA-UTR
Rr588547 1196 bp distal
SNP C/T T T T T T T T C
rs4224357
MGI SNP Detail
Alliance Variant
Chr4:8607356 Rab2a mRNA-UTR
Rr588547 1205 bp distal
SNP A/C C C C C C C C C C A A C A A A C C C C C C C C C C A C C C C C C C C A A C C C C C A C C C C C
rs4224356
MGI SNP Detail
Alliance Variant
Chr4:8607459 Rab2a mRNA-UTR
Rr588547 1308 bp distal
SNP G/T T T T T T T T G T T T T T T T T T
rs4224355
MGI SNP Detail
Alliance Variant
Chr4:8607502 Rab2a mRNA-UTR
Rr588547 1351 bp distal
SNP C/T T T T T T T T C
rs246024287
MGI SNP Detail
Alliance Variant
Chr4:8607555 Rab2a mRNA-UTR
Rr588547 1404 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs4224354
MGI SNP Detail
Alliance Variant
Chr4:8607734 Rab2a mRNA-UTR
Rr588547 1583 bp distal
SNP A/G G G G G G G G A
rs4224353
MGI SNP Detail
Alliance Variant
Chr4:8607752 Rab2a mRNA-UTR
Rr588547 1601 bp distal
SNP C/T C C C C C C C T
rs238790234
MGI SNP Detail
Alliance Variant
Chr4:8607754 Rab2a mRNA-UTR
Rr588547 1603 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254233032
MGI SNP Detail
Chr4:8607779 Rr588547 1628 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27676313
MGI SNP Detail
Chr4:8607802 Rr588547 1651 bp distal
SNP G/T G G G G G G G G G G G G T G
rs246766919
MGI SNP Detail
Chr4:8607830 Rr588547 1679 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264443673
MGI SNP Detail
Chr4:8607836 Rr588547 1685 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs232361489
MGI SNP Detail
Chr4:8607871 Rr588547 1720 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A A A A A A A A T A A A A A A A A A A A A
rs253301665
MGI SNP Detail
Chr4:8607951 Rr588547 1800 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27676312
MGI SNP Detail
Chr4:8607961 Rr588547 1810 bp distal
SNP C/T C C C C C C C C C C C C T C
rs27676311
MGI SNP Detail
Chr4:8607962 Rr588547 1811 bp distal
SNP A/G G G G G G A G G G G G G G G
rs27676310
MGI SNP Detail
Chr4:8608023 Rr588547 1872 bp distal
SNP C/T C C C C C T C C C C C C T C
rs212835531
MGI SNP Detail
Chr4:8608046 Rr588547 1895 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
<< first < prev1 next > last >>
Showing SNP(s) 1 - 75 of 75

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory