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Mouse SNP Summary
Symbol
Name
ID 		Rr593325
regulatory region 593325
MGI:8055457

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27892540
MGI SNP Detail
Alliance Variant		 Chr4:62417724 Hdhd3 Coding-NonSynonymous
Rr593325 1945 bp proximal
 SNP C/G G G G G G G C G G G G G G G G
rs229541154
MGI SNP Detail
Alliance Variant		 Chr4:62417728 Hdhd3 Coding-Synonymous
Rr593325 1941 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
rs250689220
MGI SNP Detail
Alliance Variant		 Chr4:62417922 Hdhd3 Coding-Synonymous
Rr593325 1747 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G
rs263757750
MGI SNP Detail
Alliance Variant		 Chr4:62417944 Hdhd3 Coding-Synonymous
Rr593325 1725 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G
rs232508094
MGI SNP Detail
Alliance Variant		 Chr4:62417960 Hdhd3 Coding-NonSynonymous
Rr593325 1709 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C T C C
rs27892539
MGI SNP Detail
Alliance Variant		 Chr4:62417982 Hdhd3 Coding-Synonymous
Rr593325 1687 bp proximal
 SNP A/G G G G G G G G G G G A G G G G
rs47795628
MGI SNP Detail
Alliance Variant		 Chr4:62417997 Hdhd3 Coding-NonSynonymous
Rr593325 1672 bp proximal
 SNP A A
rs27892538
MGI SNP Detail
Alliance Variant		 Chr4:62418045 Hdhd3 Coding-NonSynonymous
Rr593325 1624 bp proximal
 SNP C/T T T T T T T C T T T T C T T C C T
rs27892537
MGI SNP Detail
Alliance Variant		 Chr4:62418058 Hdhd3 Coding-Synonymous
Rr593325 1611 bp proximal
 SNP C/T C C C C C C C C C C T C C C C
rs214143554
MGI SNP Detail
Alliance Variant		 Chr4:62418103 Hdhd3 Coding-Synonymous
Rr593325 1566 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G
rs225541071
MGI SNP Detail
Alliance Variant		 Chr4:62418133 Hdhd3 Coding-Synonymous
Rr593325 1536 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T
rs243948035
MGI SNP Detail
Alliance Variant		 Chr4:62418148 Hdhd3 Coding-Synonymous
Rr593325 1521 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
rs211757294
MGI SNP Detail
Alliance Variant		 Chr4:62418345 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 1324 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
rs240272028
MGI SNP Detail
Alliance Variant		 Chr4:62418350 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 1319 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
rs263749844
MGI SNP Detail
Alliance Variant		 Chr4:62418358 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 1311 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A
rs216532685
MGI SNP Detail
Alliance Variant		 Chr4:62418395 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 1274 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
rs239870535
MGI SNP Detail
Alliance Variant		 Chr4:62418459 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 1210 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
rs250380985
MGI SNP Detail
Alliance Variant		 Chr4:62418553 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 1116 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G
rs219484277
MGI SNP Detail
Alliance Variant		 Chr4:62418606 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 1063 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
rs236897283
MGI SNP Detail
Alliance Variant		 Chr4:62418712 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 957 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs579328430
MGI SNP Detail
Alliance Variant		 Chr4:62418876 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 793 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs248216779
MGI SNP Detail
Alliance Variant		 Chr4:62418894 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 775 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G
rs27892536
MGI SNP Detail
Alliance Variant		 Chr4:62418953 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 716 bp proximal
 SNP C/G G G G G G G G G G G G G G C G
rs247945237
MGI SNP Detail
Alliance Variant		 Chr4:62418967 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 702 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs265821826
MGI SNP Detail
Alliance Variant		 Chr4:62418989 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 680 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232002116
MGI SNP Detail
Alliance Variant		 Chr4:62419038 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593324 within coordinates of
Rr593325 631 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247137489
MGI SNP Detail
Alliance Variant		 Chr4:62419044 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593324 within coordinates of
Rr593325 625 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257837691
MGI SNP Detail
Alliance Variant		 Chr4:62419097 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593324 within coordinates of
Rr593325 572 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs225500437
MGI SNP Detail
Alliance Variant		 Chr4:62419139 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593324 within coordinates of
Rr593325 530 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G
rs27892535
MGI SNP Detail
Alliance Variant		 Chr4:62419257 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593324 within coordinates of
Rr593325 412 bp proximal
 SNP A/G G G G G G G A G G G G G G G
rs27892534
MGI SNP Detail
Alliance Variant		 Chr4:62419258 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593324 within coordinates of
Rr593325 411 bp proximal
 SNP C/G C C C C C C C C C C C C C G
rs211719888
MGI SNP Detail
Alliance Variant		 Chr4:62419263 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593324 within coordinates of
Rr593325 406 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
rs234654494
MGI SNP Detail
Alliance Variant		 Chr4:62419381 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593324 within coordinates of
Rr593325 288 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G
rs27892533
MGI SNP Detail
Alliance Variant		 Chr4:62419385 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593324 within coordinates of
Rr593325 284 bp proximal
 SNP C/T T T T T T T T T C C
rs253883792
MGI SNP Detail
Alliance Variant		 Chr4:62419448 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593324 within coordinates of
Rr593325 221 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs27892532
MGI SNP Detail
Alliance Variant		 Chr4:62419523 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 146 bp proximal
 SNP C/T T T T C T T
rs237860541
MGI SNP Detail
Alliance Variant		 Chr4:62419527 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 142 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A
rs250341870
MGI SNP Detail
Alliance Variant		 Chr4:62419534 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 135 bp proximal
 SNP C/T T T T T T T T T T T T T T C T C T C T T T T C T T T T T C T T T T C T T T T
rs213546891
MGI SNP Detail
Alliance Variant		 Chr4:62419561 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 108 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248882667
MGI SNP Detail
Alliance Variant		 Chr4:62419595 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 74 bp proximal
 SNP A/G G A
rs248373031
MGI SNP Detail
Alliance Variant		 Chr4:62419728 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs27892531
MGI SNP Detail
Alliance Variant		 Chr4:62419867 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP A/T T T T T T T A T T T T T T A T
rs250204181
MGI SNP Detail
Alliance Variant		 Chr4:62419894 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs259541890
MGI SNP Detail
Alliance Variant		 Chr4:62419912 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27892530
MGI SNP Detail
Alliance Variant		 Chr4:62419974 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP C/G G G G G G G G G G G G G G C G
rs582262660
MGI SNP Detail
Alliance Variant		 Chr4:62420029 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs240113338
MGI SNP Detail
Alliance Variant		 Chr4:62420138 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T
rs257796686
MGI SNP Detail
Alliance Variant		 Chr4:62420183 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs6194073
MGI SNP Detail
Alliance Variant		 Chr4:62420228 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP C/G G G G G G G G C C G G G C G G C
rs222590708
MGI SNP Detail
Alliance Variant		 Chr4:62420247 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP A/C A C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246728673
MGI SNP Detail
Alliance Variant		 Chr4:62420248 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP G/T G T
rs27892529
MGI SNP Detail
Alliance Variant		 Chr4:62420336 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP G/T G G G G G G G G G G G G G T G
rs255857692
MGI SNP Detail
Alliance Variant		 Chr4:62420337 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs233663122
MGI SNP Detail
Alliance Variant		 Chr4:62420377 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs258795250
MGI SNP Detail
Alliance Variant		 Chr4:62420414 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 mRNA-UTR
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
Tssr42008 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs27892528
MGI SNP Detail
Alliance Variant		 Chr4:62420431 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 mRNA-UTR
Hdhd3 Noncoding-Transcript-Variant
Rr593325 within coordinates of
 SNP C/G C C C C C C C C C C C C C G C
rs232058670
MGI SNP Detail
Alliance Variant		 Chr4:62420510 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 mRNA-UTR
Hdhd3 Noncoding-Transcript-Variant
Rr593325 8 bp distal
Rr593326 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs244563911
MGI SNP Detail
Alliance Variant		 Chr4:62420515 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 13 bp distal
Rr593326 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs27892527
MGI SNP Detail
Alliance Variant		 Chr4:62420634 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 132 bp distal
Rr593326 within coordinates of
 SNP C/T T T T T T T T T T T T T T C T
rs230630963
MGI SNP Detail
Alliance Variant		 Chr4:62420673 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 171 bp distal
Rr593326 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T
rs242202376
MGI SNP Detail
Alliance Variant		 Chr4:62420727 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 225 bp distal
Rr593326 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
rs219249962
MGI SNP Detail
Alliance Variant		 Chr4:62420732 Cpgi14361 within coordinates of
Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 230 bp distal
Rr593326 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
rs239688932
MGI SNP Detail
Alliance Variant		 Chr4:62420795 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 293 bp distal
Rr593326 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs263378282
MGI SNP Detail
Alliance Variant		 Chr4:62420805 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 303 bp distal
Rr593326 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G
rs586114615
MGI SNP Detail
Alliance Variant		 Chr4:62420899 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 397 bp distal
Rr593326 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G
rs27892526
MGI SNP Detail
Alliance Variant		 Chr4:62420984 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 482 bp distal
Rr593326 within coordinates of
 SNP C/T C C C C C C C C C C C C C T C
rs233304365
MGI SNP Detail
Alliance Variant		 Chr4:62420994 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 492 bp distal
Rr593326 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs251603476
MGI SNP Detail
Alliance Variant		 Chr4:62421026 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 524 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs27892525
MGI SNP Detail
Alliance Variant		 Chr4:62421047 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 545 bp distal
 SNP A/G G G G G G G A G G G G G G G
rs27892524
MGI SNP Detail
Alliance Variant		 Chr4:62421051 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 549 bp distal
 SNP A/C C C C C C C C C C C C C C A
rs258530516
MGI SNP Detail
Alliance Variant		 Chr4:62421114 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 612 bp distal
 SNP A/G A G
rs264562271
MGI SNP Detail
Alliance Variant		 Chr4:62421136 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 634 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G
rs226849060
MGI SNP Detail
Alliance Variant		 Chr4:62421179 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 677 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G A G G
rs247163067
MGI SNP Detail
Alliance Variant		 Chr4:62421191 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 689 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A C A A A C A A
rs265626073
MGI SNP Detail
Alliance Variant		 Chr4:62421302 Hdhd3 Intron
Hdhd3 Noncoding-Transcript-Variant
Rr593325 800 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226574338
MGI SNP Detail
Alliance Variant		 Chr4:62421550 Hdhd3 Noncoding-Transcript-Variant
Rr593325 1048 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G
rs27892523
MGI SNP Detail
Alliance Variant		 Chr4:62421576 Hdhd3 Noncoding-Transcript-Variant
Rr593325 1074 bp distal
 SNP C/T C C C C C C C C C C C C C T C
rs27892522
MGI SNP Detail
Alliance Variant		 Chr4:62421599 Hdhd3 Noncoding-Transcript-Variant
Rr593325 1097 bp distal
 SNP A/C A A A A A A C A A A A A A A A
rs255313126
MGI SNP Detail
Alliance Variant		 Chr4:62421639 Hdhd3 Noncoding-Transcript-Variant
Rr593325 1137 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C
rs224336051
MGI SNP Detail
Alliance Variant		 Chr4:62421647 Hdhd3 Noncoding-Transcript-Variant
Rr593325 1145 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
rs27892521
MGI SNP Detail
Alliance Variant		 Chr4:62421648 Hdhd3 Noncoding-Transcript-Variant
Rr593325 1146 bp distal
 SNP A/C C C C C C C A C C C C C C C C
rs27892520
MGI SNP Detail
Alliance Variant		 Chr4:62421692 Hdhd3 Noncoding-Transcript-Variant
Rr593325 1190 bp distal
 SNP A/C A A A A A A C A A A A A A C
rs219023045
MGI SNP Detail		 Chr4:62421833 Rr593325 1331 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
rs224859207
MGI SNP Detail		 Chr4:62421906 Rr593325 1404 bp distal
 SNP A/G G A
rs253359049
MGI SNP Detail		 Chr4:62421935 Rr593325 1433 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs27892519
MGI SNP Detail		 Chr4:62421944 Rr593325 1442 bp distal
 SNP C/T T T T T T T C T T T T C T T T C T
rs27892518
MGI SNP Detail		 Chr4:62421967 Rr593325 1465 bp distal
 SNP A/G G G G G G G A G G G G A G G G A
rs223899887
MGI SNP Detail		 Chr4:62422020 Rr593325 1518 bp distal
 SNP C/G C G
rs237776797
MGI SNP Detail		 Chr4:62422021 Rr593325 1519 bp distal
 SNP C/T C T
rs264958228
MGI SNP Detail		 Chr4:62422256 Rr593325 1754 bp distal
 SNP C/T C T
rs219159056
MGI SNP Detail		 Chr4:62422321 Rr593325 1819 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
rs230487866
MGI SNP Detail		 Chr4:62422343 Rr593325 1841 bp distal
 SNP A/G G A
rs264354304
MGI SNP Detail		 Chr4:62422353 Rr593325 1851 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs256553125
MGI SNP Detail		 Chr4:62422363 Rr593325 1861 bp distal
 SNP C/G G C
rs579761417
MGI SNP Detail		 Chr4:62422407 Rr593325 1905 bp distal
 SNP C/G C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C
rs226102810
MGI SNP Detail		 Chr4:62422450 Rr593325 1948 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
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Showing SNP(s) 1 - 96 of 96
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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