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Mouse SNP Summary
Symbol
Name
ID 		Rr597314
regulatory region 597314
MGI:8059446

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32669596
MGI SNP Detail
Alliance Variant		 Chr4:109262369 Rr597311 within coordinates of
Rr597314 1949 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T T C C T
rs235313021
MGI SNP Detail
Alliance Variant		 Chr4:109262380 Rr597311 within coordinates of
Rr597314 1938 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32534790
MGI SNP Detail
Alliance Variant		 Chr4:109262381 Rr597311 within coordinates of
Rr597314 1937 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/T A T A
rs32055052
MGI SNP Detail
Alliance Variant		 Chr4:109262405 Rr597311 within coordinates of
Rr597314 1913 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T C T T C
rs236214466
MGI SNP Detail
Alliance Variant		 Chr4:109262467 Rr597311 within coordinates of
Rr597314 1851 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs262446696
MGI SNP Detail
Alliance Variant		 Chr4:109262469 Rr597311 within coordinates of
Rr597314 1849 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254445258
MGI SNP Detail
Alliance Variant		 Chr4:109262507 Rr597311 within coordinates of
Rr597314 1811 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A A A
rs220325806
MGI SNP Detail
Alliance Variant		 Chr4:109262533 Rr597311 within coordinates of
Rr597314 1785 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs31937330
MGI SNP Detail
Alliance Variant		 Chr4:109262540 Rr597311 within coordinates of
Rr597314 1778 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T C T C C
rs260486663
MGI SNP Detail
Alliance Variant		 Chr4:109262577 Rr597311 within coordinates of
Rr597314 1741 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223306393
MGI SNP Detail
Alliance Variant		 Chr4:109262609 Rr597311 within coordinates of
Rr597314 1709 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31960096
MGI SNP Detail
Alliance Variant		 Chr4:109262644 Rr597311 within coordinates of
Rr597314 1674 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/G G A
rs259625480
MGI SNP Detail
Alliance Variant		 Chr4:109262664 Rr597311 within coordinates of
Rr597314 1654 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232054511
MGI SNP Detail
Alliance Variant		 Chr4:109262666 Rr597311 within coordinates of
Rr597314 1652 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP G G G
rs243702350
MGI SNP Detail
Alliance Variant		 Chr4:109262696 Rr597311 within coordinates of
Rr597314 1622 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs265395115
MGI SNP Detail
Alliance Variant		 Chr4:109262699 Rr597311 within coordinates of
Rr597314 1619 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs228087094
MGI SNP Detail
Alliance Variant		 Chr4:109262724 Rr597311 within coordinates of
Rr597314 1594 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254544389
MGI SNP Detail
Alliance Variant		 Chr4:109262780 Rr597311 within coordinates of
Rr597314 1538 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs216919906
MGI SNP Detail
Alliance Variant		 Chr4:109262846 Rr597311 within coordinates of
Rr597314 1472 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257768540
MGI SNP Detail
Alliance Variant		 Chr4:109262860 Rr597311 within coordinates of
Rr597314 1458 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A A A
rs215166908
MGI SNP Detail
Alliance Variant		 Chr4:109262861 Rr597311 within coordinates of
Rr597314 1457 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP G G G
rs586748821
MGI SNP Detail
Alliance Variant		 Chr4:109262926 Rr597311 within coordinates of
Rr597314 1392 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216061499
MGI SNP Detail
Alliance Variant		 Chr4:109262964 Rr597311 within coordinates of
Rr597314 1354 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238180566
MGI SNP Detail
Alliance Variant		 Chr4:109262984 Rr597311 within coordinates of
Rr597314 1334 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33030728
MGI SNP Detail
Alliance Variant		 Chr4:109263047 Rr597311 within coordinates of
Rr597314 1271 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212217247
MGI SNP Detail
Alliance Variant		 Chr4:109263050 Rr597311 within coordinates of
Rr597314 1268 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs46524171
MGI SNP Detail
Alliance Variant		 Chr4:109263065 Rr597311 within coordinates of
Rr597314 1253 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP G G G G
rs32996753
MGI SNP Detail
Alliance Variant		 Chr4:109263102 Rr597311 within coordinates of
Rr597314 1216 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T T T C
rs223344238
MGI SNP Detail
Alliance Variant		 Chr4:109263105 Rr597311 within coordinates of
Rr597314 1213 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs240328073
MGI SNP Detail
Alliance Variant		 Chr4:109263117 Rr597311 within coordinates of
Rr597314 1201 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs253422922
MGI SNP Detail
Alliance Variant		 Chr4:109263159 Rr597311 within coordinates of
Rr597314 1159 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49542726
MGI SNP Detail
Alliance Variant		 Chr4:109263161 Rr597311 within coordinates of
Rr597314 1157 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP G G G
rs246513466
MGI SNP Detail
Alliance Variant		 Chr4:109263216 Rr597311 within coordinates of
Rr597314 1102 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs261217601
MGI SNP Detail
Alliance Variant		 Chr4:109263217 Rr597311 within coordinates of
Rr597314 1101 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228794005
MGI SNP Detail
Alliance Variant		 Chr4:109263255 Rr597311 within coordinates of
Rr597314 1063 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs237059460
MGI SNP Detail
Alliance Variant		 Chr4:109263292 Rr597311 within coordinates of
Rr597314 1026 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259352433
MGI SNP Detail
Alliance Variant		 Chr4:109263314 Rr597311 within coordinates of
Rr597314 1004 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229492220
MGI SNP Detail
Alliance Variant		 Chr4:109263316 Rr597311 within coordinates of
Rr597314 1002 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32171565
MGI SNP Detail
Alliance Variant		 Chr4:109263388 Rr597311 within coordinates of
Rr597314 930 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T T T C
rs216100772
MGI SNP Detail
Alliance Variant		 Chr4:109263416 Rr597311 within coordinates of
Rr597314 902 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
Ttc39aos1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230130488
MGI SNP Detail
Alliance Variant		 Chr4:109263541 Rr597313 within coordinates of
Rr597314 777 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256427334
MGI SNP Detail
Alliance Variant		 Chr4:109263578 Rr597313 within coordinates of
Rr597314 740 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs32431815
MGI SNP Detail
Alliance Variant		 Chr4:109263624 Rr597313 within coordinates of
Rr597314 694 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G G G G A G G
rs237294754
MGI SNP Detail
Alliance Variant		 Chr4:109263667 Rr597313 within coordinates of
Rr597314 651 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254353909
MGI SNP Detail
Alliance Variant		 Chr4:109263725 Rr597313 within coordinates of
Rr597314 593 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs217362610
MGI SNP Detail
Alliance Variant		 Chr4:109263870 Cpgi14573 within coordinates of
Rr597313 within coordinates of
Rr597314 448 bp proximal
Ttc39a Intron
Ttc39a mRNA-UTR
Ttc39a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233781633
MGI SNP Detail
Alliance Variant		 Chr4:109263932 Cpgi14573 within coordinates of
Rr597313 within coordinates of
Rr597314 386 bp proximal
Ttc39a Intron
Ttc39a mRNA-UTR
Ttc39a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32231662
MGI SNP Detail
Alliance Variant		 Chr4:109264022 Cpgi14573 within coordinates of
Rr597313 within coordinates of
Rr597314 296 bp proximal
Ttc39a Intron
Ttc39a mRNA-UTR
Ttc39a Noncoding-Transcript-Variant
 SNP C/T T C T
rs32857921
MGI SNP Detail
Alliance Variant		 Chr4:109264122 Cpgi14573 within coordinates of
Rr597313 within coordinates of
Rr597314 196 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G A G A G
rs32617068
MGI SNP Detail
Alliance Variant		 Chr4:109264147 Cpgi14573 within coordinates of
Rr597313 within coordinates of
Rr597314 171 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G A G A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32126685
MGI SNP Detail
Alliance Variant		 Chr4:109264152 Cpgi14573 within coordinates of
Rr597313 within coordinates of
Rr597314 166 bp proximal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/G G C
rs585197551
MGI SNP Detail
Alliance Variant		 Chr4:109264239 Cpgi14573 within coordinates of
Rr597313 within coordinates of
Rr597314 79 bp proximal
Ttc39a Intron
Ttc39a mRNA-UTR
Ttc39a Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs221024987
MGI SNP Detail
Alliance Variant		 Chr4:109264258 Cpgi14573 within coordinates of
Rr597313 within coordinates of
Rr597314 60 bp proximal
Ttc39a Intron
Ttc39a mRNA-UTR
Ttc39a Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G
rs240480957
MGI SNP Detail
Alliance Variant		 Chr4:109264285 Cpgi14573 within coordinates of
Rr597313 within coordinates of
Rr597314 33 bp proximal
Ttc39a Intron
Ttc39a mRNA-UTR
Ttc39a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs259445015
MGI SNP Detail
Alliance Variant		 Chr4:109264305 Cpgi14573 within coordinates of
Rr597313 within coordinates of
Rr597314 13 bp proximal
Tssr38346 within coordinates of
Ttc39a Intron
Ttc39a mRNA-UTR
Ttc39a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C
rs223043856
MGI SNP Detail
Alliance Variant		 Chr4:109264355 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Tssr38347 within coordinates of
Ttc39a Intron
Ttc39a mRNA-UTR
Ttc39a Noncoding-Transcript-Variant
 SNP C/G C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs239507247
MGI SNP Detail
Alliance Variant		 Chr4:109264432 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T T T T C C C T C C C C C C C C C T T T T C T C T T C C T C C C T C C C T C C C C T T T
rs263768723
MGI SNP Detail
Alliance Variant		 Chr4:109264443 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs230470488
MGI SNP Detail
Alliance Variant		 Chr4:109264502 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs251670524
MGI SNP Detail
Alliance Variant		 Chr4:109264503 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32506900
MGI SNP Detail
Alliance Variant		 Chr4:109264627 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/C/T C A T T
rs50751909
MGI SNP Detail
Alliance Variant		 Chr4:109264736 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP G G G G
rs248057323
MGI SNP Detail
Alliance Variant		 Chr4:109264774 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs50411381
MGI SNP Detail
Alliance Variant		 Chr4:109264792 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP G G G G G
rs233829464
MGI SNP Detail
Alliance Variant		 Chr4:109264805 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
rs247181455
MGI SNP Detail
Alliance Variant		 Chr4:109264916 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs585037152
MGI SNP Detail
Alliance Variant		 Chr4:109264922 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP G/T G G G G G T T T G T T T T T T G G T T T T G G G G G G G G G G G T T G T T T T G T T T G T T G T G G G
rs51288623
MGI SNP Detail
Alliance Variant		 Chr4:109264926 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G G G A G
rs238779311
MGI SNP Detail
Alliance Variant		 Chr4:109264961 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G G A
rs213609389
MGI SNP Detail
Alliance Variant		 Chr4:109264962 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238851464
MGI SNP Detail
Alliance Variant		 Chr4:109264966 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs51112229
MGI SNP Detail
Alliance Variant		 Chr4:109264968 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/T A A T A
rs218004050
MGI SNP Detail
Alliance Variant		 Chr4:109265000 Cpgi14573 within coordinates of
Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C C C
rs233999807
MGI SNP Detail
Alliance Variant		 Chr4:109265168 Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs252918061
MGI SNP Detail
Alliance Variant		 Chr4:109265211 Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223133822
MGI SNP Detail
Alliance Variant		 Chr4:109265248 Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
rs32500339
MGI SNP Detail
Alliance Variant		 Chr4:109265394 Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G A A G A G A
rs32912245
MGI SNP Detail
Alliance Variant		 Chr4:109265405 Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/G G G C G C G
rs222817995
MGI SNP Detail
Alliance Variant		 Chr4:109265417 Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247161785
MGI SNP Detail
Alliance Variant		 Chr4:109265424 Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32257204
MGI SNP Detail
Alliance Variant		 Chr4:109265457 Rr597314 within coordinates of
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G G G A G G G
rs225104203
MGI SNP Detail
Alliance Variant		 Chr4:109265614 Rr597314 9 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248096114
MGI SNP Detail
Alliance Variant		 Chr4:109265659 Rr597314 54 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261326368
MGI SNP Detail
Alliance Variant		 Chr4:109265678 Rr597314 73 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49696101
MGI SNP Detail
Alliance Variant		 Chr4:109265759 Rr597314 154 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A A A A A
rs253133323
MGI SNP Detail
Alliance Variant		 Chr4:109265765 Rr597314 160 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214134394
MGI SNP Detail
Alliance Variant		 Chr4:109265795 Rr597314 190 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs49556368
MGI SNP Detail
Alliance Variant		 Chr4:109265797 Rr597314 192 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C C C C C
rs6298907
MGI SNP Detail
Alliance Variant		 Chr4:109265916 Rr597314 311 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T T C C C
rs212600903
MGI SNP Detail
Alliance Variant		 Chr4:109266058 Rr597314 453 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234081492
MGI SNP Detail
Alliance Variant		 Chr4:109266064 Rr597314 459 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs6299952
MGI SNP Detail
Alliance Variant		 Chr4:109266086 Rr597314 481 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T C C T C C
rs582274662
MGI SNP Detail
Alliance Variant		 Chr4:109266087 Rr597314 482 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs220442711
MGI SNP Detail
Alliance Variant		 Chr4:109266099 Rr597314 494 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G A A A G G G A G G G G G G G A A G G G G A A A A A G A A A A G A G G G G A G G G A G G A A A A
rs233215252
MGI SNP Detail
Alliance Variant		 Chr4:109266104 Rr597314 499 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C C C C C C C C
rs51918478
MGI SNP Detail
Alliance Variant		 Chr4:109266105 Rr597314 500 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP G G G G
rs50132545
MGI SNP Detail
Alliance Variant		 Chr4:109266147 Rr597314 542 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A A A A
rs6300039
MGI SNP Detail
Alliance Variant		 Chr4:109266151 Rr597314 546 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP C/T T T C T T
rs586482443
MGI SNP Detail
Alliance Variant		 Chr4:109266195 Rr597314 590 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs6300547
MGI SNP Detail
Alliance Variant		 Chr4:109266214 Rr597314 609 bp distal
Ttc39a Intron
Ttc39a Noncoding-Transcript-Variant
 SNP A/T A T
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Showing SNP(s) 1 - 100 of 132
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory