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Mouse SNP Summary
Symbol
Name
ID 		Rr598285
regulatory region 598285
MGI:8060417

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs48043608
MGI SNP Detail
Alliance Variant		 Chr4:117886152 Rr598285 1995 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G G G
rs246271422
MGI SNP Detail
Alliance Variant		 Chr4:117886161 Rr598285 1986 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs260126751
MGI SNP Detail
Alliance Variant		 Chr4:117886171 Rr598285 1976 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C T C C C C C C C C C C C C C C C C C T C C C T T T C C C C T C C C C C C T C C C C C C C C C C C C
rs221143753
MGI SNP Detail
Alliance Variant		 Chr4:117886186 Rr598285 1961 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs50504474
MGI SNP Detail
Alliance Variant		 Chr4:117886195 Rr598283 within coordinates of
Rr598285 1952 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A A A
rs50497183
MGI SNP Detail
Alliance Variant		 Chr4:117886241 Rr598283 within coordinates of
Rr598285 1906 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A A A
rs229217899
MGI SNP Detail
Alliance Variant		 Chr4:117886245 Rr598283 within coordinates of
Rr598285 1902 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C T C C C C C C C C C C C C C C T C C T C C C T T T C C C C T C C C C C C T C C C C C C C C C C C C
rs51299051
MGI SNP Detail
Alliance Variant		 Chr4:117886249 Rr598283 within coordinates of
Rr598285 1898 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/G C G G
rs50342954
MGI SNP Detail
Alliance Variant		 Chr4:117886350 Rr598283 within coordinates of
Rr598285 1797 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T C C
rs49187144
MGI SNP Detail
Alliance Variant		 Chr4:117886381 Rr598283 within coordinates of
Rr598285 1766 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C T
rs229827498
MGI SNP Detail
Alliance Variant		 Chr4:117886398 Rr598283 within coordinates of
Rr598285 1749 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
Tssr43028 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245854810
MGI SNP Detail
Alliance Variant		 Chr4:117886405 Rr598283 within coordinates of
Rr598285 1742 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
Tssr43028 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs215002894
MGI SNP Detail
Alliance Variant		 Chr4:117886423 Rr598283 within coordinates of
Rr598285 1724 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
Tssr43028 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs229001268
MGI SNP Detail
Alliance Variant		 Chr4:117886445 Rr598283 within coordinates of
Rr598285 1702 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs246415767
MGI SNP Detail
Alliance Variant		 Chr4:117886453 Rr598283 within coordinates of
Rr598285 1694 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G/T G G G G T G G G G G G G G G G G G G G T G G T G G G T T T G G G G T G G G G G G T G G G G G G G T G G G G
rs49530012
MGI SNP Detail
Alliance Variant		 Chr4:117886597 Rr598285 1550 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C T T
rs235860119
MGI SNP Detail
Alliance Variant		 Chr4:117886606 Rr598285 1541 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C T C C C C C C C C C C C C C C T C C T C C C T T T C C C C T C C C C C C T C C C C C C C C C C C C
rs50467366
MGI SNP Detail
Alliance Variant		 Chr4:117886615 Rr598285 1532 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G A A A G
rs50310527
MGI SNP Detail
Alliance Variant		 Chr4:117886639 Rr598285 1508 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/G C G G
rs45716372
MGI SNP Detail
Alliance Variant		 Chr4:117886654 Rr598285 1493 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G A A
rs253832772
MGI SNP Detail
Alliance Variant		 Chr4:117886703 Rr598285 1444 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/C C C C C A C C C C C C C C C C C C C C A C C A C C C A A A C C C C A C C C C C C A C C C C C C C A C C C C
rs221172995
MGI SNP Detail
Alliance Variant		 Chr4:117886727 Rr598285 1420 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C T C C C C C C C C C C C C C C C C C T C C C T T T C C C C T C C C C C C T C C C C C C C T C C C C
rs242898804
MGI SNP Detail
Alliance Variant		 Chr4:117886746 Rr598285 1401 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/G G G G G C G G G G G G G G G G G G G G G G G C G G G C C C G G G G C G G G G G G C G G G G G G G G G G G G
rs263794353
MGI SNP Detail
Alliance Variant		 Chr4:117886755 Rr598285 1392 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs221732824
MGI SNP Detail
Alliance Variant		 Chr4:117886814 Rr598285 1333 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244107340
MGI SNP Detail
Alliance Variant		 Chr4:117886815 Rr598285 1332 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs262782204
MGI SNP Detail
Alliance Variant		 Chr4:117886873 Rr598285 1274 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs48292339
MGI SNP Detail
Alliance Variant		 Chr4:117886912 Rr598285 1235 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/G G C C
rs239923177
MGI SNP Detail
Alliance Variant		 Chr4:117886913 Rr598285 1234 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G G A G G G G G G G G G G G G G G G G G A G G G A A A G G G G A G G G G G G A G G G G G G G G G G G G
rs243992357
MGI SNP Detail
Alliance Variant		 Chr4:117886927 Rr598285 1220 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T C
rs582007511
MGI SNP Detail
Alliance Variant		 Chr4:117886933 Rr598285 1214 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs212970571
MGI SNP Detail
Alliance Variant		 Chr4:117886958 Rr598285 1189 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T T T C C T T T T T T T T T T T T T T C T T C T C C C T T T T C T T T T T T C T T T T T T T C T T T T
rs227317055
MGI SNP Detail
Alliance Variant		 Chr4:117886966 Rr598285 1181 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C T C C C C C C C C C C C C C C C C C T C T T T C C C C T C C C C C C T C C C C C C C C C C C C
rs255838369
MGI SNP Detail
Alliance Variant		 Chr4:117887019 Rr598285 1128 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G G A G G G G G G G G G G G G G G G G G A G G G A A A G G G G A G G G G G G A G G G G G G G G G G G G
rs45647079
MGI SNP Detail
Alliance Variant		 Chr4:117887024 Rr598285 1123 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G A G G G A
rs232207744
MGI SNP Detail
Alliance Variant		 Chr4:117887035 Rr598285 1112 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G G A G G G G G G G G G G G G G G A G G A G G G A A A G G G G A G G G G G G A G G G G G G G G G G G G
rs253868350
MGI SNP Detail
Alliance Variant		 Chr4:117887060 Rr598285 1087 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G G A G G G G G G G G G G G G G G G G G A G G G A A A G G G G A G G G G G G A G G G G G G G G G G G G
rs215403129
MGI SNP Detail
Alliance Variant		 Chr4:117887065 Rr598285 1082 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236671182
MGI SNP Detail
Alliance Variant		 Chr4:117887142 Rr598285 1005 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/G C C C C G C C C C C C C C C C C C C C C C C G C C C G G G C C C C G C C C C C C G C C C C C C C C C C C C
rs260439799
MGI SNP Detail
Alliance Variant		 Chr4:117887188 Rr598285 959 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C T T C C C C C C C C C C C C C C C C C T T T C T T T C C C C T C C C C C C T C C C C C C C T C C C C
rs221279451
MGI SNP Detail
Alliance Variant		 Chr4:117887250 Rr598284 within coordinates of
Rr598285 897 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241323390
MGI SNP Detail
Alliance Variant		 Chr4:117887292 Rr598284 within coordinates of
Rr598285 855 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T T T T C T T T T T T T T T T T T T T C T T C T T T C C C T T T T C T T T T T T C T T T T T T T C T T T T
rs223534447
MGI SNP Detail
Alliance Variant		 Chr4:117887315 Rr598284 within coordinates of
Rr598285 832 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G/T T G
rs219365468
MGI SNP Detail
Alliance Variant		 Chr4:117887467 Rr598284 within coordinates of
Rr598285 680 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs50907125
MGI SNP Detail
Alliance Variant		 Chr4:117887500 Rr598284 within coordinates of
Rr598285 647 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/T T T T A T T T T T T T T T T T T T T T T T T T A A T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs257190898
MGI SNP Detail
Alliance Variant		 Chr4:117887612 Rr598284 within coordinates of
Rr598285 535 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48012576
MGI SNP Detail
Alliance Variant		 Chr4:117887618 Rr598284 within coordinates of
Rr598285 529 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C T C C C C C C C C C C C C C C C C C C C T T C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs45681035
MGI SNP Detail
Alliance Variant		 Chr4:117887650 Rr598284 within coordinates of
Rr598285 497 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C T T
rs261842365
MGI SNP Detail
Alliance Variant		 Chr4:117887685 Rr598284 within coordinates of
Rr598285 462 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G G A G G G G G G G G G G G G G G G G G A G G G A A A G G G G A G G G G G G A G G G G G G G G G G G G
rs49951078
MGI SNP Detail
Alliance Variant		 Chr4:117887697 Rr598284 within coordinates of
Rr598285 450 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251201931
MGI SNP Detail
Alliance Variant		 Chr4:117887707 Rr598284 within coordinates of
Rr598285 440 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G/T T T T T G T T T T T T T T T T T T T T T T T G T T T G G G T T T T G T T T T T T G T T T T T T T G T T T T
rs586288945
MGI SNP Detail
Alliance Variant		 Chr4:117887824 Rr598284 within coordinates of
Rr598285 323 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G/T G G G G T G G G G G G G G G G G G G G G G G T G G G T T T G G G G T G G G G G G T G G G G G G G G G G G G
rs50157956
MGI SNP Detail
Alliance Variant		 Chr4:117887834 Rr598284 within coordinates of
Rr598285 313 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G A G G
rs226154837
MGI SNP Detail
Alliance Variant		 Chr4:117887857 Rr598284 within coordinates of
Rr598285 290 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T T T C C T T T T T T T T T T T T T T T T T C C C T C C C T T T C T T T T T T C T T T T T T T C T T T T
rs580144467
MGI SNP Detail
Alliance Variant		 Chr4:117887876 Rr598284 within coordinates of
Rr598285 271 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs218533917
MGI SNP Detail
Alliance Variant		 Chr4:117887881 Rr598284 within coordinates of
Rr598285 266 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A A A
rs215530348
MGI SNP Detail
Alliance Variant		 Chr4:117887940 Rr598284 within coordinates of
Rr598285 207 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C T C C C C C C C C C C C C C C T C C T C C C T T T C C C T C C C C C C T C C C C C C C C C C C C
rs236703747
MGI SNP Detail
Alliance Variant		 Chr4:117887981 Rr598285 166 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259467372
MGI SNP Detail
Alliance Variant		 Chr4:117888006 Rr598285 141 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/G G G G G C G G G G G G G G G G G G C G G C G G G C C G G C G G G G G G G G G G G G C G G G G
rs241587436
MGI SNP Detail
Alliance Variant		 Chr4:117888035 Rr598285 112 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T C
rs586455880
MGI SNP Detail
Alliance Variant		 Chr4:117888124 Rr598285 23 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C T C C C C C C C C C C C C C C C C
rs213032960
MGI SNP Detail
Alliance Variant		 Chr4:117888142 Rr598285 5 bp proximal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G A A G G G G G G G G G G G A G G A G A G G G A G G G G G G G G G A G G G
rs236434396
MGI SNP Detail
Alliance Variant		 Chr4:117888169 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T T T T C T T T T T T T T T T T T T T C T T C T T T C C C T T T T C T T T T T T C T T T T T T T T T T T
rs257949305
MGI SNP Detail
Alliance Variant		 Chr4:117888179 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs219477667
MGI SNP Detail
Alliance Variant		 Chr4:117888196 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs233631480
MGI SNP Detail
Alliance Variant		 Chr4:117888204 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32326343
MGI SNP Detail
Alliance Variant		 Chr4:117888221 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T C T
rs222637215
MGI SNP Detail
Alliance Variant		 Chr4:117888223 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs247332746
MGI SNP Detail
Alliance Variant		 Chr4:117888231 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G G A G G G G G G G G G G G G G G G G G A G G G A A A G G G G A G G G G G G A G G G G G G G G G G G G
rs583189422
MGI SNP Detail
Alliance Variant		 Chr4:117888292 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G G A G G G G G G G G G G G G G G G G G G G G G A A A G G G G A G G G G G G G G G G G G G G G G G G G
rs264819562
MGI SNP Detail
Alliance Variant		 Chr4:117888508 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs220105785
MGI SNP Detail
Alliance Variant		 Chr4:117888509 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259037143
MGI SNP Detail
Alliance Variant		 Chr4:117888637 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C T
rs586204023
MGI SNP Detail
Alliance Variant		 Chr4:117888675 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T T C C T T T T T T T T T T T T T T T T C T T T
rs579986667
MGI SNP Detail
Alliance Variant		 Chr4:117888681 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257322594
MGI SNP Detail
Alliance Variant		 Chr4:117888721 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs214659092
MGI SNP Detail
Alliance Variant		 Chr4:117888786 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G G G
rs246149369
MGI SNP Detail
Alliance Variant		 Chr4:117888793 Rr598285 within coordinates of
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C C C C C C C C C C C C C
rs259520130
MGI SNP Detail
Alliance Variant		 Chr4:117888891 Rr598285 10 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229537444
MGI SNP Detail
Alliance Variant		 Chr4:117888991 Rr598285 110 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs254204734
MGI SNP Detail
Alliance Variant		 Chr4:117888997 Rr598285 116 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs32094184
MGI SNP Detail
Alliance Variant		 Chr4:117889137 Rr598285 256 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G/T T G G G T
rs234857720
MGI SNP Detail
Alliance Variant		 Chr4:117889199 Rr598285 318 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G G A G G G G G G G G G G G G G G G G G A G G G A A A G G G G A G G G G G G A G G G G G G G G G G G G
rs250161570
MGI SNP Detail
Alliance Variant		 Chr4:117889213 Rr598285 332 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/C C A
rs213798936
MGI SNP Detail
Alliance Variant		 Chr4:117889216 Rr598285 335 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233664595
MGI SNP Detail
Alliance Variant		 Chr4:117889217 Rr598285 336 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217958377
MGI SNP Detail
Alliance Variant		 Chr4:117889255 Rr598285 374 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T C
rs248021521
MGI SNP Detail
Alliance Variant		 Chr4:117889257 Rr598285 376 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G G G
rs242000420
MGI SNP Detail
Alliance Variant		 Chr4:117889265 Rr598285 384 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs256149636
MGI SNP Detail
Alliance Variant		 Chr4:117889272 Rr598285 391 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220004768
MGI SNP Detail
Alliance Variant		 Chr4:117889324 Rr598285 443 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243959796
MGI SNP Detail
Alliance Variant		 Chr4:117889378 Rr598285 497 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257363351
MGI SNP Detail
Alliance Variant		 Chr4:117889442 Rr598285 561 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221564602
MGI SNP Detail
Alliance Variant		 Chr4:117889504 Rr598285 623 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27510100
MGI SNP Detail
Alliance Variant		 Chr4:117889570 Rr598285 689 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G A G G G G A G G A
rs260987491
MGI SNP Detail
Alliance Variant		 Chr4:117889581 Rr598285 700 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs234239817
MGI SNP Detail
Alliance Variant		 Chr4:117889588 Rr598285 707 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250569404
MGI SNP Detail
Alliance Variant		 Chr4:117889604 Rr598285 723 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27510099
MGI SNP Detail
Alliance Variant		 Chr4:117889607 Rr598285 726 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP A/G G G A G G G G G G
rs228662220
MGI SNP Detail
Alliance Variant		 Chr4:117889610 Rr598285 729 bp distal
St3gal3 Intron
St3gal3 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 100 of 152
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory
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