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Mouse SNP Summary
Symbol
Name
ID 		Rr600423
regulatory region 600423
MGI:8062555

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs31984123
MGI SNP Detail		 Chr4:129939829 Gm12963 within coordinates of
Rr600419 within coordinates of
Rr600423 1815 bp proximal
 SNP A/T T T A T A
rs27492105
MGI SNP Detail		 Chr4:129939864 Gm12963 within coordinates of
Rr600419 within coordinates of
Rr600423 1780 bp proximal
 SNP C/T T T T T C T C C T C T T C T
rs27492104
MGI SNP Detail		 Chr4:129939881 Gm12963 within coordinates of
Rr600419 within coordinates of
Rr600423 1763 bp proximal
 SNP C/T C C C C C T C C T C T C C T T C
rs263747860
MGI SNP Detail		 Chr4:129940026 Gm12963 within coordinates of
Rr600423 1618 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs32360558
MGI SNP Detail		 Chr4:129940040 Gm12963 within coordinates of
Rr600423 1604 bp proximal
 SNP A/G A A G A A G
rs32711847
MGI SNP Detail		 Chr4:129940051 Gm12963 within coordinates of
Rr600423 1593 bp proximal
 SNP C/T T T C T T C
rs257894128
MGI SNP Detail		 Chr4:129940084 Gm12963 within coordinates of
Rr600423 1560 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32057085
MGI SNP Detail		 Chr4:129940153 Gm12963 within coordinates of
Rr600423 1491 bp proximal
 SNP A/C C C A C C A
rs243564841
MGI SNP Detail		 Chr4:129940214 Gm12963 within coordinates of
Rr600423 1430 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32371004
MGI SNP Detail		 Chr4:129940384 Gm12963 within coordinates of
Rr600423 1260 bp proximal
 SNP C/T C T C C T
rs233235693
MGI SNP Detail		 Chr4:129940405 Gm12963 within coordinates of
Rr600423 1239 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs52444198
MGI SNP Detail		 Chr4:129940443 Gm12963 within coordinates of
Rr600423 1201 bp proximal
 SNP T T T
rs52312172
MGI SNP Detail		 Chr4:129940449 Gm12963 within coordinates of
Rr600423 1195 bp proximal
 SNP T T T
rs108716316
MGI SNP Detail		 Chr4:129940461 Gm12963 within coordinates of
Rr600423 1183 bp proximal
 SNP T T T
rs213604664
MGI SNP Detail		 Chr4:129940536 Gm12963 within coordinates of
Rr600423 1108 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230441033
MGI SNP Detail		 Chr4:129940537 Gm12963 within coordinates of
Rr600423 1107 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs52363353
MGI SNP Detail		 Chr4:129940626 Gm12963 within coordinates of
Rr600423 1018 bp proximal
 SNP A/G A A A G
rs226880654
MGI SNP Detail		 Chr4:129940814 Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 830 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs51150718
MGI SNP Detail		 Chr4:129940845 Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 799 bp proximal
 SNP G/T T T T G
rs263218087
MGI SNP Detail		 Chr4:129940851 Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 793 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs224490758
MGI SNP Detail		 Chr4:129940907 Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 737 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs239978828
MGI SNP Detail		 Chr4:129940916 Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 728 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs257940200
MGI SNP Detail		 Chr4:129940932 Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 712 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs219171831
MGI SNP Detail		 Chr4:129940950 Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 694 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs50800679
MGI SNP Detail		 Chr4:129940984 Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 660 bp proximal
 SNP A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs52266955
MGI SNP Detail		 Chr4:129941030 Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 614 bp proximal
 SNP C/T C C C T
rs264445872
MGI SNP Detail		 Chr4:129941054 Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 590 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs49288687
MGI SNP Detail		 Chr4:129941087 Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 557 bp proximal
 SNP C/T T T T T C
rs50144776
MGI SNP Detail		 Chr4:129941145 Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 499 bp proximal
 SNP C/T T T T T C
rs265545043
MGI SNP Detail		 Chr4:129941194 Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 450 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226762000
MGI SNP Detail		 Chr4:129941236 Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 408 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244427746
MGI SNP Detail		 Chr4:129941331 Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 313 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs213620881
MGI SNP Detail		 Chr4:129941385 Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 259 bp proximal
Tssr1308 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs32936257
MGI SNP Detail		 Chr4:129941488 Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 156 bp proximal
 SNP A/G A A G A
rs32090012
MGI SNP Detail		 Chr4:129941489 Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 155 bp proximal
 SNP C/T T C C C
rs31940619
MGI SNP Detail		 Chr4:129941507 Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 137 bp proximal
 SNP A/G A A G A
rs46428196
MGI SNP Detail		 Chr4:129941519 Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 125 bp proximal
 SNP C C C C
rs259247982
MGI SNP Detail		 Chr4:129941531 Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600421 within coordinates of
Rr600423 113 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T C T T T T T T T T T T T C T C T C T C T
rs387865486
MGI SNP Detail		 Chr4:129941544 Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600422 within coordinates of
Rr600423 100 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G A G G G G G G G G G G G A G A G G G A G
rs220784644
MGI SNP Detail		 Chr4:129941608 Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600422 within coordinates of
Rr600423 36 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27492103
MGI SNP Detail
Alliance Variant		 Chr4:129941665 Col16a1 mRNA-UTR
Cpgi14919 within coordinates of
Gm12963 within coordinates of
Rr600423 within coordinates of
Tssr39218 within coordinates of
 SNP C/G C C C C C C G C G C C C G C
rs27492102
MGI SNP Detail
Alliance Variant		 Chr4:129941921 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Gm12963 within coordinates of
Rr600423 within coordinates of
 SNP G/T T T T T T G T G T T T G T
rs33007208
MGI SNP Detail
Alliance Variant		 Chr4:129942003 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Gm12963 within coordinates of
Rr600423 within coordinates of
 SNP A/G A A G A A G
rs237679019
MGI SNP Detail
Alliance Variant		 Chr4:129942057 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Gm12963 within coordinates of
Rr600423 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs27492101
MGI SNP Detail
Alliance Variant		 Chr4:129942107 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Gm12963 within coordinates of
Rr600423 within coordinates of
 SNP C/G G G G G G G C G C G G G C G
rs225858948
MGI SNP Detail
Alliance Variant		 Chr4:129942165 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Gm12963 within coordinates of
Rr600423 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T G T T T T T G T T T T T T T T T T T G T G T T T G T G
rs387224329
MGI SNP Detail
Alliance Variant		 Chr4:129942317 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G A G G G G G G G G G G G A G A G G G A G A
rs387585693
MGI SNP Detail
Alliance Variant		 Chr4:129942360 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T
rs249182860
MGI SNP Detail
Alliance Variant		 Chr4:129942460 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 83 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs263275854
MGI SNP Detail
Alliance Variant		 Chr4:129942526 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 149 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27492100
MGI SNP Detail
Alliance Variant		 Chr4:129942527 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 150 bp distal
 SNP C/T C C C C C C C C C C C C C T C
rs238266965
MGI SNP Detail
Alliance Variant		 Chr4:129942685 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 308 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27492099
MGI SNP Detail
Alliance Variant		 Chr4:129942795 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 418 bp distal
 SNP A/G G G G G G G G A G G G A G A G G A A G
rs224217025
MGI SNP Detail
Alliance Variant		 Chr4:129942817 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 440 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27492098
MGI SNP Detail
Alliance Variant		 Chr4:129943086 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 709 bp distal
 SNP A/G G G G G G G A G G G G G G G G
rs579244660
MGI SNP Detail
Alliance Variant		 Chr4:129943113 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Col16a1 Splice-Site
Rr600423 736 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27492097
MGI SNP Detail
Alliance Variant		 Chr4:129943157 Col16a1 Intron
Col16a1 mRNA-UTR
Col16a1 Noncoding-Transcript-Variant
Rr600423 780 bp distal
 SNP A/C C C C C C C A C C C A C A C C A A C
rs232832584
MGI SNP Detail
Alliance Variant		 Chr4:129943179 Col16a1 Intron
Col16a1 mRNA-UTR
Col16a1 Noncoding-Transcript-Variant
Rr600423 802 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs27492096
MGI SNP Detail
Alliance Variant		 Chr4:129943231 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 854 bp distal
 SNP A/G G G G G G G G G G G G G G A G
rs214969812
MGI SNP Detail
Alliance Variant		 Chr4:129943239 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 862 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27492095
MGI SNP Detail
Alliance Variant		 Chr4:129943330 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 953 bp distal
 SNP C/T C C C T C C T C T C T T
rs32291467
MGI SNP Detail
Alliance Variant		 Chr4:129943349 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 972 bp distal
 SNP A/G G A
rs27492094
MGI SNP Detail
Alliance Variant		 Chr4:129943355 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 978 bp distal
 SNP C/T T T T T T T C T T T C C T T C T
rs32785725
MGI SNP Detail
Alliance Variant		 Chr4:129943404 Col16a1 Intron
Col16a1 mRNA-UTR
Col16a1 Noncoding-Transcript-Variant
Rr600423 1027 bp distal
 SNP C/T T C T C
rs27492093
MGI SNP Detail
Alliance Variant		 Chr4:129943547 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 1170 bp distal
 SNP G/T T T T T T T T G G T T G T G T T G G T
rs27492092
MGI SNP Detail
Alliance Variant		 Chr4:129943615 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 1238 bp distal
 SNP C/T C C C C C C C T C C C T C T C C T T C
rs246511747
MGI SNP Detail
Alliance Variant		 Chr4:129943633 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 1256 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27492091
MGI SNP Detail
Alliance Variant		 Chr4:129943655 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 1278 bp distal
 SNP C/T C C C C C C T C C C C C C C C
rs27492090
MGI SNP Detail
Alliance Variant		 Chr4:129943784 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 1407 bp distal
 SNP C/T C C C C C C C T C C T C T C C T T C
rs27492089
MGI SNP Detail
Alliance Variant		 Chr4:129943791 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 1414 bp distal
 SNP A/C/G C G G C C C C A C G C A G A C C A A C
rs27492088
MGI SNP Detail
Alliance Variant		 Chr4:129943860 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 1483 bp distal
 SNP G/T T T T T T T T G T T G T G T T G G T
rs27492087
MGI SNP Detail
Alliance Variant		 Chr4:129943897 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 1520 bp distal
Rr600424 within coordinates of
 SNP A/T T T T T T T T A T T A T A T T A A T
rs27492086
MGI SNP Detail
Alliance Variant		 Chr4:129944038 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 1661 bp distal
Rr600424 within coordinates of
 SNP A/G G G G G G G A G A G G G G G G
rs52341227
MGI SNP Detail
Alliance Variant		 Chr4:129944190 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 1813 bp distal
Rr600424 within coordinates of
 SNP A/G G G G A
rs52542650
MGI SNP Detail
Alliance Variant		 Chr4:129944336 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600423 1959 bp distal
Rr600424 within coordinates of
 SNP C/T C C C T
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Showing SNP(s) 1 - 75 of 75
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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