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Mouse SNP Summary
Symbol
Name
ID 		Rr600434
regulatory region 600434
MGI:8062566

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Showing SNP(s) 1 - 37 of 37

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27491943
MGI SNP Detail
Alliance Variant		 Chr4:129975592 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Gm70130 within coordinates of
Rr600432 within coordinates of
Rr600434 1625 bp proximal
 SNP A/G G G G G G G G A G G G A G A G G G A G
rs27491942
MGI SNP Detail
Alliance Variant		 Chr4:129975648 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Gm70130 within coordinates of
Rr600432 within coordinates of
Rr600434 1569 bp proximal
 SNP C/T T T T T T T C T T T T T T T T
rs32535953
MGI SNP Detail
Alliance Variant		 Chr4:129975692 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Gm70130 within coordinates of
Rr600432 within coordinates of
Rr600434 1525 bp proximal
 SNP C/T T C C C
rs27491941
MGI SNP Detail
Alliance Variant		 Chr4:129975708 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Gm70130 within coordinates of
Rr600432 within coordinates of
Rr600434 1509 bp proximal
 SNP C/T C C C T C T C T C C T C
rs27491940
MGI SNP Detail
Alliance Variant		 Chr4:129976076 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600433 within coordinates of
Rr600434 1141 bp proximal
 SNP C/T T T T T T T C T T C T C T T T C T
rs27491939
MGI SNP Detail
Alliance Variant		 Chr4:129976127 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600433 within coordinates of
Rr600434 1090 bp proximal
 SNP C/T C C C C C T C C C C C C
rs32705767
MGI SNP Detail
Alliance Variant		 Chr4:129976146 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600433 within coordinates of
Rr600434 1071 bp proximal
 SNP C/T T T C T T C
rs31842995
MGI SNP Detail
Alliance Variant		 Chr4:129976259 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600433 within coordinates of
Rr600434 958 bp proximal
 SNP A/G G A G G A
rs27491938
MGI SNP Detail
Alliance Variant		 Chr4:129976402 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 815 bp proximal
 SNP C/T T T T T T T C T T T T T T T T
rs32318519
MGI SNP Detail
Alliance Variant		 Chr4:129976455 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 762 bp proximal
 SNP G/T G G T G G T
rs32426310
MGI SNP Detail
Alliance Variant		 Chr4:129976461 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 756 bp proximal
 SNP C/T C C T C C T
rs49251329
MGI SNP Detail
Alliance Variant		 Chr4:129976615 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 602 bp proximal
 SNP C/T T T C
rs27491937
MGI SNP Detail
Alliance Variant		 Chr4:129976667 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 550 bp proximal
 SNP C/T C C C C C C T C T C T C C T T C
rs32892506
MGI SNP Detail
Alliance Variant		 Chr4:129976690 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 527 bp proximal
 SNP C/T C C T C C T
rs27491936
MGI SNP Detail
Alliance Variant		 Chr4:129976692 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 525 bp proximal
 SNP C/T T T T T C C T C T C T C C T
rs27491935
MGI SNP Detail
Alliance Variant		 Chr4:129976704 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 513 bp proximal
 SNP A/T A A A A A T T A T A T A A T T A
rs47707949
MGI SNP Detail
Alliance Variant		 Chr4:129976991 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 226 bp proximal
 SNP A/G A A A A G
rs27491934
MGI SNP Detail
Alliance Variant		 Chr4:129977125 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 92 bp proximal
 SNP C/T C C C C C C C T C T C C T T C
rs48982450
MGI SNP Detail
Alliance Variant		 Chr4:129977532 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 294 bp distal
 SNP C/T T T T C
rs51137458
MGI SNP Detail
Alliance Variant		 Chr4:129977537 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 299 bp distal
 SNP A/G A A A G
rs45948156
MGI SNP Detail
Alliance Variant		 Chr4:129977580 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 342 bp distal
 SNP A/G A A A G
rs222120855
MGI SNP Detail
Alliance Variant		 Chr4:129977630 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 392 bp distal
 SNP A/G A G
rs51250213
MGI SNP Detail
Alliance Variant		 Chr4:129977633 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 395 bp distal
 SNP C/T C C C T
rs27491933
MGI SNP Detail
Alliance Variant		 Chr4:129977732 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 494 bp distal
 SNP C/T C C C C C C C T C T C T T C
rs228908464
MGI SNP Detail
Alliance Variant		 Chr4:129977786 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 548 bp distal
 SNP A/G A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27491932
MGI SNP Detail
Alliance Variant		 Chr4:129978029 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 791 bp distal
 SNP A/G A A A A A G A A G A G A A G G A
rs27491931
MGI SNP Detail
Alliance Variant		 Chr4:129978494 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 1256 bp distal
Rr600435 within coordinates of
 SNP A/G G G G G G A G G G A G A G G G A G
rs27491930
MGI SNP Detail
Alliance Variant		 Chr4:129978625 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 1387 bp distal
Rr600435 within coordinates of
 SNP C/T C C C C C C C C T C T C C C T C
rs578271105
MGI SNP Detail
Alliance Variant		 Chr4:129978900 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 1662 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T C T T T T T T T T T T T
rs579029738
MGI SNP Detail
Alliance Variant		 Chr4:129978911 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 1673 bp distal
 SNP A/G A A A A A G A A A A G G G G G G G A A A G G A A A G G A A A G A G A A G G A A A A G A A A
rs582453637
MGI SNP Detail
Alliance Variant		 Chr4:129978912 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 1674 bp distal
 SNP C/T T T T T C T T T T C C C C C C C C T C C T T C C C T T T C T C T T C T T T T C T T T
rs586089265
MGI SNP Detail
Alliance Variant		 Chr4:129978913 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 1675 bp distal
 SNP A/G G G G G A G G G G A A A A A A A A G A A G G A A A G G G A G G A G G A G G G G A G G G
rs27491929
MGI SNP Detail
Alliance Variant		 Chr4:129978942 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 1704 bp distal
 SNP C/T T T T T T C T C T C T T C C T
rs27491928
MGI SNP Detail
Alliance Variant		 Chr4:129979064 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 1826 bp distal
 SNP C/T C C C C C C T C T C C C T C
rs27491927
MGI SNP Detail
Alliance Variant		 Chr4:129979114 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 1876 bp distal
 SNP C/T C C C C C C T C T C C T T C
rs51992980
MGI SNP Detail
Alliance Variant		 Chr4:129979190 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 1952 bp distal
 SNP C/T C C C T
rs47923053
MGI SNP Detail
Alliance Variant		 Chr4:129979213 Col16a1 Intron
Col16a1 Noncoding-Transcript-Variant
Rr600434 1975 bp distal
 SNP A/G A A A G
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Showing SNP(s) 1 - 37 of 37
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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