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Mouse SNP Summary
Symbol
Name
ID
Rr600448
regulatory region 600448
MGI:8062580

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Showing SNP(s) 1 - 43 of 43

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
CZECHII/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs27517915
MGI SNP Detail
Alliance Variant
Chr4:130004144 Gm40258 within coordinates of
Pef1 Intron
Rr600447 within coordinates of
Rr600448 1985 bp proximal
SNP C/T T T C C C T C C C C T C C C C C T
rs27517914
MGI SNP Detail
Alliance Variant
Chr4:130004156 Gm40258 within coordinates of
Pef1 Intron
Rr600447 within coordinates of
Rr600448 1973 bp proximal
SNP C/T C C C C C C C C C T T C C T C
rs27517913
MGI SNP Detail
Alliance Variant
Chr4:130004191 Gm40258 within coordinates of
Pef1 Intron
Rr600447 within coordinates of
Rr600448 1938 bp proximal
SNP C/T C C T T T C T T T T C C C T T C C
rs32697026
MGI SNP Detail
Alliance Variant
Chr4:130004212 Gm40258 within coordinates of
Pef1 Intron
Rr600447 within coordinates of
Rr600448 1917 bp proximal
SNP A/G G G A A A
rs231377897
MGI SNP Detail
Alliance Variant
Chr4:130004330 Gm40258 within coordinates of
Pef1 Intron
Rr600448 1799 bp proximal
SNP C/T C T
rs27517912
MGI SNP Detail
Alliance Variant
Chr4:130004368 Gm40258 within coordinates of
Pef1 Intron
Rr600448 1761 bp proximal
SNP C/T C C C C C C C C C T T C C C C
rs27517911
MGI SNP Detail
Alliance Variant
Chr4:130004404 Gm40258 within coordinates of
Pef1 Intron
Rr600448 1725 bp proximal
SNP A/G A G G G A G G G A G G G G G A
rs27517910
MGI SNP Detail
Alliance Variant
Chr4:130004411 Gm40258 within coordinates of
Pef1 Intron
Rr600448 1718 bp proximal
SNP C/T C C C C C C C C T T C C T
rs27517909
MGI SNP Detail
Alliance Variant
Chr4:130004653 Gm40258 within coordinates of
Pef1 Intron
Rr600448 1476 bp proximal
SNP A/G A G G G A G G G A A A G G A A
rs27517908
MGI SNP Detail
Alliance Variant
Chr4:130004687 Gm40258 within coordinates of
Pef1 Intron
Rr600448 1442 bp proximal
SNP G/T G T T T G T T G G G T T G G
rs27517907
MGI SNP Detail
Alliance Variant
Chr4:130004959 Gm40258 within coordinates of
Pef1 Intron
Rr600448 1170 bp proximal
SNP A/G A G G G A G G G G G G G G G G
rs27517906
MGI SNP Detail
Alliance Variant
Chr4:130004970 Gm40258 within coordinates of
Pef1 Intron
Rr600448 1159 bp proximal
SNP A/G A G G G A G G G A A A G G A A
rs27517905
MGI SNP Detail
Alliance Variant
Chr4:130005104 Gm40258 within coordinates of
Pef1 Intron
Rr600448 1025 bp proximal
SNP A/G G G G G G G G G G G G G G G A
rs27517904
MGI SNP Detail
Alliance Variant
Chr4:130005368 Gm40258 within coordinates of
Pef1 Intron
Rr600448 761 bp proximal
SNP A/G G G A A A G A A A G A A A A A G
rs27517903
MGI SNP Detail
Alliance Variant
Chr4:130005517 Gm40258 within coordinates of
Pef1 Intron
Rr600448 612 bp proximal
SNP A/G A A G G G A G G G G G G G G G G
rs27517902
MGI SNP Detail
Alliance Variant
Chr4:130005568 Gm40258 within coordinates of
Pef1 Intron
Rr600448 561 bp proximal
SNP A/G G G G G G G G G G A A G G A G
rs27517901
MGI SNP Detail
Alliance Variant
Chr4:130005639 Gm40258 within coordinates of
Pef1 Intron
Rr600448 490 bp proximal
SNP A/C A A A A A C A A C C A A C A
rs27517900
MGI SNP Detail
Alliance Variant
Chr4:130005713 Gm40258 within coordinates of
Pef1 Intron
Rr600448 416 bp proximal
SNP C/T C C C C C C C C C T C C C C T
rs27517899
MGI SNP Detail
Alliance Variant
Chr4:130005716 Gm40258 within coordinates of
Pef1 Intron
Rr600448 413 bp proximal
SNP G/T G G G G G G G G T G G G G G G
rs27517898
MGI SNP Detail
Alliance Variant
Chr4:130005740 Gm40258 within coordinates of
Pef1 Intron
Rr600448 389 bp proximal
SNP G/T G G G G G G T G G G G G G G G
rs27517897
MGI SNP Detail
Alliance Variant
Chr4:130005752 Gm40258 within coordinates of
Pef1 Intron
Rr600448 377 bp proximal
SNP G/T T T G G G T G G G T G G G G G T
rs27517896
MGI SNP Detail
Alliance Variant
Chr4:130005770 Gm40258 within coordinates of
Pef1 Intron
Rr600448 359 bp proximal
SNP C/T T T T T T T C T T C C T T C T
rs27517895
MGI SNP Detail
Alliance Variant
Chr4:130005907 Pef1 Intron
Rr600448 222 bp proximal
SNP C/G G G G G G G C G G C C G G C G
rs27517894
MGI SNP Detail
Alliance Variant
Chr4:130006019 Pef1 Intron
Rr600448 110 bp proximal
SNP C/T T T T T T T C T T C C T T C T
rs245299854
MGI SNP Detail
Alliance Variant
Chr4:130006027 Pef1 Intron
Rr600448 102 bp proximal
SNP C/T C T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
CZECHII/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs27517893
MGI SNP Detail
Alliance Variant
Chr4:130006123 Pef1 Intron
Rr600448 6 bp proximal
SNP C/T T T T T T T C T T C C T T C T
rs27517892
MGI SNP Detail
Alliance Variant
Chr4:130006135 Pef1 Intron
Rr600448 within coordinates of
SNP A/G A A A A A A A A A A A A A G A
rs6222707
MGI SNP Detail
Alliance Variant
Chr4:130006463 Pef1 Intron
Rr600448 13 bp distal
SNP A/C A A A A A A A C C A A C C A A C A
rs6222792
MGI SNP Detail
Alliance Variant
Chr4:130006504 Pef1 Intron
Rr600448 54 bp distal
SNP C/T T T T T T T T C C T T C C T T C T
rs6223310
MGI SNP Detail
Alliance Variant
Chr4:130006569 Pef1 Intron
Rr600448 119 bp distal
SNP A/G G G G G G G G G A G G A A G G A G
rs27517891
MGI SNP Detail
Alliance Variant
Chr4:130006620 Pef1 Intron
Rr600448 170 bp distal
SNP G/T G G G G G G G G G T T G G G G
rs6223812
MGI SNP Detail
Alliance Variant
Chr4:130006636 Pef1 Intron
Rr600448 186 bp distal
SNP A/G G A
rs6223905
MGI SNP Detail
Alliance Variant
Chr4:130006685 Pef1 Intron
Rr600448 235 bp distal
SNP A/G G A
rs6224386
MGI SNP Detail
Alliance Variant
Chr4:130006733 Pef1 Intron
Rr600448 283 bp distal
SNP C/T T C
rs6224421
MGI SNP Detail
Alliance Variant
Chr4:130006756 Pef1 Intron
Rr600448 306 bp distal
SNP A/G A G
rs27517890
MGI SNP Detail
Alliance Variant
Chr4:130006867 Pef1 Intron
Rr600448 417 bp distal
SNP C/T T T T T T T C T T T T T T T
rs27517889
MGI SNP Detail
Alliance Variant
Chr4:130007303 Pef1 Intron
Rr600448 853 bp distal
SNP C/T T T T T T T C T T C C T T C T
rs27517888
MGI SNP Detail
Alliance Variant
Chr4:130007343 Pef1 Intron
Rr600448 893 bp distal
SNP C/G C C G G G C G G C G C C G C G G C C C
rs27517887
MGI SNP Detail
Alliance Variant
Chr4:130007373 Pef1 Intron
Rr600448 923 bp distal
SNP C/T T T T T T T C T T T T T T T T
rs32139577
MGI SNP Detail
Alliance Variant
Chr4:130007579 Pef1 Intron
Rr600448 1129 bp distal
SNP A/G A G G G
rs27517886
MGI SNP Detail
Alliance Variant
Chr4:130007843 Pef1 Intron
Rr600448 1393 bp distal
SNP C/T C C C C C C T C C T T C C T C
rs27517885
MGI SNP Detail
Alliance Variant
Chr4:130007869 Pef1 Intron
Rr600448 1419 bp distal
SNP A/T T T T T T T T T T T T T T T A
rs32527719
MGI SNP Detail
Alliance Variant
Chr4:130007973 Pef1 Intron
Rr600448 1523 bp distal
SNP A/G A G G G G A
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Showing SNP(s) 1 - 43 of 43

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

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