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Mouse SNP Summary
Symbol
Name
ID 		Rr602213
regulatory region 602213
MGI:8064345

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226289318
MGI SNP Detail		 Chr4:135671804 Rr602213 1966 bp proximal
 SNP C/T C C C T T C T T T T T T C C T T T T T C T T C C T T T C C T T C T C T T T C T T T T T T T C T T C T T T T
rs252164964
MGI SNP Detail		 Chr4:135671805 Rr602213 1965 bp proximal
 SNP A/G A A A G G A G G G G G G A A G G G G G G G G A A G G G A A G G A G A G G G A G G G G G G G A G G G G G G G
rs32551030
MGI SNP Detail		 Chr4:135671836 Rr602213 1934 bp proximal
 SNP C/T T C C C
rs233905094
MGI SNP Detail		 Chr4:135671845 Rr602213 1925 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs254549238
MGI SNP Detail		 Chr4:135671889 Rr602213 1881 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215071504
MGI SNP Detail		 Chr4:135671922 Rr602213 1848 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32062112
MGI SNP Detail		 Chr4:135671957 Rr602213 1813 bp proximal
 SNP C/T C T T C C
rs32134661
MGI SNP Detail		 Chr4:135671963 Rr602213 1807 bp proximal
 SNP A/C A C C
rs214462864
MGI SNP Detail		 Chr4:135672083 Rr602213 1687 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs234782050
MGI SNP Detail		 Chr4:135672096 Rr602213 1674 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs262286530
MGI SNP Detail		 Chr4:135672241 Rr602213 1529 bp proximal
 SNP A A A
rs226008601
MGI SNP Detail		 Chr4:135672259 Rr602213 1511 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs243275726
MGI SNP Detail		 Chr4:135672284 Rr602213 1486 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253085546
MGI SNP Detail		 Chr4:135672397 Rr602213 1373 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs579841643
MGI SNP Detail		 Chr4:135672445 Rr602213 1325 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222149849
MGI SNP Detail		 Chr4:135672480 Rr602213 1290 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239263580
MGI SNP Detail		 Chr4:135672495 Rr602213 1275 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258718445
MGI SNP Detail		 Chr4:135672540 Rr602213 1230 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51870102
MGI SNP Detail		 Chr4:135672744 Rr602213 1026 bp proximal
 SNP A/G A G G
rs240847128
MGI SNP Detail		 Chr4:135672810 Rr602213 960 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs264778993
MGI SNP Detail		 Chr4:135672877 Rr602213 893 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs232867735
MGI SNP Detail		 Chr4:135672878 Rr602213 892 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259923949
MGI SNP Detail		 Chr4:135672901 Rr602213 869 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257049304
MGI SNP Detail		 Chr4:135672917 Rr602213 853 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs227484379
MGI SNP Detail		 Chr4:135672922 Rr602213 848 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243785806
MGI SNP Detail		 Chr4:135672938 Rr602213 832 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27620083
MGI SNP Detail		 Chr4:135673272 Rr602211 within coordinates of
Rr602213 498 bp proximal
 SNP C/T C T T T T T T C C T T C T
rs240457606
MGI SNP Detail		 Chr4:135673498 Gm69275 within coordinates of
Rr602211 within coordinates of
Rr602213 272 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs253058532
MGI SNP Detail		 Chr4:135673551 Gm69275 within coordinates of
Rr602211 within coordinates of
Rr602213 219 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A
rs216154649
MGI SNP Detail		 Chr4:135673623 Cpgi15085 within coordinates of
Gm69275 within coordinates of
Rr602211 within coordinates of
Rr602213 147 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs231049051
MGI SNP Detail		 Chr4:135673655 Cpgi15085 within coordinates of
Gm69275 within coordinates of
Rr602211 within coordinates of
Rr602213 115 bp proximal
 SNP G G G
rs249062210
MGI SNP Detail		 Chr4:135673714 Cpgi15085 within coordinates of
Rr602212 within coordinates of
Rr602213 56 bp proximal
 SNP T T T
rs212845629
MGI SNP Detail		 Chr4:135673724 Cpgi15085 within coordinates of
Rr602212 within coordinates of
Rr602213 46 bp proximal
 SNP A A A
rs245471878
MGI SNP Detail		 Chr4:135673748 Cpgi15085 within coordinates of
Rr602212 within coordinates of
Rr602213 22 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs255925483
MGI SNP Detail
Alliance Variant		 Chr4:135673849 Cpgi15085 within coordinates of
Hmgcl Coding-NonSynonymous
Hmgcl mRNA-UTR
Hmgcl Noncoding-Transcript-Variant
Hmgcl Splice-Site
Rr602213 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225800534
MGI SNP Detail
Alliance Variant		 Chr4:135673865 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27620082
MGI SNP Detail
Alliance Variant		 Chr4:135673899 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP C/T C C C C T C C T C C C T T
rs257006410
MGI SNP Detail
Alliance Variant		 Chr4:135673914 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs227448611
MGI SNP Detail
Alliance Variant		 Chr4:135673947 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs237475934
MGI SNP Detail
Alliance Variant		 Chr4:135674120 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27620081
MGI SNP Detail
Alliance Variant		 Chr4:135674184 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP C/T C C T C C T C C T C C T C T T
rs227563217
MGI SNP Detail
Alliance Variant		 Chr4:135674200 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs254199829
MGI SNP Detail
Alliance Variant		 Chr4:135674204 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218098000
MGI SNP Detail
Alliance Variant		 Chr4:135674303 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235077008
MGI SNP Detail
Alliance Variant		 Chr4:135674309 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs246664442
MGI SNP Detail
Alliance Variant		 Chr4:135674362 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216115643
MGI SNP Detail
Alliance Variant		 Chr4:135674375 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231995070
MGI SNP Detail
Alliance Variant		 Chr4:135674449 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs27620080
MGI SNP Detail
Alliance Variant		 Chr4:135674493 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP G/T T T G G G G G G G T G G T G
rs212615103
MGI SNP Detail
Alliance Variant		 Chr4:135674529 Cpgi15085 within coordinates of
Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583246827
MGI SNP Detail
Alliance Variant		 Chr4:135674629 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs586567600
MGI SNP Detail
Alliance Variant		 Chr4:135674642 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235745067
MGI SNP Detail
Alliance Variant		 Chr4:135674690 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs583578637
MGI SNP Detail
Alliance Variant		 Chr4:135674730 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585698734
MGI SNP Detail
Alliance Variant		 Chr4:135674748 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 2 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs586985890
MGI SNP Detail
Alliance Variant		 Chr4:135674763 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 17 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263997945
MGI SNP Detail
Alliance Variant		 Chr4:135674766 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 20 bp distal
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs225409936
MGI SNP Detail
Alliance Variant		 Chr4:135674786 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 40 bp distal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs581366840
MGI SNP Detail
Alliance Variant		 Chr4:135674813 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 67 bp distal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs584868658
MGI SNP Detail
Alliance Variant		 Chr4:135674834 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 88 bp distal
 SNP A/C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C
rs578757724
MGI SNP Detail
Alliance Variant		 Chr4:135674843 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 97 bp distal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs582219997
MGI SNP Detail
Alliance Variant		 Chr4:135674855 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 109 bp distal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs584123680
MGI SNP Detail
Alliance Variant		 Chr4:135674856 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 110 bp distal
 SNP A/C C C C C C C C A C C C C C A C A C C C
rs578414482
MGI SNP Detail
Alliance Variant		 Chr4:135674860 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 114 bp distal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs581665041
MGI SNP Detail
Alliance Variant		 Chr4:135674862 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 116 bp distal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs586336786
MGI SNP Detail
Alliance Variant		 Chr4:135674864 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 118 bp distal
 SNP A/G A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs580288717
MGI SNP Detail
Alliance Variant		 Chr4:135674865 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 119 bp distal
 SNP A/T T T A T T T T T T A T T T T T A T T A T T T A T T T T T T T T T T T T T A T T T T T T
rs582602145
MGI SNP Detail
Alliance Variant		 Chr4:135674867 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 121 bp distal
 SNP A/G G G A G G G G G G A G G G G G A G G A G G G A A G G A G G G G A G G G G G G G A G G G G G G
rs241294526
MGI SNP Detail
Alliance Variant		 Chr4:135674877 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 131 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs251018009
MGI SNP Detail
Alliance Variant		 Chr4:135674916 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 170 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs221232718
MGI SNP Detail
Alliance Variant		 Chr4:135674917 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 171 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237287936
MGI SNP Detail
Alliance Variant		 Chr4:135674954 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 208 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262704126
MGI SNP Detail
Alliance Variant		 Chr4:135674956 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 210 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27620079
MGI SNP Detail
Alliance Variant		 Chr4:135674958 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 212 bp distal
 SNP A/G G A A A A A G G A A A A
rs242132347
MGI SNP Detail
Alliance Variant		 Chr4:135674983 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 237 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265929741
MGI SNP Detail
Alliance Variant		 Chr4:135674988 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 242 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229283524
MGI SNP Detail
Alliance Variant		 Chr4:135674991 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 245 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs586037512
MGI SNP Detail
Alliance Variant		 Chr4:135675016 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 270 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246513015
MGI SNP Detail
Alliance Variant		 Chr4:135675130 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 384 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215990557
MGI SNP Detail
Alliance Variant		 Chr4:135675231 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 485 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs225925456
MGI SNP Detail
Alliance Variant		 Chr4:135675298 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 552 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs245897299
MGI SNP Detail
Alliance Variant		 Chr4:135675413 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 667 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32747774
MGI SNP Detail
Alliance Variant		 Chr4:135675415 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 669 bp distal
 SNP C/T T C C C
rs237491351
MGI SNP Detail
Alliance Variant		 Chr4:135675435 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 689 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs31878244
MGI SNP Detail
Alliance Variant		 Chr4:135675502 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 756 bp distal
 SNP A/T A T T T
rs219627290
MGI SNP Detail
Alliance Variant		 Chr4:135675507 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 761 bp distal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs50961972
MGI SNP Detail
Alliance Variant		 Chr4:135675529 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 783 bp distal
 SNP A/G G A A G G
rs250893279
MGI SNP Detail
Alliance Variant		 Chr4:135675602 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 856 bp distal
Rr602214 within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs221198363
MGI SNP Detail
Alliance Variant		 Chr4:135675604 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 858 bp distal
Rr602214 within coordinates of
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs46585363
MGI SNP Detail
Alliance Variant		 Chr4:135675612 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 866 bp distal
Rr602214 within coordinates of
 SNP A/G G A A
rs262340988
MGI SNP Detail
Alliance Variant		 Chr4:135675619 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 873 bp distal
Rr602214 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs220216453
MGI SNP Detail
Alliance Variant		 Chr4:135675624 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 878 bp distal
Rr602214 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs244928852
MGI SNP Detail
Alliance Variant		 Chr4:135675712 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 966 bp distal
Rr602214 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263961232
MGI SNP Detail
Alliance Variant		 Chr4:135675726 Hmgcl Intron
Hmgcl Noncoding-Transcript-Variant
Rr602213 980 bp distal
Rr602214 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223404280
MGI SNP Detail
Alliance Variant		 Chr4:135675737 Hmgcl Intron
Hmgcl mRNA-UTR
Hmgcl Noncoding-Transcript-Variant
Rr602213 991 bp distal
Rr602214 within coordinates of
Tssr39661 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240520563
MGI SNP Detail
Alliance Variant		 Chr4:135675743 Hmgcl Intron
Hmgcl mRNA-UTR
Hmgcl Noncoding-Transcript-Variant
Rr602213 997 bp distal
Rr602214 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259963138
MGI SNP Detail
Alliance Variant		 Chr4:135675775 Hmgcl Intron
Hmgcl mRNA-UTR
Hmgcl Noncoding-Transcript-Variant
Rr602213 1029 bp distal
Rr602214 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225883936
MGI SNP Detail
Alliance Variant		 Chr4:135675789 Hmgcl Intron
Hmgcl mRNA-UTR
Hmgcl Noncoding-Transcript-Variant
Rr602213 1043 bp distal
Rr602214 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs251665694
MGI SNP Detail
Alliance Variant		 Chr4:135675816 Hmgcl Intron
Hmgcl mRNA-UTR
Hmgcl Noncoding-Transcript-Variant
Rr602213 1070 bp distal
Rr602214 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264710339
MGI SNP Detail
Alliance Variant		 Chr4:135675854 Hmgcl Intron
Hmgcl mRNA-UTR
Hmgcl Noncoding-Transcript-Variant
Rr602213 1108 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 100 of 130
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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