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Mouse SNP Summary
Symbol
Name
ID 		Rr603539
regulatory region 603539
MGI:8065671

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Showing SNP(s) 1 - 42 of 42

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs48914611
MGI SNP Detail
Alliance Variant		 Chr4:140473410 Padi4 mRNA-UTR
Rr603539 1794 bp proximal
 SNP A/G G A
rs27592243
MGI SNP Detail
Alliance Variant		 Chr4:140473601 Padi4 Coding-NonSynonymous
Rr603539 1603 bp proximal
 SNP C/T C T C C C T C
rs27592242
MGI SNP Detail
Alliance Variant		 Chr4:140473722 Padi4 Intron
Rr603539 1482 bp proximal
 SNP C/T C C C C T C C C C C T C C
rs27592241
MGI SNP Detail
Alliance Variant		 Chr4:140473741 Padi4 Intron
Rr603539 1463 bp proximal
 SNP A/G A A G G A G
rs27592240
MGI SNP Detail
Alliance Variant		 Chr4:140474106 Padi4 Intron
Rr603539 1098 bp proximal
 SNP C/T C T C C T C T C C C T C C
rs27592239
MGI SNP Detail
Alliance Variant		 Chr4:140474569 Padi4 Intron
Rr603539 635 bp proximal
 SNP C/T T T T C T T C C T T
rs27592238
MGI SNP Detail
Alliance Variant		 Chr4:140474584 Padi4 Intron
Rr603539 620 bp proximal
 SNP C/G G G G G G G G C G G C G G G
rs32713168
MGI SNP Detail
Alliance Variant		 Chr4:140474995 Padi4 Intron
Rr603539 209 bp proximal
 SNP C/T T T C
rs27592237
MGI SNP Detail
Alliance Variant		 Chr4:140475056 Padi4 Intron
Rr603539 148 bp proximal
 SNP C/T T T T T T T T T C T T C T T T
rs27592236
MGI SNP Detail
Alliance Variant		 Chr4:140475067 Padi4 Intron
Rr603539 137 bp proximal
 SNP C/T T T T T C T T T C T C T T
rs50961369
MGI SNP Detail
Alliance Variant		 Chr4:140475176 Padi4 Intron
Rr603538 within coordinates of
Rr603539 28 bp proximal
 SNP C C
rs27592235
MGI SNP Detail
Alliance Variant		 Chr4:140475212 Padi4 Intron
Rr603538 within coordinates of
Rr603539 within coordinates of
 SNP A/G G G G G G G G G G A G G G G
rs27592234
MGI SNP Detail
Alliance Variant		 Chr4:140475228 Padi4 Intron
Rr603538 within coordinates of
Rr603539 3 bp distal
 SNP A/C C C A A C C A C C C C A A
rs27592233
MGI SNP Detail
Alliance Variant		 Chr4:140475234 Padi4 Intron
Rr603538 within coordinates of
Rr603539 9 bp distal
 SNP A/G G G G G G G G A G G G G
rs27592232
MGI SNP Detail
Alliance Variant		 Chr4:140475249 Padi4 Intron
Rr603538 within coordinates of
Rr603539 24 bp distal
 SNP A/G A A A A G A G A G A A
rs27592231
MGI SNP Detail
Alliance Variant		 Chr4:140475286 Padi4 Intron
Rr603538 within coordinates of
Rr603539 61 bp distal
 SNP G/T T T T T T T G T G T T
rs50689397
MGI SNP Detail
Alliance Variant		 Chr4:140475288 Padi4 Intron
Rr603538 within coordinates of
Rr603539 63 bp distal
 SNP T T T
rs48526395
MGI SNP Detail
Alliance Variant		 Chr4:140475292 Padi4 Intron
Rr603538 within coordinates of
Rr603539 67 bp distal
 SNP A A A
rs27592230
MGI SNP Detail
Alliance Variant		 Chr4:140475382 Padi4 Intron
Rr603538 within coordinates of
Rr603539 157 bp distal
 SNP C/T T T C T T T C T T T C T C T T
rs27592229
MGI SNP Detail
Alliance Variant		 Chr4:140475446 Gm69576 within coordinates of
Padi4 Coding-NonSynonymous
Rr603538 within coordinates of
Rr603539 221 bp distal
 SNP A/G A A G A A A G A A A A G A A
rs50248564
MGI SNP Detail
Alliance Variant		 Chr4:140475466 Gm69576 within coordinates of
Padi4 Coding-Synonymous
Rr603539 241 bp distal
 SNP A/G G A G
rs46430899
MGI SNP Detail
Alliance Variant		 Chr4:140475487 Gm69576 within coordinates of
Padi4 Coding-Synonymous
Rr603539 262 bp distal
 SNP C/T C T C
rs47323036
MGI SNP Detail
Alliance Variant		 Chr4:140475721 Gm69576 within coordinates of
Padi4 Intron
Rr603539 496 bp distal
 SNP C/T C T C
rs27592228
MGI SNP Detail
Alliance Variant		 Chr4:140475795 Gm69576 within coordinates of
Padi4 Coding-Synonymous
Rr603539 570 bp distal
 SNP A/G G G A G G G A G A G A A A G G
rs49702065
MGI SNP Detail
Alliance Variant		 Chr4:140475936 Gm69576 within coordinates of
Padi4 Intron
Rr603539 711 bp distal
 SNP C/T C T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27592227
MGI SNP Detail
Alliance Variant		 Chr4:140476030 Gm69576 within coordinates of
Padi4 Intron
Rr603539 805 bp distal
 SNP C/T C C C C C C C C C C C T C C C
rs27592226
MGI SNP Detail
Alliance Variant		 Chr4:140476036 Gm69576 within coordinates of
Padi4 Intron
Rr603539 811 bp distal
 SNP C/T C C T C C C T T T C C C T C T C C
rs27592225
MGI SNP Detail
Alliance Variant		 Chr4:140476063 Gm69576 within coordinates of
Padi4 Intron
Rr603539 838 bp distal
 SNP G/T G G G G G G G G T G G G G
rs27592224
MGI SNP Detail
Alliance Variant		 Chr4:140476117 Gm69576 within coordinates of
Padi4 Intron
Rr603539 892 bp distal
 SNP A/C A A C A A A C C C A A A C A C A A
rs27592223
MGI SNP Detail
Alliance Variant		 Chr4:140476193 Gm69576 within coordinates of
Padi4 Intron
Rr603539 968 bp distal
 SNP A/G G G A G G G A A A G G G A G A G G
rs32360547
MGI SNP Detail
Alliance Variant		 Chr4:140476207 Gm69576 within coordinates of
Padi4 Intron
Rr603539 982 bp distal
 SNP A/C C A C
rs27592222
MGI SNP Detail
Alliance Variant		 Chr4:140476258 Gm69576 within coordinates of
Padi4 Intron
Rr603539 1033 bp distal
 SNP G/T G G T G G G T G G G T G T G G
rs27592221
MGI SNP Detail
Alliance Variant		 Chr4:140476260 Gm69576 within coordinates of
Padi4 Intron
Rr603539 1035 bp distal
 SNP C/T C C C C C C C C T C C C C
rs27592220
MGI SNP Detail
Alliance Variant		 Chr4:140476372 Gm69576 within coordinates of
Padi4 Intron
Rr603539 1147 bp distal
 SNP A/G G G A G G G A G G G G G A G G
rs32019629
MGI SNP Detail
Alliance Variant		 Chr4:140476601 Gm69576 within coordinates of
Padi4 Intron
Rr603539 1376 bp distal
 SNP C/T T C
rs52504165
MGI SNP Detail
Alliance Variant		 Chr4:140476648 Gm69576 within coordinates of
Padi4 Intron
Rr603539 1423 bp distal
 SNP C/T C T
rs52428342
MGI SNP Detail
Alliance Variant		 Chr4:140476650 Gm69576 within coordinates of
Padi4 Intron
Rr603539 1425 bp distal
 SNP C/T C T
rs46239845
MGI SNP Detail
Alliance Variant		 Chr4:140477068 Gm69576 within coordinates of
Padi4 Intron
Rr603539 1843 bp distal
 SNP A/G A G
rs46712619
MGI SNP Detail
Alliance Variant		 Chr4:140477082 Gm69576 within coordinates of
Padi4 Intron
Rr603539 1857 bp distal
 SNP C/T T C
rs45661895
MGI SNP Detail
Alliance Variant		 Chr4:140477108 Gm69576 within coordinates of
Padi4 Intron
Rr603539 1883 bp distal
 SNP A/G A G
rs50393724
MGI SNP Detail
Alliance Variant		 Chr4:140477141 Gm69576 within coordinates of
Padi4 Intron
Rr603539 1916 bp distal
 SNP A/G A G
rs51755794
MGI SNP Detail
Alliance Variant		 Chr4:140477145 Gm69576 within coordinates of
Padi4 Intron
Rr603539 1920 bp distal
 SNP A/G A G
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Showing SNP(s) 1 - 42 of 42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory