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Mouse SNP Summary
Symbol
Name
ID
Rr608326
regulatory region 608326
MGI:8070458

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32017291
MGI SNP Detail
Chr5:24656587 Cpgi15603 within coordinates of
Gm10472 within coordinates of
Rr608326 1975 bp proximal
SNP C/T T T T T T T C C T C C T C C T C
rs217450479
MGI SNP Detail
Chr5:24656610 Cpgi15603 within coordinates of
Gm10472 within coordinates of
Rr608326 1952 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs236473133
MGI SNP Detail
Chr5:24656700 Cpgi15603 within coordinates of
Gm10472 within coordinates of
Rr608324 within coordinates of
Rr608326 1862 bp proximal
Tssr50327 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs252171336
MGI SNP Detail
Chr5:24656722 Cpgi15603 within coordinates of
Rr608324 within coordinates of
Rr608326 1840 bp proximal
Tssr50327 within coordinates of
SNP A/C/T T T T T T T T T T T T T T T T T T T T C T T C C C T T C T T T T T C T T T C T T C T T T T T T T A T T C T
rs218352959
MGI SNP Detail
Chr5:24656723 Cpgi15603 within coordinates of
Rr608324 within coordinates of
Rr608326 1839 bp proximal
Tssr50327 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G G G T T G T T T T T G T T T G T T G T T T T T T T G T T G T
rs581111341
MGI SNP Detail
Chr5:24656924 Cpgi15603 within coordinates of
Rr608324 within coordinates of
Rr608326 1638 bp proximal
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs254526470
MGI SNP Detail
Chr5:24656967 Cpgi15603 within coordinates of
Rr608324 within coordinates of
Rr608326 1595 bp proximal
Tssr45426 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226813700
MGI SNP Detail
Alliance Variant
Chr5:24657228 Agap3 Coding-Synonymous
Cpgi15603 within coordinates of
Rr608326 1334 bp proximal
SNP C/T C C C C C C C C C C C C C C T C C C C C C C C C T C C C C C C C C C
rs584644085
MGI SNP Detail
Alliance Variant
Chr5:24657291 Agap3 Coding-Synonymous
Cpgi15603 within coordinates of
Rr608326 1271 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C
rs247724994
MGI SNP Detail
Alliance Variant
Chr5:24657459 Agap3 Coding-Synonymous
Agap3 Noncoding-Transcript-Variant
Cpgi15603 within coordinates of
Rr608326 1103 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263565261
MGI SNP Detail
Alliance Variant
Chr5:24657595 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Cpgi15603 within coordinates of
Rr608326 967 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230003654
MGI SNP Detail
Alliance Variant
Chr5:24657625 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Cpgi15603 within coordinates of
Rr608326 937 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238308436
MGI SNP Detail
Alliance Variant
Chr5:24657796 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Cpgi15603 within coordinates of
Rr608326 766 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs253696914
MGI SNP Detail
Alliance Variant
Chr5:24657943 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Cpgi15603 within coordinates of
Rr608326 619 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs224143664
MGI SNP Detail
Alliance Variant
Chr5:24657961 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Cpgi15603 within coordinates of
Rr608326 601 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246382898
MGI SNP Detail
Alliance Variant
Chr5:24657989 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Cpgi15603 within coordinates of
Rr608326 573 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G A G G G G G A A A G G G G G G G G G G G A G
rs33274090
MGI SNP Detail
Alliance Variant
Chr5:24658196 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Cpgi15603 within coordinates of
Rr608326 366 bp proximal
SNP C/G C C G
rs231369828
MGI SNP Detail
Alliance Variant
Chr5:24658210 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Cpgi15603 within coordinates of
Rr608326 352 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs257676810
MGI SNP Detail
Alliance Variant
Chr5:24658226 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Cpgi15603 within coordinates of
Rr608326 336 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217302523
MGI SNP Detail
Alliance Variant
Chr5:24658246 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Cpgi15603 within coordinates of
Rr608326 316 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T
rs238428744
MGI SNP Detail
Alliance Variant
Chr5:24658251 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Cpgi15603 within coordinates of
Rr608326 311 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs51983238
MGI SNP Detail
Alliance Variant
Chr5:24658345 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 217 bp proximal
SNP C/T T C
rs212218487
MGI SNP Detail
Alliance Variant
Chr5:24658584 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230826419
MGI SNP Detail
Alliance Variant
Chr5:24658637 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 54 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs254620683
MGI SNP Detail
Alliance Variant
Chr5:24658660 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 77 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227200799
MGI SNP Detail
Alliance Variant
Chr5:24658887 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 304 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A
rs237964080
MGI SNP Detail
Alliance Variant
Chr5:24658917 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 334 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263335502
MGI SNP Detail
Alliance Variant
Chr5:24658928 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 345 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229983810
MGI SNP Detail
Alliance Variant
Chr5:24658954 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 371 bp distal
SNP A/G G A
rs238247068
MGI SNP Detail
Alliance Variant
Chr5:24658964 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 381 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs253813159
MGI SNP Detail
Alliance Variant
Chr5:24658973 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 390 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218568736
MGI SNP Detail
Alliance Variant
Chr5:24659049 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 466 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs248586038
MGI SNP Detail
Alliance Variant
Chr5:24659056 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 473 bp distal
SNP A/G A G
rs264313005
MGI SNP Detail
Alliance Variant
Chr5:24659058 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 475 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231681393
MGI SNP Detail
Alliance Variant
Chr5:24659169 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 586 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs252855607
MGI SNP Detail
Alliance Variant
Chr5:24659185 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 602 bp distal
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs265809243
MGI SNP Detail
Alliance Variant
Chr5:24659190 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 607 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs578638509
MGI SNP Detail
Alliance Variant
Chr5:24659201 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 618 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs582040788
MGI SNP Detail
Alliance Variant
Chr5:24659256 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 673 bp distal
SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs225778971
MGI SNP Detail
Alliance Variant
Chr5:24659290 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 707 bp distal
SNP A/T T A
rs230535928
MGI SNP Detail
Alliance Variant
Chr5:24659297 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 714 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246093485
MGI SNP Detail
Alliance Variant
Chr5:24659389 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 806 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33093226
MGI SNP Detail
Alliance Variant
Chr5:24659424 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 841 bp distal
SNP A/G G A
rs231008093
MGI SNP Detail
Alliance Variant
Chr5:24659465 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 882 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240075953
MGI SNP Detail
Alliance Variant
Chr5:24659466 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 883 bp distal
SNP C/T T C
rs29629759
MGI SNP Detail
Alliance Variant
Chr5:24659520 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 937 bp distal
SNP C/T T C C T
rs219538356
MGI SNP Detail
Alliance Variant
Chr5:24659628 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1045 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs240058048
MGI SNP Detail
Alliance Variant
Chr5:24659634 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1051 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259576638
MGI SNP Detail
Alliance Variant
Chr5:24659745 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1162 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222055997
MGI SNP Detail
Alliance Variant
Chr5:24659793 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1210 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29529678
MGI SNP Detail
Alliance Variant
Chr5:24659811 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1228 bp distal
SNP A/G G G A
rs248159587
MGI SNP Detail
Alliance Variant
Chr5:24659888 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1305 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs218508934
MGI SNP Detail
Alliance Variant
Chr5:24659889 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1306 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240717810
MGI SNP Detail
Alliance Variant
Chr5:24659913 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1330 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47480773
MGI SNP Detail
Alliance Variant
Chr5:24659938 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1355 bp distal
SNP C/T C T
rs224023871
MGI SNP Detail
Alliance Variant
Chr5:24659951 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1368 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248502293
MGI SNP Detail
Alliance Variant
Chr5:24660010 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1427 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs262190817
MGI SNP Detail
Alliance Variant
Chr5:24660107 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1524 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226269781
MGI SNP Detail
Alliance Variant
Chr5:24660168 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1585 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240055539
MGI SNP Detail
Alliance Variant
Chr5:24660236 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1653 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs224447473
MGI SNP Detail
Alliance Variant
Chr5:24660245 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1662 bp distal
SNP A/G G A
rs225234932
MGI SNP Detail
Alliance Variant
Chr5:24660335 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1752 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254229786
MGI SNP Detail
Alliance Variant
Chr5:24660382 Agap3 Intron
Agap3 Noncoding-Transcript-Variant
Rr608326 1799 bp distal
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
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Showing SNP(s) 1 - 63 of 63

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory