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Mouse SNP Summary
Symbol
Name
ID
Rr608559
regulatory region 608559
MGI:8070691

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs48134879
MGI SNP Detail
Alliance Variant
Chr5:25901021 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1937 bp proximal
Xrcc2 Intron
Xrcc2 mRNA-UTR
SNP A/G G G G G G G G G G A G G G
rs252348107
MGI SNP Detail
Alliance Variant
Chr5:25901072 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1886 bp proximal
Xrcc2 Intron
Xrcc2 mRNA-UTR
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs219782932
MGI SNP Detail
Alliance Variant
Chr5:25901109 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1849 bp proximal
Xrcc2 Intron
Xrcc2 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29581394
MGI SNP Detail
Alliance Variant
Chr5:25901128 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1830 bp proximal
Xrcc2 Intron
Xrcc2 mRNA-UTR
SNP C/T T T T C C T
rs263089565
MGI SNP Detail
Alliance Variant
Chr5:25901212 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1746 bp proximal
Xrcc2 Intron
Xrcc2 Splice-Site
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A G G G G A G G G G G G A G G G G G G G G G G G G
rs29565573
MGI SNP Detail
Alliance Variant
Chr5:25901244 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1714 bp proximal
Xrcc2 Intron
SNP G/T G G G G T
rs578833046
MGI SNP Detail
Alliance Variant
Chr5:25901253 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1705 bp proximal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs29539701
MGI SNP Detail
Alliance Variant
Chr5:25901286 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1672 bp proximal
Xrcc2 Intron
SNP A/G A A A A G G A
rs250713304
MGI SNP Detail
Alliance Variant
Chr5:25901318 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1640 bp proximal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs29550743
MGI SNP Detail
Alliance Variant
Chr5:25901379 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1579 bp proximal
Xrcc2 Intron
SNP A/C A A A C C A
rs29775418
MGI SNP Detail
Alliance Variant
Chr5:25901429 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1529 bp proximal
Xrcc2 Intron
SNP C/T C C C T T C
rs33516856
MGI SNP Detail
Alliance Variant
Chr5:25901454 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1504 bp proximal
Xrcc2 Intron
SNP C/T T T T C C T
rs256199255
MGI SNP Detail
Alliance Variant
Chr5:25901550 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1408 bp proximal
Xrcc2 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs225118827
MGI SNP Detail
Alliance Variant
Chr5:25901563 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1395 bp proximal
Xrcc2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs245968091
MGI SNP Detail
Alliance Variant
Chr5:25901707 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1251 bp proximal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265485061
MGI SNP Detail
Alliance Variant
Chr5:25901800 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1158 bp proximal
Xrcc2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs233848128
MGI SNP Detail
Alliance Variant
Chr5:25901823 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1135 bp proximal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259301675
MGI SNP Detail
Alliance Variant
Chr5:25901837 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1121 bp proximal
Xrcc2 Intron
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs33268700
MGI SNP Detail
Alliance Variant
Chr5:25901876 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1082 bp proximal
Xrcc2 Intron
SNP A/G G G G G A A G
rs33612427
MGI SNP Detail
Alliance Variant
Chr5:25901918 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1040 bp proximal
Xrcc2 Intron
SNP C/T C C C C C C C C C T C C T C T C C C T
rs245860886
MGI SNP Detail
Alliance Variant
Chr5:25901953 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1005 bp proximal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33680227
MGI SNP Detail
Alliance Variant
Chr5:25902028 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 930 bp proximal
Xrcc2 Intron
SNP C/T C C C C T T C
rs235020802
MGI SNP Detail
Alliance Variant
Chr5:25902083 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 875 bp proximal
Xrcc2 Intron
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C C G G G G C G G G G G G C G G G G G G G G G G G G
rs259010928
MGI SNP Detail
Alliance Variant
Chr5:25902094 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 864 bp proximal
Xrcc2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs584422248
MGI SNP Detail
Alliance Variant
Chr5:25902153 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 805 bp proximal
Xrcc2 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227675335
MGI SNP Detail
Alliance Variant
Chr5:25902315 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 643 bp proximal
Xrcc2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239862858
MGI SNP Detail
Alliance Variant
Chr5:25902316 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 642 bp proximal
Xrcc2 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263638141
MGI SNP Detail
Alliance Variant
Chr5:25902319 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 639 bp proximal
Xrcc2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218359227
MGI SNP Detail
Alliance Variant
Chr5:25902326 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 632 bp proximal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235709234
MGI SNP Detail
Alliance Variant
Chr5:25902332 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 626 bp proximal
Xrcc2 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A A C C C C A C C C C C C A C C C C C C C C C C C C
rs256003253
MGI SNP Detail
Alliance Variant
Chr5:25902355 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 603 bp proximal
Xrcc2 Intron
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs219280920
MGI SNP Detail
Alliance Variant
Chr5:25902360 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 598 bp proximal
Xrcc2 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs50107867
MGI SNP Detail
Alliance Variant
Chr5:25902388 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 570 bp proximal
Xrcc2 Intron
SNP C/T T T T T T T C T T C C T T C T
rs263112368
MGI SNP Detail
Alliance Variant
Chr5:25902389 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 569 bp proximal
Xrcc2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs234998006
MGI SNP Detail
Alliance Variant
Chr5:25902474 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 484 bp proximal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T T C C C T C C C C C C T C C C C C C C T C C C C
rs253870334
MGI SNP Detail
Alliance Variant
Chr5:25902544 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 414 bp proximal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs578371360
MGI SNP Detail
Alliance Variant
Chr5:25902571 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 387 bp proximal
Xrcc2 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs29619002
MGI SNP Detail
Alliance Variant
Chr5:25902643 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 315 bp proximal
Xrcc2 Intron
SNP A/C A A A A C C A
rs3160575
MGI SNP Detail
Alliance Variant
Chr5:25902655 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 303 bp proximal
Xrcc2 Intron
SNP C/T T T C C C
rs586407826
MGI SNP Detail
Alliance Variant
Chr5:25902728 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 230 bp proximal
Xrcc2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245890349
MGI SNP Detail
Alliance Variant
Chr5:25902783 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 175 bp proximal
Xrcc2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213775125
MGI SNP Detail
Alliance Variant
Chr5:25902789 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 169 bp proximal
Xrcc2 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs234952010
MGI SNP Detail
Alliance Variant
Chr5:25902843 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 115 bp proximal
Xrcc2 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs48383212
MGI SNP Detail
Alliance Variant
Chr5:25902881 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 77 bp proximal
Xrcc2 Intron
SNP A/G A A A A A A G A A A A A A A A
rs219588234
MGI SNP Detail
Alliance Variant
Chr5:25902964 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 within coordinates of
Xrcc2 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs242576954
MGI SNP Detail
Alliance Variant
Chr5:25902988 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 within coordinates of
Xrcc2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs256636828
MGI SNP Detail
Alliance Variant
Chr5:25903007 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 within coordinates of
Xrcc2 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs51018652
MGI SNP Detail
Alliance Variant
Chr5:25903080 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 within coordinates of
Xrcc2 Intron
SNP A/G A A A A A A G A A G G A A G A
rs229609701
MGI SNP Detail
Alliance Variant
Chr5:25903103 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 within coordinates of
Xrcc2 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs48088152
MGI SNP Detail
Alliance Variant
Chr5:25903112 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 within coordinates of
Xrcc2 Intron
SNP C/T C C C C C C C C C T T C C T C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219221636
MGI SNP Detail
Alliance Variant
Chr5:25903113 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 within coordinates of
Xrcc2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G A
rs246071806
MGI SNP Detail
Alliance Variant
Chr5:25903114 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 within coordinates of
Xrcc2 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A A C C C C A C C C C C C A C C C C C C C C C C C C
rs265478178
MGI SNP Detail
Alliance Variant
Chr5:25903162 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 within coordinates of
Xrcc2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226530416
MGI SNP Detail
Alliance Variant
Chr5:25903176 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 within coordinates of
Xrcc2 Intron
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs250118229
MGI SNP Detail
Alliance Variant
Chr5:25903194 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 within coordinates of
Xrcc2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G A A A A G A A A A A A G A A A A A A A G A A A A
rs256718869
MGI SNP Detail
Alliance Variant
Chr5:25903200 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 2 bp distal
Xrcc2 Intron
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G G T T T T G T T T T T T G T T T T T T T G T T T T
rs224290965
MGI SNP Detail
Alliance Variant
Chr5:25903202 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 4 bp distal
Xrcc2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A A G G G G A G G G G G G A G G G G G G G G G G G G
rs239838846
MGI SNP Detail
Alliance Variant
Chr5:25903214 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 16 bp distal
Xrcc2 Intron
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs257606780
MGI SNP Detail
Alliance Variant
Chr5:25903216 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 18 bp distal
Xrcc2 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T T A A A A T A A A A A A T A A A A A A A A A A A A
rs228214222
MGI SNP Detail
Alliance Variant
Chr5:25903219 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 21 bp distal
Xrcc2 Intron
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs252425049
MGI SNP Detail
Alliance Variant
Chr5:25903220 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 22 bp distal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T T C C C C T C C C C C C T C C C C C C C C C C C C
rs33340054
MGI SNP Detail
Alliance Variant
Chr5:25903293 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 95 bp distal
Xrcc2 Coding-NonSynonymous
SNP C/T T T T T T T T T T C T T C T C T T T C
rs233337479
MGI SNP Detail
Alliance Variant
Chr5:25903301 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 103 bp distal
Xrcc2 Coding-Synonymous
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs254679538
MGI SNP Detail
Alliance Variant
Chr5:25903319 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 121 bp distal
Xrcc2 Coding-Synonymous
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs47337368
MGI SNP Detail
Alliance Variant
Chr5:25903375 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 177 bp distal
Xrcc2 Intron
SNP C/T C C C C C C C C C T T C C T C
rs232461879
MGI SNP Detail
Alliance Variant
Chr5:25903377 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 179 bp distal
Xrcc2 Intron
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs250209829
MGI SNP Detail
Alliance Variant
Chr5:25903399 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 201 bp distal
Xrcc2 Intron
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs213332258
MGI SNP Detail
Alliance Variant
Chr5:25903499 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 301 bp distal
Xrcc2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs240750692
MGI SNP Detail
Alliance Variant
Chr5:25903558 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 360 bp distal
Xrcc2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258391342
MGI SNP Detail
Alliance Variant
Chr5:25903577 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 379 bp distal
Xrcc2 Intron
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A A C C C C A C C C C C C A C C C C C C C C C C C C
rs3160574
MGI SNP Detail
Alliance Variant
Chr5:25903584 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 386 bp distal
Xrcc2 Intron
SNP A/G G G A G G A
rs247219500
MGI SNP Detail
Alliance Variant
Chr5:25903616 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 418 bp distal
Xrcc2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C C T T T T C T T T T T T C T T T T T T T T T T T T
rs250302006
MGI SNP Detail
Alliance Variant
Chr5:25903661 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 463 bp distal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T T C C C C T C C C C C C T C C C C C C C C C C C C
rs218168751
MGI SNP Detail
Alliance Variant
Chr5:25903668 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 470 bp distal
Xrcc2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33568786
MGI SNP Detail
Alliance Variant
Chr5:25903688 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 490 bp distal
Xrcc2 Intron
SNP C/T T T T T T T T T T C T T C T C T T T C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257640574
MGI SNP Detail
Alliance Variant
Chr5:25903744 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 546 bp distal
Xrcc2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232421770
MGI SNP Detail
Alliance Variant
Chr5:25903747 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 549 bp distal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs3156640
MGI SNP Detail
Alliance Variant
Chr5:25903802 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 604 bp distal
Xrcc2 Intron
SNP C/T T T C C
rs264490300
MGI SNP Detail
Alliance Variant
Chr5:25903827 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 629 bp distal
Xrcc2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234287155
MGI SNP Detail
Alliance Variant
Chr5:25903890 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 692 bp distal
Xrcc2 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs243370143
MGI SNP Detail
Alliance Variant
Chr5:25903903 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 705 bp distal
Xrcc2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212348217
MGI SNP Detail
Alliance Variant
Chr5:25903928 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 730 bp distal
Xrcc2 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs3160573
MGI SNP Detail
Alliance Variant
Chr5:25903941 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 743 bp distal
Xrcc2 Intron
SNP A/T A A A T T T T T A T T T T T T T T T T A T A A T T T T A A T T A T A T T T T A T A T T T T T T T A T T T T
rs585674278
MGI SNP Detail
Alliance Variant
Chr5:25903977 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 779 bp distal
Xrcc2 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs244153907
MGI SNP Detail
Alliance Variant
Chr5:25903986 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 788 bp distal
Xrcc2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213364261
MGI SNP Detail
Alliance Variant
Chr5:25904038 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 840 bp distal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238313347
MGI SNP Detail
Alliance Variant
Chr5:25904129 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 931 bp distal
Xrcc2 Intron
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs262775394
MGI SNP Detail
Alliance Variant
Chr5:25904132 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 934 bp distal
Xrcc2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218932957
MGI SNP Detail
Alliance Variant
Chr5:25904159 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 961 bp distal
Xrcc2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241804432
MGI SNP Detail
Alliance Variant
Chr5:25904182 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 984 bp distal
Xrcc2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579980012
MGI SNP Detail
Alliance Variant
Chr5:25904250 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1052 bp distal
Xrcc2 Intron
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T C C T T T T C T T T T T T C T T T T T T T T T T T T
rs250338782
MGI SNP Detail
Alliance Variant
Chr5:25904257 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1059 bp distal
Xrcc2 Intron
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A G G A A A A G A A A A A A G A A A A A A A A A A A A
rs218016951
MGI SNP Detail
Alliance Variant
Chr5:25904262 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1064 bp distal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583376964
MGI SNP Detail
Alliance Variant
Chr5:25904287 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1089 bp distal
Xrcc2 Intron
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T A A T T T T A T T T T T T A T T T T T T T T T T T
rs239708734
MGI SNP Detail
Alliance Variant
Chr5:25904314 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1116 bp distal
Xrcc2 Intron
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs251167367
MGI SNP Detail
Alliance Variant
Chr5:25904346 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1148 bp distal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29548264
MGI SNP Detail
Alliance Variant
Chr5:25904359 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1161 bp distal
Xrcc2 Intron
SNP A/G A A A G G A
rs245418620
MGI SNP Detail
Alliance Variant
Chr5:25904380 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1182 bp distal
Xrcc2 Intron
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs3160572
MGI SNP Detail
Alliance Variant
Chr5:25904415 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1217 bp distal
Xrcc2 Intron
SNP A/G A G G G
rs226001422
MGI SNP Detail
Alliance Variant
Chr5:25904680 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Gm71960 within coordinates of
Rr608559 1482 bp distal
Xrcc2 Intron
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
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Showing SNP(s) 1 - 100 of 109

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory