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Mouse SNP Summary
Symbol
Name
ID 		Rr609578
regulatory region 609578
MGI:8071710

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223706439
MGI SNP Detail
Alliance Variant		 Chr5:33785337 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609574 within coordinates of
Rr609578 1943 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs242196058
MGI SNP Detail
Alliance Variant		 Chr5:33785341 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609574 within coordinates of
Rr609578 1939 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs579052628
MGI SNP Detail
Alliance Variant		 Chr5:33785367 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609574 within coordinates of
Rr609578 1913 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs37374657
MGI SNP Detail
Alliance Variant		 Chr5:33785435 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609574 within coordinates of
Rr609578 1845 bp proximal
 SNP C/T T T T T T T T T T T C T T C T
rs220223721
MGI SNP Detail
Alliance Variant		 Chr5:33785440 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609574 within coordinates of
Rr609578 1840 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6327054
MGI SNP Detail
Alliance Variant		 Chr5:33785568 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609574 within coordinates of
Rr609578 1712 bp proximal
 SNP A/T A A A A A A A A T T T A A T A A T T
rs265066035
MGI SNP Detail
Alliance Variant		 Chr5:33785603 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609574 within coordinates of
Rr609578 1677 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227507451
MGI SNP Detail
Alliance Variant		 Chr5:33785609 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609574 within coordinates of
Rr609578 1671 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs579382820
MGI SNP Detail
Alliance Variant		 Chr5:33785638 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609578 1642 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6340196
MGI SNP Detail
Alliance Variant		 Chr5:33785695 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609578 1585 bp proximal
 SNP A/C A A A A A A A C C A A A C A A C A
rs259767993
MGI SNP Detail
Alliance Variant		 Chr5:33785769 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609578 1511 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs228228000
MGI SNP Detail
Alliance Variant		 Chr5:33785852 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609578 1428 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs253827690
MGI SNP Detail
Alliance Variant		 Chr5:33785939 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609578 1341 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6341260
MGI SNP Detail
Alliance Variant		 Chr5:33785940 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609578 1340 bp proximal
 SNP A/T A T
rs238702152
MGI SNP Detail
Alliance Variant		 Chr5:33785989 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609578 1291 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs6341785
MGI SNP Detail
Alliance Variant		 Chr5:33786034 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609578 1246 bp proximal
 SNP C/T C T
rs216770158
MGI SNP Detail
Alliance Variant		 Chr5:33786103 Fam53a Intron
Fam53a Noncoding-Transcript-Variant
Rr609575 within coordinates of
Rr609578 1177 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs235217911
MGI SNP Detail
Alliance Variant		 Chr5:33786202 Cpgi15737 within coordinates of
Fam53a Intron
Fam53a mRNA-UTR
Fam53a Noncoding-Transcript-Variant
Rr609575 within coordinates of
Rr609578 1078 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253200335
MGI SNP Detail
Alliance Variant		 Chr5:33786446 Cpgi15737 within coordinates of
Fam53a Intron
Fam53a mRNA-UTR
Fam53a Noncoding-Transcript-Variant
Rr609576 within coordinates of
Rr609578 834 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582518864
MGI SNP Detail
Alliance Variant		 Chr5:33786473 Cpgi15737 within coordinates of
Fam53a Intron
Fam53a mRNA-UTR
Fam53a Noncoding-Transcript-Variant
Rr609576 within coordinates of
Rr609578 807 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223734997
MGI SNP Detail
Alliance Variant		 Chr5:33786532 Cpgi15737 within coordinates of
Fam53a Intron
Fam53a mRNA-UTR
Fam53a Noncoding-Transcript-Variant
Rr609576 within coordinates of
Rr609578 748 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs235773581
MGI SNP Detail
Alliance Variant		 Chr5:33786626 Cpgi15737 within coordinates of
Fam53a Intron
Fam53a mRNA-UTR
Fam53a Noncoding-Transcript-Variant
Rr609576 within coordinates of
Rr609578 654 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs261670942
MGI SNP Detail
Alliance Variant		 Chr5:33786831 Cpgi15737 within coordinates of
Fam53a Intron
Fam53a mRNA-UTR
Fam53a Noncoding-Transcript-Variant
Rr609578 449 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs220569890
MGI SNP Detail
Alliance Variant		 Chr5:33786837 Cpgi15737 within coordinates of
Fam53a Intron
Fam53a mRNA-UTR
Fam53a Noncoding-Transcript-Variant
Rr609578 443 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs246970139
MGI SNP Detail
Alliance Variant		 Chr5:33786885 Cpgi15737 within coordinates of
Fam53a Intron
Fam53a mRNA-UTR
Fam53a Noncoding-Transcript-Variant
Rr609578 395 bp proximal
Tssr50608 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262427866
MGI SNP Detail
Alliance Variant		 Chr5:33786912 Cpgi15737 within coordinates of
Fam53a Intron
Fam53a mRNA-UTR
Fam53a Noncoding-Transcript-Variant
Rr609578 368 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A G G G G G G G G G G
rs221483549
MGI SNP Detail
Alliance Variant		 Chr5:33786966 Cpgi15737 within coordinates of
Fam53a mRNA-UTR
Rr609577 within coordinates of
Rr609578 314 bp proximal
Tssr50609 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A
rs239240990
MGI SNP Detail
Alliance Variant		 Chr5:33787203 Cpgi15737 within coordinates of
Gm9903 Noncoding-Transcript-Variant
Rr399034 within coordinates of
Rr609577 within coordinates of
Rr609578 77 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259807856
MGI SNP Detail
Alliance Variant		 Chr5:33787207 Cpgi15737 within coordinates of
Gm9903 Noncoding-Transcript-Variant
Rr399034 within coordinates of
Rr609577 within coordinates of
Rr609578 73 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C A C C C C C C A C C C C C C C C C C C
rs228275313
MGI SNP Detail
Alliance Variant		 Chr5:33787224 Cpgi15737 within coordinates of
Gm9903 Noncoding-Transcript-Variant
Rr399034 within coordinates of
Rr609577 within coordinates of
Rr609578 56 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C
rs249721622
MGI SNP Detail
Alliance Variant		 Chr5:33787320 Cpgi15737 within coordinates of
Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs264552668
MGI SNP Detail
Alliance Variant		 Chr5:33787342 Cpgi15737 within coordinates of
Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs230729499
MGI SNP Detail
Alliance Variant		 Chr5:33787462 Cpgi15737 within coordinates of
Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs52055542
MGI SNP Detail
Alliance Variant		 Chr5:33787505 Cpgi15737 within coordinates of
Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP C/T T C
rs215627275
MGI SNP Detail
Alliance Variant		 Chr5:33787666 Cpgi15737 within coordinates of
Gm9903 Intron
Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T C T T C T T T T C T C T T T C T T T T T T C T T T T T T T C T T T
rs233438035
MGI SNP Detail
Alliance Variant		 Chr5:33787721 Gm9903 Intron
Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246873589
MGI SNP Detail
Alliance Variant		 Chr5:33787744 Gm9903 Intron
Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217749582
MGI SNP Detail
Alliance Variant		 Chr5:33787746 Gm9903 Intron
Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs242417149
MGI SNP Detail
Alliance Variant		 Chr5:33787896 Gm9903 Intron
Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256519835
MGI SNP Detail
Alliance Variant		 Chr5:33787964 Gm9903 Intron
Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs33344770
MGI SNP Detail
Alliance Variant		 Chr5:33788022 Gm9903 Intron
Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP A/T T T T A
rs237217573
MGI SNP Detail
Alliance Variant		 Chr5:33788082 Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G T G
rs262106185
MGI SNP Detail
Alliance Variant		 Chr5:33788142 Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T
rs221498041
MGI SNP Detail
Alliance Variant		 Chr5:33788181 Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs239278586
MGI SNP Detail
Alliance Variant		 Chr5:33788205 Gm9903 Noncoding-Transcript-Variant
Rr609578 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A T A A A T A A A A A A T A A A A A A A T A A A T
rs253164829
MGI SNP Detail
Alliance Variant		 Chr5:33788451 Gm9903 Noncoding-Transcript-Variant
Rr609578 154 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs221911232
MGI SNP Detail
Alliance Variant		 Chr5:33788468 Gm9903 Noncoding-Transcript-Variant
Rr609578 171 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244991015
MGI SNP Detail
Alliance Variant		 Chr5:33788513 Gm9903 Noncoding-Transcript-Variant
Rr609578 216 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs261444688
MGI SNP Detail
Alliance Variant		 Chr5:33788543 Gm9903 Noncoding-Transcript-Variant
Rr609578 246 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231003498
MGI SNP Detail
Alliance Variant		 Chr5:33788546 Gm9903 Noncoding-Transcript-Variant
Rr609578 249 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242895526
MGI SNP Detail
Alliance Variant		 Chr5:33788561 Gm9903 Noncoding-Transcript-Variant
Rr609578 264 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs259647585
MGI SNP Detail
Alliance Variant		 Chr5:33788595 Gm9903 Noncoding-Transcript-Variant
Rr609578 298 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs227062513
MGI SNP Detail
Alliance Variant		 Chr5:33788656 Gm9903 Noncoding-Transcript-Variant
Rr609578 359 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A G A A A A
rs248420255
MGI SNP Detail
Alliance Variant		 Chr5:33788726 Gm9903 Noncoding-Transcript-Variant
Rr609578 429 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A G A A A A A A G A A A A A A G A A G G
rs217785863
MGI SNP Detail
Alliance Variant		 Chr5:33788777 Gm9903 Noncoding-Transcript-Variant
Rr609578 480 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs233502619
MGI SNP Detail
Alliance Variant		 Chr5:33788800 Gm9903 Noncoding-Transcript-Variant
Rr609578 503 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254668111
MGI SNP Detail
Alliance Variant		 Chr5:33788850 Gm9903 Noncoding-Transcript-Variant
Rr609578 553 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G A G G G G
rs212323392
MGI SNP Detail
Alliance Variant		 Chr5:33788872 Gm9903 Noncoding-Transcript-Variant
Rr609578 575 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs585940331
MGI SNP Detail
Alliance Variant		 Chr5:33788895 Gm9903 Noncoding-Transcript-Variant
Rr609578 598 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239268683
MGI SNP Detail
Alliance Variant		 Chr5:33788924 Gm9903 Noncoding-Transcript-Variant
Rr609578 627 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
rs249895888
MGI SNP Detail
Alliance Variant		 Chr5:33788939 Gm9903 Noncoding-Transcript-Variant
Rr609578 642 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216046816
MGI SNP Detail
Alliance Variant		 Chr5:33788941 Gm9903 Noncoding-Transcript-Variant
Rr609578 644 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs232929419
MGI SNP Detail
Alliance Variant		 Chr5:33789016 Gm9903 Noncoding-Transcript-Variant
Rr609578 719 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253292524
MGI SNP Detail
Alliance Variant		 Chr5:33789153 Gm9903 Noncoding-Transcript-Variant
Rr609578 856 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs222010517
MGI SNP Detail
Alliance Variant		 Chr5:33789168 Gm9903 Noncoding-Transcript-Variant
Rr609578 871 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs242195089
MGI SNP Detail
Alliance Variant		 Chr5:33789169 Gm9903 Noncoding-Transcript-Variant
Rr609578 872 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs260855227
MGI SNP Detail
Alliance Variant		 Chr5:33789195 Gm9903 Noncoding-Transcript-Variant
Rr609578 898 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs223258650
MGI SNP Detail
Alliance Variant		 Chr5:33789201 Gm9903 Noncoding-Transcript-Variant
Rr609578 904 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs245779486
MGI SNP Detail
Alliance Variant		 Chr5:33789202 Gm9903 Noncoding-Transcript-Variant
Rr609578 905 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs259685940
MGI SNP Detail
Alliance Variant		 Chr5:33789301 Gm9903 Noncoding-Transcript-Variant
Rr609578 1004 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs227095266
MGI SNP Detail
Alliance Variant		 Chr5:33789312 Gm9903 Noncoding-Transcript-Variant
Rr609578 1015 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs242545289
MGI SNP Detail
Alliance Variant		 Chr5:33789340 Gm9903 Noncoding-Transcript-Variant
Rr609578 1043 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs260407394
MGI SNP Detail
Alliance Variant		 Chr5:33789467 Gm9903 Noncoding-Transcript-Variant
Rr609578 1170 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs228827872
MGI SNP Detail
Alliance Variant		 Chr5:33789504 Gm9903 Noncoding-Transcript-Variant
Rr609578 1207 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs250283048
MGI SNP Detail
Alliance Variant		 Chr5:33789541 Gm9903 Noncoding-Transcript-Variant
Rr609578 1244 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212684351
MGI SNP Detail
Alliance Variant		 Chr5:33789638 Gm9903 Noncoding-Transcript-Variant
Rr609578 1341 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs231172715
MGI SNP Detail
Alliance Variant		 Chr5:33789639 Gm9903 Noncoding-Transcript-Variant
Rr609578 1342 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T T T T T T T T T T T T T T A T T T T T T T T T T T
rs216180990
MGI SNP Detail
Alliance Variant		 Chr5:33789685 Gm9903 Noncoding-Transcript-Variant
Rr609578 1388 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs233053936
MGI SNP Detail
Alliance Variant		 Chr5:33789696 Gm9903 Noncoding-Transcript-Variant
Rr609578 1399 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253327232
MGI SNP Detail
Alliance Variant		 Chr5:33789704 Gm9903 Noncoding-Transcript-Variant
Rr609578 1407 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs218195516
MGI SNP Detail
Alliance Variant		 Chr5:33789721 Gm9903 Noncoding-Transcript-Variant
Rr609578 1424 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C C T C C C C C C C T C C C T
rs237319191
MGI SNP Detail
Alliance Variant		 Chr5:33789738 Gm9903 Noncoding-Transcript-Variant
Rr609578 1441 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs255485892
MGI SNP Detail
Alliance Variant		 Chr5:33789963 Gm9903 Intron
Gm9903 Noncoding-Transcript-Variant
Rr609578 1666 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223055901
MGI SNP Detail
Alliance Variant		 Chr5:33789971 Gm9903 Intron
Gm9903 Noncoding-Transcript-Variant
Rr609578 1674 bp distal
 SNP A/C/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs231574568
MGI SNP Detail
Alliance Variant		 Chr5:33790073 Gm9903 Intron
Gm9903 Noncoding-Transcript-Variant
Rr609578 1776 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs253529490
MGI SNP Detail
Alliance Variant		 Chr5:33790103 Gm9903 Intron
Gm9903 Noncoding-Transcript-Variant
Rr609578 1806 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220906587
MGI SNP Detail
Alliance Variant		 Chr5:33790152 Gm9903 Noncoding-Transcript-Variant
Rr609578 1855 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs242579179
MGI SNP Detail
Alliance Variant		 Chr5:33790295 Gm9903 Noncoding-Transcript-Variant
Rr609578 1998 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
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Showing SNP(s) 1 - 88 of 88
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory
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