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Mouse SNP Summary
Symbol
Name
ID
Rr620049
regulatory region 620049
MGI:8082181

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Showing SNP(s) 1 - 64 of 64

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220732924
MGI SNP Detail
Alliance Variant
Chr5:123153811 Cpgi16567 within coordinates of
Orai1 Intron
Orai1 mRNA-UTR
Orai1 Noncoding-Transcript-Variant
Rr620049 1851 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs233977331
MGI SNP Detail
Alliance Variant
Chr5:123153835 Cpgi16567 within coordinates of
Orai1 Intron
Orai1 mRNA-UTR
Orai1 Noncoding-Transcript-Variant
Rr620049 1827 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs253035857
MGI SNP Detail
Alliance Variant
Chr5:123153856 Cpgi16567 within coordinates of
Orai1 Intron
Orai1 mRNA-UTR
Orai1 Noncoding-Transcript-Variant
Rr620049 1806 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs220567116
MGI SNP Detail
Alliance Variant
Chr5:123153859 Cpgi16567 within coordinates of
Orai1 Intron
Orai1 mRNA-UTR
Orai1 Noncoding-Transcript-Variant
Rr620049 1803 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs239771863
MGI SNP Detail
Alliance Variant
Chr5:123153933 Cpgi16567 within coordinates of
Orai1 Intron
Orai1 mRNA-UTR
Orai1 Noncoding-Transcript-Variant
Rr620049 1729 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265787445
MGI SNP Detail
Alliance Variant
Chr5:123153959 Cpgi16567 within coordinates of
Orai1 Intron
Orai1 mRNA-UTR
Orai1 Noncoding-Transcript-Variant
Rr620049 1703 bp proximal
Tssr53184 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222799414
MGI SNP Detail
Alliance Variant
Chr5:123154044 Orai1 Intron
Orai1 mRNA-UTR
Orai1 Noncoding-Transcript-Variant
Rr620049 1618 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247355910
MGI SNP Detail
Alliance Variant
Chr5:123154203 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1459 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs261727271
MGI SNP Detail
Alliance Variant
Chr5:123154286 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1376 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs37206813
MGI SNP Detail
Alliance Variant
Chr5:123154289 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1373 bp proximal
SNP G/T T T T T T T T T G T G
rs37322753
MGI SNP Detail
Alliance Variant
Chr5:123154453 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1209 bp proximal
SNP A/G G G G G G G G G A G G
rs248073776
MGI SNP Detail
Alliance Variant
Chr5:123154506 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1156 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
rs261299864
MGI SNP Detail
Alliance Variant
Chr5:123154538 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1124 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T
rs37348980
MGI SNP Detail
Alliance Variant
Chr5:123154628 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1034 bp proximal
SNP A/C C C C C C C C C A C C
rs227552438
MGI SNP Detail
Alliance Variant
Chr5:123154645 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1017 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253288829
MGI SNP Detail
Alliance Variant
Chr5:123154649 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1013 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs584063480
MGI SNP Detail
Alliance Variant
Chr5:123154845 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 817 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs586238155
MGI SNP Detail
Alliance Variant
Chr5:123154862 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 800 bp proximal
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs37586862
MGI SNP Detail
Alliance Variant
Chr5:123154863 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 799 bp proximal
SNP A/G A A A G A A G G
rs214057206
MGI SNP Detail
Alliance Variant
Chr5:123154901 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 761 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236862187
MGI SNP Detail
Alliance Variant
Chr5:123155034 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 628 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252592319
MGI SNP Detail
Alliance Variant
Chr5:123155096 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 566 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs36474062
MGI SNP Detail
Alliance Variant
Chr5:123155101 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 561 bp proximal
SNP C/T T T T C T T C C
rs37910517
MGI SNP Detail
Alliance Variant
Chr5:123155115 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 547 bp proximal
SNP A/G G G G G G G G G A G G
rs234247148
MGI SNP Detail
Alliance Variant
Chr5:123155142 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 520 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252962120
MGI SNP Detail
Alliance Variant
Chr5:123155253 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 409 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs37599588
MGI SNP Detail
Alliance Variant
Chr5:123155320 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 342 bp proximal
SNP A/C C C C C C C C C A A
rs233385294
MGI SNP Detail
Alliance Variant
Chr5:123155357 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 305 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs37339847
MGI SNP Detail
Alliance Variant
Chr5:123155393 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 269 bp proximal
SNP C/G G G G G G C G G G C C
rs222556196
MGI SNP Detail
Alliance Variant
Chr5:123155584 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 78 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs37130300
MGI SNP Detail
Alliance Variant
Chr5:123155593 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 69 bp proximal
SNP A/T T T T T T T T T T A A T
rs261224780
MGI SNP Detail
Alliance Variant
Chr5:123155637 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 25 bp proximal
Tssr53187 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G A G G G G
rs219209538
MGI SNP Detail
Alliance Variant
Chr5:123155856 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242335038
MGI SNP Detail
Alliance Variant
Chr5:123155890 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs39944857
MGI SNP Detail
Alliance Variant
Chr5:123155992 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 56 bp distal
SNP G/T G G G G G T G G G G G G
rs227368656
MGI SNP Detail
Alliance Variant
Chr5:123156107 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 171 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs249404984
MGI SNP Detail
Alliance Variant
Chr5:123156126 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 190 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs262451200
MGI SNP Detail
Alliance Variant
Chr5:123156134 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 198 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T C T C T T T T T T T C T T T C
rs39092513
MGI SNP Detail
Alliance Variant
Chr5:123156195 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 259 bp distal
SNP A/G G G G G G A G G G G G G
rs249054340
MGI SNP Detail
Alliance Variant
Chr5:123156228 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 292 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T C T T T C
rs212738224
MGI SNP Detail
Alliance Variant
Chr5:123156282 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 346 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C G C G C C C C C C C G C C C G
rs228389645
MGI SNP Detail
Alliance Variant
Chr5:123156505 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 569 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247374836
MGI SNP Detail
Alliance Variant
Chr5:123156534 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 598 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214923420
MGI SNP Detail
Alliance Variant
Chr5:123156583 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 647 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs238355720
MGI SNP Detail
Alliance Variant
Chr5:123156591 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 655 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs38228827
MGI SNP Detail
Alliance Variant
Chr5:123156688 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 752 bp distal
SNP C/G G G G G G G G C C
rs214477190
MGI SNP Detail
Alliance Variant
Chr5:123156703 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 767 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs235945144
MGI SNP Detail
Alliance Variant
Chr5:123156723 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 787 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T C C C T T T T C T T T T C T C T T C T T T T C T T T C
rs249919854
MGI SNP Detail
Alliance Variant
Chr5:123156813 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 877 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs36545489
MGI SNP Detail
Alliance Variant
Chr5:123156916 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 980 bp distal
SNP C/T C C C C C C C T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242372892
MGI SNP Detail
Alliance Variant
Chr5:123156918 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 982 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs36277759
MGI SNP Detail
Alliance Variant
Chr5:123157018 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1082 bp distal
SNP G/T T T T T T G T T G G T G
rs221121985
MGI SNP Detail
Alliance Variant
Chr5:123157024 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1088 bp distal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs36277751
MGI SNP Detail
Alliance Variant
Chr5:123157257 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1321 bp distal
SNP C/T T T T T T C T T C T T
rs265082818
MGI SNP Detail
Alliance Variant
Chr5:123157280 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1344 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs36300036
MGI SNP Detail
Alliance Variant
Chr5:123157288 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1352 bp distal
SNP G/T T T T T T G T T G G G
rs244180461
MGI SNP Detail
Alliance Variant
Chr5:123157416 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1480 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs254522650
MGI SNP Detail
Alliance Variant
Chr5:123157428 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1492 bp distal
Rr620050 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228235924
MGI SNP Detail
Alliance Variant
Chr5:123157541 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1605 bp distal
Rr620050 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs36788322
MGI SNP Detail
Alliance Variant
Chr5:123157670 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1734 bp distal
Rr620050 within coordinates of
SNP A/G G G G G G A G G G G G G
rs215140373
MGI SNP Detail
Alliance Variant
Chr5:123157707 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1771 bp distal
Rr620050 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs36685148
MGI SNP Detail
Alliance Variant
Chr5:123157733 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1797 bp distal
Rr620050 within coordinates of
SNP A/G A A A A G A A A G G
rs250383885
MGI SNP Detail
Alliance Variant
Chr5:123157746 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1810 bp distal
Rr620050 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214723155
MGI SNP Detail
Alliance Variant
Chr5:123157781 Orai1 Intron
Orai1 Noncoding-Transcript-Variant
Rr620049 1845 bp distal
Rr620050 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
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Showing SNP(s) 1 - 64 of 64

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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