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Mouse SNP Summary
Symbol
Name
ID 		Rr626456
regulatory region 626456
MGI:8088588

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Showing SNP(s) 1 - 60 of 60

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233225665
MGI SNP Detail		 Chr6:8946724 Rr626456 1905 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579047357
MGI SNP Detail		 Chr6:8946745 Rr626456 1884 bp proximal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs582460489
MGI SNP Detail		 Chr6:8946751 Rr626456 1878 bp proximal
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs107992950
MGI SNP Detail		 Chr6:8946753 Rr626456 1876 bp proximal
 SNP A A A
rs107766069
MGI SNP Detail		 Chr6:8946757 Rr626456 1872 bp proximal
 SNP A A A
rs52269798
MGI SNP Detail		 Chr6:8946765 Rr626456 1864 bp proximal
 SNP A/G A A A G
rs253430411
MGI SNP Detail		 Chr6:8946807 Rr626456 1822 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222209256
MGI SNP Detail		 Chr6:8946816 Rr626456 1813 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs234055636
MGI SNP Detail		 Chr6:8946863 Rr626456 1766 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248716854
MGI SNP Detail		 Chr6:8946897 Rr626456 1732 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs219842086
MGI SNP Detail		 Chr6:8946958 Rr626456 1671 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246512021
MGI SNP Detail		 Chr6:8947014 Rr626456 1615 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs30944785
MGI SNP Detail		 Chr6:8947110 Rr626456 1519 bp proximal
 SNP A/T A A A T A A A
rs29968192
MGI SNP Detail		 Chr6:8947494 Rr626456 1135 bp proximal
 SNP C/T C C T C C C
rs240528227
MGI SNP Detail		 Chr6:8947619 Rr626456 1010 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261160692
MGI SNP Detail		 Chr6:8947645 Rr626456 984 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30370306
MGI SNP Detail		 Chr6:8947648 Rr626456 981 bp proximal
 SNP A/T A A T T T A A A A
rs244417039
MGI SNP Detail		 Chr6:8947715 Rr626456 914 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs264698335
MGI SNP Detail		 Chr6:8947767 Rr626456 862 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230927826
MGI SNP Detail		 Chr6:8947859 Rr626456 770 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs255327709
MGI SNP Detail		 Chr6:8947875 Rr626456 754 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T A T T T T T T A T T T T T T T A T T T T
rs216842838
MGI SNP Detail		 Chr6:8947945 Rr626456 684 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30416180
MGI SNP Detail		 Chr6:8948021 Rr626456 608 bp proximal
 SNP A/G A A G A A A
rs247803887
MGI SNP Detail		 Chr6:8948075 Rr626456 554 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs216897829
MGI SNP Detail		 Chr6:8948107 Rr626456 522 bp proximal
 SNP A/T A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230966234
MGI SNP Detail		 Chr6:8948108 Rr626456 521 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs36614851
MGI SNP Detail
Alliance Variant		 Chr6:8948166 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Rr626455 within coordinates of
Rr626456 463 bp proximal
 SNP A/G G G A A
rs211906191
MGI SNP Detail
Alliance Variant		 Chr6:8948251 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Rr626455 within coordinates of
Rr626456 378 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30806024
MGI SNP Detail
Alliance Variant		 Chr6:8948257 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Rr626455 within coordinates of
Rr626456 372 bp proximal
 SNP C/T T T C T T T
rs261818296
MGI SNP Detail
Alliance Variant		 Chr6:8948303 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Rr626455 within coordinates of
Rr626456 326 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs30760016
MGI SNP Detail
Alliance Variant		 Chr6:8948332 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Rr626455 within coordinates of
Rr626456 297 bp proximal
 SNP C/T T T C T T C
rs584638503
MGI SNP Detail
Alliance Variant		 Chr6:8948401 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Rr626455 within coordinates of
Rr626456 228 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240467259
MGI SNP Detail
Alliance Variant		 Chr6:8948409 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Rr626455 within coordinates of
Rr626456 220 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255266787
MGI SNP Detail
Alliance Variant		 Chr6:8948504 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626455 within coordinates of
Rr626456 125 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222494991
MGI SNP Detail
Alliance Variant		 Chr6:8948531 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626455 within coordinates of
Rr626456 98 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs237947968
MGI SNP Detail
Alliance Variant		 Chr6:8948577 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626455 within coordinates of
Rr626456 52 bp proximal
Tssr54926 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261435532
MGI SNP Detail
Alliance Variant		 Chr6:8948598 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626455 within coordinates of
Rr626456 31 bp proximal
Tssr54926 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs231374217
MGI SNP Detail
Alliance Variant		 Chr6:8948685 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626456 35 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs243376671
MGI SNP Detail
Alliance Variant		 Chr6:8948711 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626456 61 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265728975
MGI SNP Detail
Alliance Variant		 Chr6:8948732 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626456 82 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs226919074
MGI SNP Detail
Alliance Variant		 Chr6:8949096 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626456 446 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs39898868
MGI SNP Detail
Alliance Variant		 Chr6:8949181 Cpgi17155 within coordinates of
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626456 531 bp distal
 SNP G/T G G T
rs217015786
MGI SNP Detail
Alliance Variant		 Chr6:8949357 Cpgi17155 within coordinates of
Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Rr626456 707 bp distal
Rr626457 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224862284
MGI SNP Detail
Alliance Variant		 Chr6:8949370 Cpgi17155 within coordinates of
Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Rr626456 720 bp distal
Rr626457 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs253158868
MGI SNP Detail
Alliance Variant		 Chr6:8949428 Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Rr626456 778 bp distal
Rr626457 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs215107306
MGI SNP Detail
Alliance Variant		 Chr6:8949487 Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Rr626456 837 bp distal
Rr626457 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs578790013
MGI SNP Detail
Alliance Variant		 Chr6:8949556 Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Rr626456 906 bp distal
Rr626457 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29872527
MGI SNP Detail
Alliance Variant		 Chr6:8949656 Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Rr626456 1006 bp distal
Rr626457 within coordinates of
 SNP G/T T G T T T
rs256878780
MGI SNP Detail
Alliance Variant		 Chr6:8949667 Cpgi17156 within coordinates of
Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Rr626456 1017 bp distal
Rr626457 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs215585485
MGI SNP Detail
Alliance Variant		 Chr6:8949672 Cpgi17156 within coordinates of
Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Rr626456 1022 bp distal
Rr626457 within coordinates of
Tssr54931 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233468210
MGI SNP Detail
Alliance Variant		 Chr6:8949676 Cpgi17156 within coordinates of
Nxph1 Intron
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626456 1026 bp distal
Rr626457 within coordinates of
Tssr54931 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs255204055
MGI SNP Detail
Alliance Variant		 Chr6:8949738 Cpgi17156 within coordinates of
Nxph1 Intron
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626456 1088 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30663067
MGI SNP Detail
Alliance Variant		 Chr6:8949746 Cpgi17156 within coordinates of
Nxph1 Intron
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626456 1096 bp distal
 SNP A/G A A G A A A
rs242209223
MGI SNP Detail
Alliance Variant		 Chr6:8949750 Cpgi17156 within coordinates of
Nxph1 Intron
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626456 1100 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs260767236
MGI SNP Detail
Alliance Variant		 Chr6:8949904 Cpgi17156 within coordinates of
Nxph1 Intron
Nxph1 mRNA-UTR
Nxph1 Noncoding-Transcript-Variant
Rr626456 1254 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs223279789
MGI SNP Detail
Alliance Variant		 Chr6:8950314 Cpgi17156 within coordinates of
Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Nxph1 Splice-Site
Rr626456 1664 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs37564814
MGI SNP Detail
Alliance Variant		 Chr6:8950321 Cpgi17156 within coordinates of
Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Rr626456 1671 bp distal
 SNP G/T G G T
rs30454007
MGI SNP Detail
Alliance Variant		 Chr6:8950325 Cpgi17156 within coordinates of
Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Rr626456 1675 bp distal
 SNP C/T T C T T T
rs241625436
MGI SNP Detail
Alliance Variant		 Chr6:8950418 Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Rr626456 1768 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259142514
MGI SNP Detail
Alliance Variant		 Chr6:8950601 Nxph1 Intron
Nxph1 Noncoding-Transcript-Variant
Rr626456 1951 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
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Showing SNP(s) 1 - 60 of 60
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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