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Mouse SNP Summary
Symbol
Name
ID
Rr627312
regulatory region 627312
MGI:8089444

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs49356288
MGI SNP Detail
Alliance Variant
Chr6:25773486 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1989 bp proximal
SNP G/T T T T T T G T T G G T T T G T G T
rs50626392
MGI SNP Detail
Alliance Variant
Chr6:25773596 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1879 bp proximal
SNP C/T C C C C C C T C C C C C C C C
rs46069898
MGI SNP Detail
Alliance Variant
Chr6:25773640 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1835 bp proximal
SNP A/G G G G G G G G G G G A G G G G
rs245470215
MGI SNP Detail
Alliance Variant
Chr6:25773642 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1833 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs47610039
MGI SNP Detail
Alliance Variant
Chr6:25773841 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1634 bp proximal
SNP C/G G G G G G G G G G G G G G C
rs46424490
MGI SNP Detail
Alliance Variant
Chr6:25773895 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1580 bp proximal
SNP A/C A A A A A A C A A A A A A A
rs261617077
MGI SNP Detail
Alliance Variant
Chr6:25773959 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1516 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212086414
MGI SNP Detail
Alliance Variant
Chr6:25774003 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1472 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243534483
MGI SNP Detail
Alliance Variant
Chr6:25774046 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1429 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs254807040
MGI SNP Detail
Alliance Variant
Chr6:25774056 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1419 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583967533
MGI SNP Detail
Alliance Variant
Chr6:25774102 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1373 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586156018
MGI SNP Detail
Alliance Variant
Chr6:25774138 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1337 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A G A A A A
rs222179242
MGI SNP Detail
Alliance Variant
Chr6:25774156 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1319 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T C T T T T T T T C T C C T
rs240791897
MGI SNP Detail
Alliance Variant
Chr6:25774161 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1314 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs580881471
MGI SNP Detail
Alliance Variant
Chr6:25774192 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1283 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs252276414
MGI SNP Detail
Alliance Variant
Chr6:25774196 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1279 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C
rs222893765
MGI SNP Detail
Alliance Variant
Chr6:25774197 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1278 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs242822712
MGI SNP Detail
Alliance Variant
Chr6:25774204 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1271 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs264783685
MGI SNP Detail
Alliance Variant
Chr6:25774209 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1266 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs227250567
MGI SNP Detail
Alliance Variant
Chr6:25774238 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1237 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
rs241569869
MGI SNP Detail
Alliance Variant
Chr6:25774252 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1223 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs47154881
MGI SNP Detail
Alliance Variant
Chr6:25774254 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1221 bp proximal
SNP A/G A A A A A A A A A A A A G
rs48348175
MGI SNP Detail
Alliance Variant
Chr6:25774306 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1169 bp proximal
SNP A/G A A A A A A A A A A A A G
rs51196793
MGI SNP Detail
Alliance Variant
Chr6:25774319 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1156 bp proximal
SNP G/T T T T T T T G T T T T T T G
rs214243680
MGI SNP Detail
Alliance Variant
Chr6:25774357 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1118 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230451175
MGI SNP Detail
Alliance Variant
Chr6:25774371 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1104 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51596585
MGI SNP Detail
Alliance Variant
Chr6:25774372 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1103 bp proximal
SNP A/G G G G G G G A G G G G G A A
rs212378679
MGI SNP Detail
Alliance Variant
Chr6:25774406 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1069 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs47658241
MGI SNP Detail
Alliance Variant
Chr6:25774407 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1068 bp proximal
SNP C/T T T T T T T C T T T C T T C
rs254439531
MGI SNP Detail
Alliance Variant
Chr6:25774449 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1026 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs584567071
MGI SNP Detail
Alliance Variant
Chr6:25774479 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 996 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs216296173
MGI SNP Detail
Alliance Variant
Chr6:25774503 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 972 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A
rs234325820
MGI SNP Detail
Alliance Variant
Chr6:25774571 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 904 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs49185305
MGI SNP Detail
Alliance Variant
Chr6:25774579 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 896 bp proximal
SNP A/C A A A A A A C A A A A A A C C
rs222814126
MGI SNP Detail
Alliance Variant
Chr6:25774661 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 814 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237817200
MGI SNP Detail
Alliance Variant
Chr6:25774681 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 794 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256038720
MGI SNP Detail
Alliance Variant
Chr6:25774708 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 767 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs219761831
MGI SNP Detail
Alliance Variant
Chr6:25774740 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 735 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241260001
MGI SNP Detail
Alliance Variant
Chr6:25774770 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 705 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258569551
MGI SNP Detail
Alliance Variant
Chr6:25774787 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 688 bp proximal
SNP A/C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C C C C C C C C C C C C C C G C C C C C C C A C C C C
rs221428298
MGI SNP Detail
Alliance Variant
Chr6:25774818 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 657 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs239176288
MGI SNP Detail
Alliance Variant
Chr6:25774850 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 625 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A A A A A A A A A A A A A A T A A A A A A A T A A A A
rs265260170
MGI SNP Detail
Alliance Variant
Chr6:25774865 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 610 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G G G G G G G G G G G G G G C G G G G G G G G G G G
rs229716057
MGI SNP Detail
Alliance Variant
Chr6:25774934 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 541 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs254450382
MGI SNP Detail
Alliance Variant
Chr6:25774974 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 501 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs261626849
MGI SNP Detail
Alliance Variant
Chr6:25774994 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 481 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs256893811
MGI SNP Detail
Alliance Variant
Chr6:25775019 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 456 bp proximal
SNP C/T T C
rs48923021
MGI SNP Detail
Alliance Variant
Chr6:25775226 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 249 bp proximal
SNP A/T A A A A A A T A A A A A A T T
rs215959357
MGI SNP Detail
Alliance Variant
Chr6:25775267 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 208 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs46758271
MGI SNP Detail
Alliance Variant
Chr6:25775324 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 151 bp proximal
SNP A/T A A A A A A T A A A T A A T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs48125354
MGI SNP Detail
Alliance Variant
Chr6:25775414 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 61 bp proximal
SNP A/T T T T T T T T T T T A T T T T
rs46438059
MGI SNP Detail
Alliance Variant
Chr6:25775426 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 49 bp proximal
SNP A/C A A A A A A C A A A A A A C C
rs214568190
MGI SNP Detail
Alliance Variant
Chr6:25775468 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 7 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48304363
MGI SNP Detail
Alliance Variant
Chr6:25775476 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 within coordinates of
SNP A/T A A A A A A A A A T A A T
rs261077558
MGI SNP Detail
Alliance Variant
Chr6:25775507 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 11 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs49930140
MGI SNP Detail
Alliance Variant
Chr6:25775508 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 12 bp distal
SNP A/C C C C C C A C C A A C C C A C A C
rs49365076
MGI SNP Detail
Alliance Variant
Chr6:25775517 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Pot1a Splice-Site
Rr627312 21 bp distal
SNP C/G G G G G G G C G G G C G G C
rs47242717
MGI SNP Detail
Alliance Variant
Chr6:25775545 Pot1a Coding-Synonymous
Pot1a Noncoding-Transcript-Variant
Rr627312 49 bp distal
SNP A/G A A A A A A G A A A G A A G
rs46214550
MGI SNP Detail
Alliance Variant
Chr6:25775603 Pot1a Coding-NonSynonymous
Pot1a Noncoding-Transcript-Variant
Rr627312 107 bp distal
SNP A/G G G G G G G G G G G A G G G G
rs239241084
MGI SNP Detail
Alliance Variant
Chr6:25775632 Pot1a Coding-Synonymous
Pot1a Noncoding-Transcript-Variant
Rr627312 136 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262761033
MGI SNP Detail
Alliance Variant
Chr6:25775701 Pot1a Coding-Synonymous
Pot1a Noncoding-Transcript-Variant
Rr627312 205 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222022549
MGI SNP Detail
Alliance Variant
Chr6:25775764 Pot1a Coding-Synonymous
Pot1a Noncoding-Transcript-Variant
Rr627312 268 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs242054418
MGI SNP Detail
Alliance Variant
Chr6:25775770 Pot1a Coding-Synonymous
Pot1a Noncoding-Transcript-Variant
Rr627312 274 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264587378
MGI SNP Detail
Alliance Variant
Chr6:25775806 Pot1a Coding-Synonymous
Pot1a Noncoding-Transcript-Variant
Rr627312 310 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229401508
MGI SNP Detail
Alliance Variant
Chr6:25775808 Pot1a Coding-NonSynonymous
Pot1a Noncoding-Transcript-Variant
Rr627312 312 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs51929821
MGI SNP Detail
Alliance Variant
Chr6:25775834 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 338 bp distal
SNP A/C A A A A A A C A A A C A A C C
rs260029171
MGI SNP Detail
Alliance Variant
Chr6:25775877 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 381 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584721309
MGI SNP Detail
Alliance Variant
Chr6:25775883 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 387 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T T T T T T T T T T T T T T A T T T T T T T T T T T
rs227396874
MGI SNP Detail
Alliance Variant
Chr6:25775928 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 432 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C C C T C C C C C T C C C C
rs256770449
MGI SNP Detail
Alliance Variant
Chr6:25775940 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 444 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T T T T T T T T T T T T T T G T T T T T T T G T T T T
rs214267298
MGI SNP Detail
Alliance Variant
Chr6:25775942 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 446 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
rs237513739
MGI SNP Detail
Alliance Variant
Chr6:25775964 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 468 bp distal
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs48914135
MGI SNP Detail
Alliance Variant
Chr6:25775968 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 472 bp distal
SNP C/T C C C C C C C C C C T C C C C
rs48650034
MGI SNP Detail
Alliance Variant
Chr6:25776124 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 628 bp distal
SNP C/T C C C C C C T C C C C C C T
rs47210598
MGI SNP Detail
Alliance Variant
Chr6:25776135 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 639 bp distal
SNP C/G C C C C C C G C C C C C C G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234985722
MGI SNP Detail
Alliance Variant
Chr6:25776256 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 760 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G G G G G G G G G G G G G G T G G G G G G G T G G G G
rs252442689
MGI SNP Detail
Alliance Variant
Chr6:25776279 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 783 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C C C T C C C C C C T C C C C
rs215657425
MGI SNP Detail
Alliance Variant
Chr6:25776280 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 784 bp distal
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C C C C C C C C C C C C C C G C C C C C C G C C C C
rs232562158
MGI SNP Detail
Alliance Variant
Chr6:25776303 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 807 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs46800516
MGI SNP Detail
Alliance Variant
Chr6:25776325 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 829 bp distal
SNP A/C A A A A A A C A A A A A A C
rs222565414
MGI SNP Detail
Alliance Variant
Chr6:25776362 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 866 bp distal
SNP A/G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G A G G G G G G A G G G G
rs50944146
MGI SNP Detail
Alliance Variant
Chr6:25776386 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 890 bp distal
SNP A/G A A A A A A G A A A A A A G
rs255409271
MGI SNP Detail
Alliance Variant
Chr6:25776419 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 923 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs51710465
MGI SNP Detail
Alliance Variant
Chr6:25776458 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 962 bp distal
SNP C/T T T T T T T C T T T T T T C C
rs49185212
MGI SNP Detail
Alliance Variant
Chr6:25776497 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1001 bp distal
SNP A/G G G G G G G G G G G G G G A G
rs48195178
MGI SNP Detail
Alliance Variant
Chr6:25776538 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1042 bp distal
SNP C/T C C C C C C T C C C T C C T T
rs227475338
MGI SNP Detail
Alliance Variant
Chr6:25776582 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1086 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs244227200
MGI SNP Detail
Alliance Variant
Chr6:25776586 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1090 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs52039307
MGI SNP Detail
Alliance Variant
Chr6:25776599 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1103 bp distal
SNP C/T T T T T T T T T T T T T T C
rs51206950
MGI SNP Detail
Alliance Variant
Chr6:25776601 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1105 bp distal
SNP C/T T T T T T T C T T T T T T T
rs253338919
MGI SNP Detail
Alliance Variant
Chr6:25776643 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1147 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48642152
MGI SNP Detail
Alliance Variant
Chr6:25776666 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1170 bp distal
SNP A/G G G G G G G G G G G G G G A G
rs47792634
MGI SNP Detail
Alliance Variant
Chr6:25776676 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1180 bp distal
SNP C/T T T T T T T C T T T T T T T
rs246538812
MGI SNP Detail
Alliance Variant
Chr6:25776700 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1204 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215719518
MGI SNP Detail
Alliance Variant
Chr6:25776705 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1209 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232622408
MGI SNP Detail
Alliance Variant
Chr6:25776742 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1246 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51711776
MGI SNP Detail
Alliance Variant
Chr6:25776755 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1259 bp distal
SNP A/G G G G G G G G G G G G G G A G
rs213791903
MGI SNP Detail
Alliance Variant
Chr6:25776761 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1265 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235458640
MGI SNP Detail
Alliance Variant
Chr6:25776765 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1269 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260859816
MGI SNP Detail
Alliance Variant
Chr6:25776773 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627312 1277 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
<< first < prev12 next > last >>
Showing SNP(s) 1 - 100 of 122

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory