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Mouse SNP Summary
Symbol
Name
ID
Rr627313
regulatory region 627313
MGI:8089445

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228826732
MGI SNP Detail
Alliance Variant
Chr6:25806653 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1975 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G A G G G G G G A G G G G
rs46274659
MGI SNP Detail
Alliance Variant
Chr6:25806684 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1944 bp proximal
SNP C/T C C C C C C T C C C C C C T C
rs47795807
MGI SNP Detail
Alliance Variant
Chr6:25806688 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1940 bp proximal
SNP A/G A A A A A A A A A G A A A
rs215789066
MGI SNP Detail
Alliance Variant
Chr6:25806697 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1931 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs239088262
MGI SNP Detail
Alliance Variant
Chr6:25806768 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1860 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T G T T T T T T T T T T
rs257209470
MGI SNP Detail
Alliance Variant
Chr6:25806796 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1832 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C G C C G C C C C C C C C C C C C C C C C G C C C C G C C C C
rs213462624
MGI SNP Detail
Alliance Variant
Chr6:25806818 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1810 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C T C C C C C T C C C C
rs50039198
MGI SNP Detail
Alliance Variant
Chr6:25806825 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1803 bp proximal
SNP A/T T T T T T T T T T T T T T T A
rs249473360
MGI SNP Detail
Alliance Variant
Chr6:25806869 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1759 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T A T T A T T T T T T T T T T T T T T T T A T T T T T T T T T
rs223385780
MGI SNP Detail
Alliance Variant
Chr6:25806903 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1725 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C T C C C C T C C C
rs241951060
MGI SNP Detail
Alliance Variant
Chr6:25806938 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1690 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs253599687
MGI SNP Detail
Alliance Variant
Chr6:25806950 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1678 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A
rs223869486
MGI SNP Detail
Alliance Variant
Chr6:25806954 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1674 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs246502126
MGI SNP Detail
Alliance Variant
Chr6:25806994 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1634 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs262227807
MGI SNP Detail
Alliance Variant
Chr6:25807059 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1569 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G A G G G G G G A G G G G
rs45997175
MGI SNP Detail
Alliance Variant
Chr6:25807087 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1541 bp proximal
SNP G/T T T T T T G T T G G T T T G T G T
rs46531820
MGI SNP Detail
Alliance Variant
Chr6:25807114 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1514 bp proximal
SNP A/T A A A A A A A A A A T A A A A
rs48344961
MGI SNP Detail
Alliance Variant
Chr6:25807131 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1497 bp proximal
SNP A A
rs235723078
MGI SNP Detail
Alliance Variant
Chr6:25807137 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1491 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260125704
MGI SNP Detail
Alliance Variant
Chr6:25807144 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1484 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
rs228769814
MGI SNP Detail
Alliance Variant
Chr6:25807148 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1480 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
rs246285131
MGI SNP Detail
Alliance Variant
Chr6:25807158 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1470 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs216650507
MGI SNP Detail
Alliance Variant
Chr6:25807190 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1438 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs230921294
MGI SNP Detail
Alliance Variant
Chr6:25807204 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1424 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
rs255332219
MGI SNP Detail
Alliance Variant
Chr6:25807211 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1417 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212943499
MGI SNP Detail
Alliance Variant
Chr6:25807216 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1412 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs46141772
MGI SNP Detail
Alliance Variant
Chr6:25807289 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1339 bp proximal
SNP A/G A A A A A A A A A A G A A G A
rs248996270
MGI SNP Detail
Alliance Variant
Chr6:25807295 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1333 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217265714
MGI SNP Detail
Alliance Variant
Chr6:25807309 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1319 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs50115677
MGI SNP Detail
Alliance Variant
Chr6:25807355 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1273 bp proximal
SNP A/G G G G G G G G G G G G G G G A
rs50378491
MGI SNP Detail
Alliance Variant
Chr6:25807356 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1272 bp proximal
SNP C/G C C C C C C C C C C G C C C C
rs259396279
MGI SNP Detail
Alliance Variant
Chr6:25807371 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1257 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224164001
MGI SNP Detail
Alliance Variant
Chr6:25807386 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1242 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237013323
MGI SNP Detail
Alliance Variant
Chr6:25807398 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1230 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs579527322
MGI SNP Detail
Alliance Variant
Chr6:25807416 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1212 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs261822354
MGI SNP Detail
Alliance Variant
Chr6:25807470 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1158 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T C T T T T T T T C T T T T
rs221096576
MGI SNP Detail
Alliance Variant
Chr6:25807591 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1037 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A
rs235659013
MGI SNP Detail
Alliance Variant
Chr6:25807624 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 1004 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs49462226
MGI SNP Detail
Alliance Variant
Chr6:25807670 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 958 bp proximal
SNP A/G G G G G G G G G G G G G G A G
rs222153417
MGI SNP Detail
Alliance Variant
Chr6:25807687 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 941 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs240311515
MGI SNP Detail
Alliance Variant
Chr6:25807727 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 901 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs263334457
MGI SNP Detail
Alliance Variant
Chr6:25807835 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 793 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs231600813
MGI SNP Detail
Alliance Variant
Chr6:25807851 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 777 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs251104632
MGI SNP Detail
Alliance Variant
Chr6:25807922 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 706 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs216485859
MGI SNP Detail
Alliance Variant
Chr6:25807979 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 649 bp proximal
SNP A/C A C
rs229445421
MGI SNP Detail
Alliance Variant
Chr6:25807989 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 639 bp proximal
SNP C/T C T
rs50845169
MGI SNP Detail
Alliance Variant
Chr6:25808089 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 539 bp proximal
SNP C/T T T T T T C C T C C T T T C T C C
rs49092437
MGI SNP Detail
Alliance Variant
Chr6:25808139 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 489 bp proximal
SNP A/T A A A A A T A A T T A A A T A T T
rs258078072
MGI SNP Detail
Alliance Variant
Chr6:25808143 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 485 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215603971
MGI SNP Detail
Alliance Variant
Chr6:25808181 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 447 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238964723
MGI SNP Detail
Alliance Variant
Chr6:25808204 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 424 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257076917
MGI SNP Detail
Alliance Variant
Chr6:25808224 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 404 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs49625635
MGI SNP Detail
Alliance Variant
Chr6:25808236 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 392 bp proximal
SNP A/T A A A A A A A A A A A A A T A
rs229659249
MGI SNP Detail
Alliance Variant
Chr6:25808249 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 379 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs252980929
MGI SNP Detail
Alliance Variant
Chr6:25808251 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 377 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs45887167
MGI SNP Detail
Alliance Variant
Chr6:25808288 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 340 bp proximal
SNP C/T C C C C C C T C C C C C C C C
rs49223151
MGI SNP Detail
Alliance Variant
Chr6:25808404 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 224 bp proximal
SNP C/T C C C C C C C T C T T
rs256753584
MGI SNP Detail
Alliance Variant
Chr6:25808410 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 218 bp proximal
SNP A/G G A
rs223777343
MGI SNP Detail
Alliance Variant
Chr6:25808421 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 207 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215804520
MGI SNP Detail
Alliance Variant
Chr6:25808430 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 198 bp proximal
SNP A/G A G
rs50399713
MGI SNP Detail
Alliance Variant
Chr6:25808453 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 175 bp proximal
SNP C/T C C C C C C C T T C C C C T T
rs252731674
MGI SNP Detail
Alliance Variant
Chr6:25808456 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 172 bp proximal
SNP A/T T A
rs242836130
MGI SNP Detail
Alliance Variant
Chr6:25808460 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 168 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs260728882
MGI SNP Detail
Alliance Variant
Chr6:25808471 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 157 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228183552
MGI SNP Detail
Alliance Variant
Chr6:25808475 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 153 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252482438
MGI SNP Detail
Alliance Variant
Chr6:25808497 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 131 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs47913275
MGI SNP Detail
Alliance Variant
Chr6:25808505 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 123 bp proximal
SNP C/T C C C C C T C T C C
rs230796672
MGI SNP Detail
Alliance Variant
Chr6:25808570 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 58 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs50202324
MGI SNP Detail
Alliance Variant
Chr6:25808599 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 29 bp proximal
SNP C/T C C C C C T C C T T C C C T C T T
rs47268147
MGI SNP Detail
Alliance Variant
Chr6:25808611 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 17 bp proximal
SNP C/T T T T T T C T T C C T T T C T C C
rs230010248
MGI SNP Detail
Alliance Variant
Chr6:25808631 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248060239
MGI SNP Detail
Alliance Variant
Chr6:25808678 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 within coordinates of
SNP C/T T C
rs216398368
MGI SNP Detail
Alliance Variant
Chr6:25808741 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs220973620
MGI SNP Detail
Alliance Variant
Chr6:25808742 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 within coordinates of
SNP A/G A G
rs243082401
MGI SNP Detail
Alliance Variant
Chr6:25808749 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 within coordinates of
SNP C/T C T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223408273
MGI SNP Detail
Alliance Variant
Chr6:25808768 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243481571
MGI SNP Detail
Alliance Variant
Chr6:25808776 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T
rs250777178
MGI SNP Detail
Alliance Variant
Chr6:25808781 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr627313 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs218479040
MGI SNP Detail
Alliance Variant
Chr6:25808857 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs243151137
MGI SNP Detail
Alliance Variant
Chr6:25808882 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48921481
MGI SNP Detail
Alliance Variant
Chr6:25808888 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP G/T G G G G G G G G G G T G G T G
rs232475219
MGI SNP Detail
Alliance Variant
Chr6:25808892 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262866107
MGI SNP Detail
Alliance Variant
Chr6:25808965 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP A/C A A A A A A A A A A C C A A A A C C A C C C C A A C C C C A A A C C A A C A C A C A C A C A C C A C C C
rs230972225
MGI SNP Detail
Alliance Variant
Chr6:25808984 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs265288099
MGI SNP Detail
Alliance Variant
Chr6:25809000 Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP A/G A G
rs47124875
MGI SNP Detail
Alliance Variant
Chr6:25809023 Cpgi17207 within coordinates of
Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP C/T C C C C C C C C C C T C C T C
rs223470510
MGI SNP Detail
Alliance Variant
Chr6:25809032 Cpgi17207 within coordinates of
Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247440894
MGI SNP Detail
Alliance Variant
Chr6:25809046 Cpgi17207 within coordinates of
Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48812307
MGI SNP Detail
Alliance Variant
Chr6:25809074 Cpgi17207 within coordinates of
Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP A/G A A A A A G G A G G A A A G A G G
rs238366538
MGI SNP Detail
Alliance Variant
Chr6:25809143 Cpgi17207 within coordinates of
Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48065924
MGI SNP Detail
Alliance Variant
Chr6:25809150 Cpgi17207 within coordinates of
Pot1a Intron
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 within coordinates of
SNP C/T C C C C C T T C T T C C C T C T T
rs214502415
MGI SNP Detail
Alliance Variant
Chr6:25809207 Cpgi17207 within coordinates of
Pot1a mRNA-UTR
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 24 bp distal
Rr627314 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs49081609
MGI SNP Detail
Alliance Variant
Chr6:25809209 Cpgi17207 within coordinates of
Pot1a mRNA-UTR
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 26 bp distal
Rr627314 within coordinates of
Tssr60012 within coordinates of
SNP A/G G G G G G A A G A A G G A G A
rs47169131
MGI SNP Detail
Alliance Variant
Chr6:25809220 Cpgi17207 within coordinates of
Pot1a mRNA-UTR
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 37 bp distal
Rr627314 within coordinates of
Tssr60012 within coordinates of
SNP C/T C C C C C C C C C C T C C C C
rs46852802
MGI SNP Detail
Alliance Variant
Chr6:25809253 Cpgi17207 within coordinates of
Pot1a mRNA-UTR
Pot1a Noncoding-Transcript-Variant
Rr379092 within coordinates of
Rr627313 70 bp distal
Rr627314 within coordinates of
Tssr60013 within coordinates of
SNP C/T T T T T T C C T C C T C T C C C C
rs46335761
MGI SNP Detail
Chr6:25809283 Cpgi17207 within coordinates of
Rr379092 within coordinates of
Rr627313 100 bp distal
Rr627314 within coordinates of
SNP C/G G G G G G C C G C C G C C G C C C C
rs218425077
MGI SNP Detail
Chr6:25809295 Cpgi17207 within coordinates of
Rr379092 within coordinates of
Rr627313 112 bp distal
Rr627314 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs48642173
MGI SNP Detail
Chr6:25809305 Cpgi17207 within coordinates of
Rr379092 within coordinates of
Rr627313 122 bp distal
Rr627314 within coordinates of
SNP G/T G G G G G T G T T G T T
rs254840742
MGI SNP Detail
Chr6:25809339 Cpgi17207 within coordinates of
Rr379092 within coordinates of
Rr627313 156 bp distal
Rr627314 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225249164
MGI SNP Detail
Chr6:25809340 Cpgi17207 within coordinates of
Rr379092 within coordinates of
Rr627313 157 bp distal
Rr627314 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 100 of 182

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory

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