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Mouse SNP Summary
Symbol
Name
ID 		Rr628130
regulatory region 628130
MGI:8090262

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Showing SNP(s) 1 - 52 of 52

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs49560208
MGI SNP Detail
Alliance Variant		 Chr6:32561226 Plxna4 Intron
Rr628127 within coordinates of
Rr628130 1960 bp proximal
 SNP A/T A A A A T
rs49141435
MGI SNP Detail
Alliance Variant		 Chr6:32561296 Plxna4 Intron
Rr628127 within coordinates of
Rr628130 1890 bp proximal
 SNP A/G G G G A
rs261525311
MGI SNP Detail
Alliance Variant		 Chr6:32561436 Plxna4 Intron
Rr628127 within coordinates of
Rr628130 1750 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs584021779
MGI SNP Detail
Alliance Variant		 Chr6:32561513 Plxna4 Intron
Rr628127 within coordinates of
Rr628130 1673 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225771295
MGI SNP Detail
Alliance Variant		 Chr6:32561599 Plxna4 Intron
Rr628127 within coordinates of
Rr628130 1587 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251388017
MGI SNP Detail
Alliance Variant		 Chr6:32561767 Plxna4 Intron
Rr628127 within coordinates of
Rr628130 1419 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs263230532
MGI SNP Detail
Alliance Variant		 Chr6:32561775 Plxna4 Intron
Rr628127 within coordinates of
Rr628130 1411 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227660455
MGI SNP Detail
Alliance Variant		 Chr6:32561826 Plxna4 Intron
Rr628127 within coordinates of
Rr628130 1360 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs237719705
MGI SNP Detail
Alliance Variant		 Chr6:32561846 Plxna4 Intron
Rr628127 within coordinates of
Rr628130 1340 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs256522960
MGI SNP Detail
Alliance Variant		 Chr6:32561869 Plxna4 Intron
Rr628127 within coordinates of
Rr628130 1317 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs223723263
MGI SNP Detail
Alliance Variant		 Chr6:32562126 Plxna4 Intron
Rr628130 1060 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs30568510
MGI SNP Detail
Alliance Variant		 Chr6:32562315 Plxna4 Intron
Rr628129 within coordinates of
Rr628130 871 bp proximal
 SNP A/C A A A C A A C
rs218556385
MGI SNP Detail
Alliance Variant		 Chr6:32562327 Plxna4 Intron
Rr628129 within coordinates of
Rr628130 859 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs234256562
MGI SNP Detail
Alliance Variant		 Chr6:32562329 Plxna4 Intron
Rr628129 within coordinates of
Rr628130 857 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T C T T T T T T T T T T T T T T C T T T T
rs257766463
MGI SNP Detail
Alliance Variant		 Chr6:32562364 Plxna4 Intron
Rr628129 within coordinates of
Rr628130 822 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214826707
MGI SNP Detail
Alliance Variant		 Chr6:32562493 Plxna4 Intron
Rr628130 693 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234459767
MGI SNP Detail
Alliance Variant		 Chr6:32562507 Plxna4 Intron
Rr628130 679 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs244746116
MGI SNP Detail
Alliance Variant		 Chr6:32562526 Plxna4 Intron
Rr628130 660 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs214222286
MGI SNP Detail
Alliance Variant		 Chr6:32562538 Plxna4 Intron
Rr628130 648 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs236056486
MGI SNP Detail
Alliance Variant		 Chr6:32562648 Plxna4 Intron
Rr628130 538 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs578559241
MGI SNP Detail
Alliance Variant		 Chr6:32562669 Plxna4 Intron
Rr628130 517 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256182493
MGI SNP Detail
Alliance Variant		 Chr6:32562738 Plxna4 Intron
Rr628130 448 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G G G G G G T G G G G G G G G G G G G
rs46280792
MGI SNP Detail
Alliance Variant		 Chr6:32562949 Plxna4 Intron
Rr628130 237 bp proximal
 SNP A/G A A A A G
rs51777990
MGI SNP Detail
Alliance Variant		 Chr6:32562950 Plxna4 Intron
Rr628130 236 bp proximal
 SNP C/T T T T T C
rs251214957
MGI SNP Detail
Alliance Variant		 Chr6:32562954 Plxna4 Intron
Rr628130 232 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221456253
MGI SNP Detail
Alliance Variant		 Chr6:32563071 Plxna4 Intron
Rr628130 115 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237705094
MGI SNP Detail
Alliance Variant		 Chr6:32563108 Plxna4 Intron
Rr628130 78 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30164837
MGI SNP Detail
Alliance Variant		 Chr6:32563168 Plxna4 Intron
Rr628130 18 bp proximal
 SNP A/G G A G G A
rs220703127
MGI SNP Detail
Alliance Variant		 Chr6:32563218 Plxna4 Intron
Rr628130 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30954576
MGI SNP Detail
Alliance Variant		 Chr6:32563396 Plxna4 Intron
Rr628130 within coordinates of
 SNP C/G G G G C G G G
rs264146610
MGI SNP Detail
Alliance Variant		 Chr6:32563443 Cpgi17275 within coordinates of
Plxna4 Intron
Rr628130 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs235570945
MGI SNP Detail
Alliance Variant		 Chr6:32563528 Cpgi17275 within coordinates of
Plxna4 Intron
Rr628130 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs213538171
MGI SNP Detail
Alliance Variant		 Chr6:32563586 Cpgi17275 within coordinates of
Plxna4 Intron
Rr628130 within coordinates of
 SNP A/T A T
rs252651431
MGI SNP Detail
Alliance Variant		 Chr6:32563663 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 Intron
Rr628130 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G G C G G G G
rs260293762
MGI SNP Detail
Alliance Variant		 Chr6:32563739 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 Intron
Rr628130 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs227819918
MGI SNP Detail
Alliance Variant		 Chr6:32563746 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 Intron
Rr628130 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs581997552
MGI SNP Detail
Alliance Variant		 Chr6:32563784 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 Intron
Rr628130 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244735907
MGI SNP Detail
Alliance Variant		 Chr6:32563926 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 Intron
Rr628130 65 bp distal
Rr628131 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs214164530
MGI SNP Detail
Alliance Variant		 Chr6:32563985 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 Intron
Rr628130 124 bp distal
Rr628131 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs585085222
MGI SNP Detail
Alliance Variant		 Chr6:32564128 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 Intron
Rr628130 267 bp distal
Rr628131 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29933260
MGI SNP Detail
Alliance Variant		 Chr6:32564217 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 Intron
Rr628130 356 bp distal
Rr628131 within coordinates of
 SNP C/T C C T C C T
rs253845964
MGI SNP Detail
Alliance Variant		 Chr6:32564484 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 mRNA-UTR
Rr628130 623 bp distal
Rr628131 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs217777363
MGI SNP Detail
Alliance Variant		 Chr6:32564922 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 mRNA-UTR
Rr628130 1061 bp distal
Rr628131 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G
rs579324434
MGI SNP Detail
Alliance Variant		 Chr6:32564923 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 mRNA-UTR
Rr628130 1062 bp distal
Rr628131 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs242910625
MGI SNP Detail
Alliance Variant		 Chr6:32565008 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 mRNA-UTR
Rr628130 1147 bp distal
Rr628131 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs251201733
MGI SNP Detail
Alliance Variant		 Chr6:32565018 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Plxna4 mRNA-UTR
Rr628130 1157 bp distal
Rr628131 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs586114808
MGI SNP Detail		 Chr6:32565211 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Rr628130 1350 bp distal
Rr628132 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs579765202
MGI SNP Detail		 Chr6:32565245 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Rr628130 1384 bp distal
Rr628132 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C T C C C C C C C C C C C T C C C C C C C C C C C
rs221445591
MGI SNP Detail		 Chr6:32565760 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Rr628130 1899 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs231473849
MGI SNP Detail		 Chr6:32565798 Cpgi17276 within coordinates of
Gm67292 within coordinates of
Rr628130 1937 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250585277
MGI SNP Detail		 Chr6:32565841 Gm67292 within coordinates of
Rr628130 1980 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220234934
MGI SNP Detail		 Chr6:32565848 Gm67292 within coordinates of
Rr628130 1987 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
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Showing SNP(s) 1 - 52 of 52
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
07/22/2025
MGI 6.24 		The Jackson Laboratory
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