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Mouse SNP Summary
Symbol
Name
ID 		Rr628536
regulatory region 628536
MGI:8090668

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240272211
MGI SNP Detail		 Chr6:36362781 9330158H04Rik within coordinates of
Rr628536 1970 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs36394578
MGI SNP Detail		 Chr6:36362782 9330158H04Rik within coordinates of
Rr628536 1969 bp proximal
 SNP C/T C C C C C C C C C C C C T C
rs37963359
MGI SNP Detail		 Chr6:36362814 9330158H04Rik within coordinates of
Rr628536 1937 bp proximal
 SNP C/G G G G G G G C G G G G G G G
rs232239023
MGI SNP Detail		 Chr6:36362825 9330158H04Rik within coordinates of
Rr628536 1926 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs37860974
MGI SNP Detail		 Chr6:36362879 9330158H04Rik within coordinates of
Rr628536 1872 bp proximal
 SNP A/G G G G G G G G G G G G G A G
rs583282028
MGI SNP Detail		 Chr6:36362947 9330158H04Rik within coordinates of
Rr628536 1804 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C T C C C T C C C C C C T C C C C C C C C C C T T
rs36988237
MGI SNP Detail		 Chr6:36362974 9330158H04Rik within coordinates of
Rr628536 1777 bp proximal
 SNP A/C C C C C C C C C C C A C C A C
rs242161140
MGI SNP Detail		 Chr6:36362981 9330158H04Rik within coordinates of
Rr628536 1770 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265909951
MGI SNP Detail		 Chr6:36363027 9330158H04Rik within coordinates of
Rr628536 1724 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226604380
MGI SNP Detail		 Chr6:36363073 9330158H04Rik within coordinates of
Rr628536 1678 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs37331128
MGI SNP Detail		 Chr6:36363129 9330158H04Rik within coordinates of
Rr628536 1622 bp proximal
 SNP A/G G G G G G G G G G G G G A G
rs259740372
MGI SNP Detail		 Chr6:36363241 9330158H04Rik within coordinates of
Rr628536 1510 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs37869005
MGI SNP Detail		 Chr6:36363252 9330158H04Rik within coordinates of
Rr628536 1499 bp proximal
 SNP A/G G G G G G G G G G G G G A G
rs239442842
MGI SNP Detail		 Chr6:36363256 9330158H04Rik within coordinates of
Rr628536 1495 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255729886
MGI SNP Detail		 Chr6:36363272 9330158H04Rik within coordinates of
Rr628536 1479 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224638105
MGI SNP Detail		 Chr6:36363457 9330158H04Rik within coordinates of
Rr628536 1294 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs36604163
MGI SNP Detail		 Chr6:36363527 9330158H04Rik within coordinates of
Rr628536 1224 bp proximal
 SNP A/G G G G G G G G G G G G G A G
rs219553293
MGI SNP Detail		 Chr6:36363540 9330158H04Rik within coordinates of
Rr628536 1211 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs231929329
MGI SNP Detail		 Chr6:36363609 9330158H04Rik within coordinates of
Rr628536 1142 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258601715
MGI SNP Detail		 Chr6:36363619 9330158H04Rik within coordinates of
Rr628536 1132 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs213849804
MGI SNP Detail		 Chr6:36363658 9330158H04Rik within coordinates of
Rr628536 1093 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs39549048
MGI SNP Detail		 Chr6:36363689 9330158H04Rik within coordinates of
Rr628536 1062 bp proximal
 SNP C/G G G G G G G C G G G G G G G
rs248280683
MGI SNP Detail		 Chr6:36363713 9330158H04Rik within coordinates of
Rr628536 1038 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs212986075
MGI SNP Detail		 Chr6:36363724 9330158H04Rik within coordinates of
Rr628536 1027 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242166426
MGI SNP Detail		 Chr6:36363802 9330158H04Rik within coordinates of
Rr628536 949 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260271863
MGI SNP Detail		 Chr6:36363882 9330158H04Rik within coordinates of
Rr628536 869 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs37320723
MGI SNP Detail		 Chr6:36363945 9330158H04Rik within coordinates of
Rr628536 806 bp proximal
 SNP C/T T T T T T T C T T T T T T T
rs37309309
MGI SNP Detail		 Chr6:36364132 9330158H04Rik within coordinates of
Rr628536 619 bp proximal
 SNP C/T C C C C C C C C C C C C C T C
rs253502939
MGI SNP Detail		 Chr6:36364229 9330158H04Rik within coordinates of
Rr628536 522 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs37571954
MGI SNP Detail		 Chr6:36364255 9330158H04Rik within coordinates of
Rr628536 496 bp proximal
 SNP A/T T T T T T T A T T T A T T A T
rs239506773
MGI SNP Detail		 Chr6:36364262 9330158H04Rik within coordinates of
Rr628536 489 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs255790644
MGI SNP Detail		 Chr6:36364376 9330158H04Rik within coordinates of
Rr628536 375 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs36687277
MGI SNP Detail		 Chr6:36364378 9330158H04Rik within coordinates of
Rr628536 373 bp proximal
 SNP A/G A A A A A A G A A A A A G A
rs249723031
MGI SNP Detail		 Chr6:36364714 9330158H04Rik within coordinates of
Rr628535 within coordinates of
Rr628536 37 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs264628710
MGI SNP Detail		 Chr6:36364844 9330158H04Rik within coordinates of
Cpgi17300 within coordinates of
Rr628536 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232568131
MGI SNP Detail		 Chr6:36364881 9330158H04Rik within coordinates of
Cpgi17300 within coordinates of
Rr628536 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs37489975
MGI SNP Detail
Alliance Variant		 Chr6:36364978 9330158H04Rik within coordinates of
Chrm2 mRNA-UTR
Cpgi17300 within coordinates of
Rr628536 within coordinates of
Tssr55599 within coordinates of
 SNP A/G G G G G G G A G G G G G G G
rs36260662
MGI SNP Detail
Alliance Variant		 Chr6:36365213 Chrm2 mRNA-UTR
Chrm2 Noncoding-Transcript-Variant
Chrm2 Splice-Site
Cpgi17300 within coordinates of
Rr628536 184 bp distal
Rr628537 within coordinates of
 SNP A/C A A A A A A C A A A A A A
rs226331562
MGI SNP Detail
Alliance Variant		 Chr6:36365245 Chrm2 mRNA-UTR
Chrm2 Noncoding-Transcript-Variant
Cpgi17300 within coordinates of
Rr628536 216 bp distal
Rr628537 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs37168786
MGI SNP Detail
Alliance Variant		 Chr6:36365251 Chrm2 mRNA-UTR
Chrm2 Noncoding-Transcript-Variant
Cpgi17300 within coordinates of
Rr628536 222 bp distal
Rr628537 within coordinates of
 SNP C/T C C C C T C C C T C C T T
rs36364361
MGI SNP Detail
Alliance Variant		 Chr6:36365281 Chrm2 Intron
Chrm2 mRNA-UTR
Chrm2 Noncoding-Transcript-Variant
Cpgi17300 within coordinates of
Rr628536 252 bp distal
Rr628537 within coordinates of
 SNP A/T T T T T T T A T T T T T T T T
rs239616359
MGI SNP Detail
Alliance Variant		 Chr6:36365504 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Cpgi17300 within coordinates of
Rr628536 475 bp distal
Rr628537 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264254780
MGI SNP Detail
Alliance Variant		 Chr6:36365524 Chrm2 Intron
Chrm2 mRNA-UTR
Chrm2 Noncoding-Transcript-Variant
Cpgi17300 within coordinates of
Rr628536 495 bp distal
Rr628537 within coordinates of
Tssr55603 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215780469
MGI SNP Detail
Alliance Variant		 Chr6:36365696 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Cpgi17300 within coordinates of
Rr628536 667 bp distal
Rr628537 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs239943003
MGI SNP Detail
Alliance Variant		 Chr6:36365716 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Cpgi17300 within coordinates of
Rr628536 687 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253558677
MGI SNP Detail
Alliance Variant		 Chr6:36365815 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 786 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C T T T T T T T C T T T C
rs219471669
MGI SNP Detail
Alliance Variant		 Chr6:36366057 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1028 bp distal
Rr628538 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs239571341
MGI SNP Detail
Alliance Variant		 Chr6:36366058 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1029 bp distal
Rr628538 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs36808155
MGI SNP Detail
Alliance Variant		 Chr6:36366081 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1052 bp distal
Rr628538 within coordinates of
 SNP A/G G G G G G G A G G G G G G G G
rs220794892
MGI SNP Detail
Alliance Variant		 Chr6:36366124 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1095 bp distal
Rr628538 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A C A A A A A A C A A A A A A A C A A C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247030573
MGI SNP Detail
Alliance Variant		 Chr6:36366176 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1147 bp distal
Rr628538 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs266052344
MGI SNP Detail
Alliance Variant		 Chr6:36366208 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1179 bp distal
Rr628538 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs223860864
MGI SNP Detail
Alliance Variant		 Chr6:36366248 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1219 bp distal
Rr628538 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs108030938
MGI SNP Detail
Alliance Variant		 Chr6:36366283 Chrm2 Intron
Chrm2 mRNA-UTR
Chrm2 Noncoding-Transcript-Variant
Rr628536 1254 bp distal
Rr628538 within coordinates of
 SNP A/G A A G
rs255771573
MGI SNP Detail
Alliance Variant		 Chr6:36366287 Chrm2 Intron
Chrm2 mRNA-UTR
Chrm2 Noncoding-Transcript-Variant
Rr628536 1258 bp distal
Rr628538 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs36253469
MGI SNP Detail
Alliance Variant		 Chr6:36366375 Chrm2 Intron
Chrm2 mRNA-UTR
Chrm2 Noncoding-Transcript-Variant
Rr628536 1346 bp distal
Rr628538 within coordinates of
Tssr55608 within coordinates of
 SNP A/G G G G G G G A G G G G G G G G
rs37619092
MGI SNP Detail
Alliance Variant		 Chr6:36366509 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1480 bp distal
Rr628538 within coordinates of
 SNP A/C C C C C C C C C C C C C C A C
rs36770625
MGI SNP Detail
Alliance Variant		 Chr6:36366537 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1508 bp distal
Rr628538 within coordinates of
 SNP C/T C C C C C C C C C C C C C T C
rs234305048
MGI SNP Detail
Alliance Variant		 Chr6:36366659 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1630 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs254825323
MGI SNP Detail
Alliance Variant		 Chr6:36366663 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1634 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216284069
MGI SNP Detail
Alliance Variant		 Chr6:36366696 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1667 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A G A A A G A A A A A A G A A A A A A A G A A A G
rs238721788
MGI SNP Detail
Alliance Variant		 Chr6:36366725 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1696 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247254561
MGI SNP Detail
Alliance Variant		 Chr6:36366731 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1702 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs46449306
MGI SNP Detail
Alliance Variant		 Chr6:36366739 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1710 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G A G G G A G G G G G G A G G G G G G G A G G G A
rs36282435
MGI SNP Detail
Alliance Variant		 Chr6:36366787 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1758 bp distal
 SNP C/T C C C C C C C C C C C C C C T
rs249475838
MGI SNP Detail
Alliance Variant		 Chr6:36366918 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1889 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221272827
MGI SNP Detail
Alliance Variant		 Chr6:36366995 Chrm2 Intron
Chrm2 Noncoding-Transcript-Variant
Rr628536 1966 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 67 of 67
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory
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