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Mouse SNP Summary
Symbol
Name
ID 		Rr632529
regulatory region 632529
MGI:8094661

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SNP Density Heatmap
Chr6 from 79,994,637 bp to 79,999,261 bp
(4,625 bp)
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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214389579
MGI SNP Detail		 Chr6:79994668 Gm4409 within coordinates of
Rr632529 1969 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231357995
MGI SNP Detail		 Chr6:79994677 Gm4409 within coordinates of
Rr632529 1960 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251868888
MGI SNP Detail		 Chr6:79994762 Gm4409 within coordinates of
Rr632529 1875 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220611677
MGI SNP Detail		 Chr6:79994831 Gm4409 within coordinates of
Rr632529 1806 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T T G
rs238089536
MGI SNP Detail		 Chr6:79994865 Gm4409 within coordinates of
Rr632529 1772 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C C G
rs264306565
MGI SNP Detail		 Chr6:79994872 Gm4409 within coordinates of
Rr632529 1765 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225882997
MGI SNP Detail		 Chr6:79994881 Gm4409 within coordinates of
Rr632529 1756 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C C G G G C G G C C C G C G G G G G G G C G G G G
rs245126507
MGI SNP Detail		 Chr6:79994884 Gm4409 within coordinates of
Rr632529 1753 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G G A A A G A A G G G A G A A A A A A A G A A A A
rs256054457
MGI SNP Detail		 Chr6:79994891 Gm4409 within coordinates of
Rr632529 1746 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C C G G G C G G C C C G C G G G G G G G C G G G G
rs220652805
MGI SNP Detail		 Chr6:79994908 Gm4409 within coordinates of
Rr632529 1729 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs49503970
MGI SNP Detail		 Chr6:79994927 Gm4409 within coordinates of
Rr632529 1710 bp proximal
 SNP C/T C T C T
rs260225180
MGI SNP Detail		 Chr6:79994928 Gm4409 within coordinates of
Rr632529 1709 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232422992
MGI SNP Detail		 Chr6:79994977 Gm4409 within coordinates of
Rr632529 1660 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254538278
MGI SNP Detail		 Chr6:79994990 Gm4409 within coordinates of
Rr632529 1647 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A A T
rs37052665
MGI SNP Detail		 Chr6:79995019 Gm4409 within coordinates of
Rr632529 1618 bp proximal
 SNP C/T T T T T T T T T T T C T C T
rs242014824
MGI SNP Detail		 Chr6:79995020 Gm4409 within coordinates of
Rr632529 1617 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C C G
rs214062214
MGI SNP Detail		 Chr6:79995037 Gm4409 within coordinates of
Rr632529 1600 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231409784
MGI SNP Detail		 Chr6:79995044 Gm4409 within coordinates of
Rr632529 1593 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs37304854
MGI SNP Detail		 Chr6:79995092 Gm4409 within coordinates of
Rr632529 1545 bp proximal
 SNP A/C A A A A C A C C
rs257741787
MGI SNP Detail		 Chr6:79995132 Gm4409 within coordinates of
Rr632529 1505 bp proximal
 SNP C/G C G
rs38750763
MGI SNP Detail		 Chr6:79995140 Gm4409 within coordinates of
Rr632529 1497 bp proximal
 SNP C/T T T T T T T C T T C T T T T T
rs242900559
MGI SNP Detail		 Chr6:79995172 Gm4409 within coordinates of
Rr632529 1465 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G G A A A G A A G G G A G A A A A A A A A A G G A
rs260097447
MGI SNP Detail		 Chr6:79995198 Gm4409 within coordinates of
Rr632529 1439 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T T C C C T C C T T T C T C C C C C C T C T T C
rs226398432
MGI SNP Detail		 Chr6:79995600 Gm4409 within coordinates of
Rr632529 1037 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs39176314
MGI SNP Detail		 Chr6:79995660 Gm4409 within coordinates of
Rr632529 977 bp proximal
 SNP A/G G G G G G G G G A G A A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs249700459
MGI SNP Detail		 Chr6:79995733 Gm4409 within coordinates of
Rr632526 within coordinates of
Rr632529 904 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220329890
MGI SNP Detail		 Chr6:79995734 Gm4409 within coordinates of
Rr632526 within coordinates of
Rr632529 903 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs586069956
MGI SNP Detail		 Chr6:79995777 Gm4409 within coordinates of
Rr632526 within coordinates of
Rr632529 860 bp proximal
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs579493459
MGI SNP Detail		 Chr6:79995779 Gm4409 within coordinates of
Rr632526 within coordinates of
Rr632529 858 bp proximal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs239308861
MGI SNP Detail		 Chr6:79995818 Gm4409 within coordinates of
Rr632526 within coordinates of
Rr632529 819 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A
rs260286249
MGI SNP Detail
Alliance Variant		 Chr6:79996156 Gm4409 within coordinates of
Lrrtm4 mRNA-UTR
Rr632528 within coordinates of
Rr632529 481 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs37050596
MGI SNP Detail
Alliance Variant		 Chr6:79996308 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632528 within coordinates of
Rr632529 329 bp proximal
 SNP C/T C C C C C C C C C T C T T C
rs40026255
MGI SNP Detail
Alliance Variant		 Chr6:79996343 Gm4409 within coordinates of
Lrrtm4 Intron
Lrrtm4 mRNA-UTR
Rr632528 within coordinates of
Rr632529 294 bp proximal
 SNP A/T T T T T T T T T T T T T T T A
rs264137422
MGI SNP Detail
Alliance Variant		 Chr6:79996358 Gm4409 within coordinates of
Lrrtm4 Intron
Lrrtm4 mRNA-UTR
Rr632528 within coordinates of
Rr632529 279 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582971062
MGI SNP Detail
Alliance Variant		 Chr6:79996406 Gm4409 within coordinates of
Lrrtm4 Intron
Lrrtm4 mRNA-UTR
Rr632528 within coordinates of
Rr632529 231 bp proximal
 SNP T T T T T
rs586792865
MGI SNP Detail
Alliance Variant		 Chr6:79996728 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs36822393
MGI SNP Detail
Alliance Variant		 Chr6:79996846 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 within coordinates of
 SNP C/T T T T T T T C T
rs242074855
MGI SNP Detail
Alliance Variant		 Chr6:79996919 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255975369
MGI SNP Detail
Alliance Variant		 Chr6:79996982 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224904932
MGI SNP Detail
Alliance Variant		 Chr6:79996991 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs36389042
MGI SNP Detail
Alliance Variant		 Chr6:79997065 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 within coordinates of
 SNP A/G G G G G G G G G G A G A A G
rs216136239
MGI SNP Detail
Alliance Variant		 Chr6:79997324 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 63 bp distal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs579966704
MGI SNP Detail
Alliance Variant		 Chr6:79997392 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 131 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A G G A A A A A G G G A A A A A A A A A A A A A
rs583550999
MGI SNP Detail
Alliance Variant		 Chr6:79997404 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 143 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G
rs240238520
MGI SNP Detail
Alliance Variant		 Chr6:79997526 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 265 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs259132734
MGI SNP Detail
Alliance Variant		 Chr6:79997598 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 337 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs212667939
MGI SNP Detail
Alliance Variant		 Chr6:79997792 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 531 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230907034
MGI SNP Detail
Alliance Variant		 Chr6:79997799 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 538 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249761994
MGI SNP Detail
Alliance Variant		 Chr6:79997801 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 540 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs214511777
MGI SNP Detail
Alliance Variant		 Chr6:79997858 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 597 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A A G G G G A G G A A A G A G G G G G G G A G A A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231822450
MGI SNP Detail
Alliance Variant		 Chr6:79997991 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 730 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G G T T T T G T T G G G T G T T T T T T T G T G G T
rs253640192
MGI SNP Detail
Alliance Variant		 Chr6:79998028 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 767 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G A G G G G A A G G G G A G G A A A G A G A G G G G G A G A A G
rs224665245
MGI SNP Detail
Alliance Variant		 Chr6:79998031 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 770 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C C T T T T C T T C C C T C T T T T T T T C T C C T
rs248722203
MGI SNP Detail
Alliance Variant		 Chr6:79998168 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 907 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs38422985
MGI SNP Detail
Alliance Variant		 Chr6:79998212 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 951 bp distal
 SNP C/T C C C C C C C C C T C T C
rs221952079
MGI SNP Detail
Alliance Variant		 Chr6:79998269 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 1008 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs235719220
MGI SNP Detail
Alliance Variant		 Chr6:79998375 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 1114 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G G A
rs256041046
MGI SNP Detail
Alliance Variant		 Chr6:79998389 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 1128 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G G A A A A G A A G G G A G A A A A A A A G A G G A
rs224975522
MGI SNP Detail
Alliance Variant		 Chr6:79998397 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 1136 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs239703538
MGI SNP Detail
Alliance Variant		 Chr6:79998414 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 1153 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262998378
MGI SNP Detail
Alliance Variant		 Chr6:79998430 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 1169 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C A A C C C C A C C A A A C C C C C C C C C C C C C C
rs234974933
MGI SNP Detail
Alliance Variant		 Chr6:79998455 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 1194 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs39643075
MGI SNP Detail
Alliance Variant		 Chr6:79998524 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 1263 bp distal
 SNP A/G A A A A A A A A A G A G G G
rs213136153
MGI SNP Detail
Alliance Variant		 Chr6:79998570 Gm4409 within coordinates of
Lrrtm4 Intron
Rr632529 1309 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs36241001
MGI SNP Detail
Alliance Variant		 Chr6:79998594 Gm4409 within coordinates of
Lrrtm4 Intron
Lrrtm4 Splice-Site
Rr632529 1333 bp distal
 SNP A/T T T T T T T T T T A T A T
rs39715814
MGI SNP Detail
Alliance Variant		 Chr6:79999192 Gm4409 within coordinates of
Lrrtm4 Coding-Synonymous
Rr632529 1931 bp distal
 SNP A/G G G G G G G G G A G A A G
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Showing SNP(s) 1 - 66 of 66
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory