About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Rr634197
regulatory region 634197
MGI:8096329

<< first < prev12 next > last >>
Showing SNP(s) 1 - 100 of 109

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232606644
MGI SNP Detail
Alliance Variant
Chr6:90403368 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1999 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs50276318
MGI SNP Detail
Alliance Variant
Chr6:90403412 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1955 bp proximal
SNP C/T T C C
rs47423224
MGI SNP Detail
Alliance Variant
Chr6:90403430 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1937 bp proximal
SNP A/T A T
rs252707204
MGI SNP Detail
Alliance Variant
Chr6:90403465 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1902 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G G G G G G G G A G G A G G G G
rs221729821
MGI SNP Detail
Alliance Variant
Chr6:90403492 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Rr634197 1875 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249836314
MGI SNP Detail
Alliance Variant
Chr6:90403525 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Rr634197 1842 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260743331
MGI SNP Detail
Alliance Variant
Chr6:90403542 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Rr634197 1825 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C C C T C C C C C T C C C C C C C C C C C T C C T C C C C
rs219647651
MGI SNP Detail
Alliance Variant
Chr6:90403552 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Rr634197 1815 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs580035728
MGI SNP Detail
Alliance Variant
Chr6:90403571 Cfap100 Coding-NonSynonymous
Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1796 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241789677
MGI SNP Detail
Alliance Variant
Chr6:90403629 Cfap100 Coding-NonSynonymous
Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Cfap100 Splice-Site
Rr634197 1738 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G A G
rs254938495
MGI SNP Detail
Alliance Variant
Chr6:90403715 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1652 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225717224
MGI SNP Detail
Alliance Variant
Chr6:90403725 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1642 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583520283
MGI SNP Detail
Alliance Variant
Chr6:90403785 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1582 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238793237
MGI SNP Detail
Alliance Variant
Chr6:90403835 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1532 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257510472
MGI SNP Detail
Alliance Variant
Chr6:90403854 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1513 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs232674796
MGI SNP Detail
Alliance Variant
Chr6:90403889 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1478 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs259360621
MGI SNP Detail
Alliance Variant
Chr6:90403958 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1409 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219485282
MGI SNP Detail
Alliance Variant
Chr6:90404071 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1296 bp proximal
SNP A/T T T T T T T T T T T T T T T T T T T T A T A A T T T T A T A T T T A T T T T T T T T T T T A T A T T A T
rs228211378
MGI SNP Detail
Alliance Variant
Chr6:90404115 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1252 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs249988537
MGI SNP Detail
Alliance Variant
Chr6:90404156 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1211 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A A G A A A A A A A A A A A G A G A A A A
rs213591166
MGI SNP Detail
Alliance Variant
Chr6:90404211 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1156 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs232770822
MGI SNP Detail
Alliance Variant
Chr6:90404261 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1106 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252836549
MGI SNP Detail
Alliance Variant
Chr6:90404303 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1064 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215781003
MGI SNP Detail
Alliance Variant
Chr6:90404304 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1063 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A G A A A G A A A A A A A A A A A G A A G A A G A
rs239373975
MGI SNP Detail
Alliance Variant
Chr6:90404334 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1033 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264063157
MGI SNP Detail
Alliance Variant
Chr6:90404339 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1028 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220124894
MGI SNP Detail
Alliance Variant
Chr6:90404344 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1023 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244586299
MGI SNP Detail
Alliance Variant
Chr6:90404363 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 1004 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A T A T T A A A A T A T A A A T A A A A A A A A A A A T A A T A A T A
rs30940300
MGI SNP Detail
Alliance Variant
Chr6:90404368 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Rr634197 999 bp proximal
SNP A/G G A G G
rs219806442
MGI SNP Detail
Alliance Variant
Chr6:90404412 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Cfap100 Splice-Site
Rr634197 955 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238753831
MGI SNP Detail
Alliance Variant
Chr6:90404515 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Rr634197 852 bp proximal
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs257691113
MGI SNP Detail
Alliance Variant
Chr6:90404523 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cfap100 Splice-Site
Gm53295 within coordinates of
Rr634197 844 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30217646
MGI SNP Detail
Alliance Variant
Chr6:90404524 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cfap100 Splice-Site
Gm53295 within coordinates of
Rr634197 843 bp proximal
SNP A/G A G G A G A
rs247818473
MGI SNP Detail
Alliance Variant
Chr6:90404564 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 803 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs266180174
MGI SNP Detail
Alliance Variant
Chr6:90404604 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 763 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs227908403
MGI SNP Detail
Alliance Variant
Chr6:90404608 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 759 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244479643
MGI SNP Detail
Alliance Variant
Chr6:90404611 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 756 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257593350
MGI SNP Detail
Alliance Variant
Chr6:90404650 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 717 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A G A A A G A A A A A A A A A A A G A A G A A G A
rs226676521
MGI SNP Detail
Alliance Variant
Chr6:90404700 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 667 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246401430
MGI SNP Detail
Alliance Variant
Chr6:90404706 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 661 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs216653796
MGI SNP Detail
Alliance Variant
Chr6:90404746 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 621 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A G A
rs241898599
MGI SNP Detail
Alliance Variant
Chr6:90404778 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 589 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254606988
MGI SNP Detail
Alliance Variant
Chr6:90404798 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 569 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G A G G G A G G G G G G G G G G G A G G A G G A G
rs212115387
MGI SNP Detail
Alliance Variant
Chr6:90404884 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 483 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs235241372
MGI SNP Detail
Alliance Variant
Chr6:90404903 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 464 bp proximal
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs249517486
MGI SNP Detail
Alliance Variant
Chr6:90404913 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634197 454 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219773005
MGI SNP Detail
Alliance Variant
Chr6:90404923 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Cfap100 Splice-Site
Gm53295 within coordinates of
Rr634197 444 bp proximal
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs232575261
MGI SNP Detail
Alliance Variant
Chr6:90405013 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Rr634197 354 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251526760
MGI SNP Detail
Alliance Variant
Chr6:90405118 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Rr634197 249 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225359073
MGI SNP Detail
Alliance Variant
Chr6:90405143 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Rr634197 224 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250459657
MGI SNP Detail
Alliance Variant
Chr6:90405144 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Rr634197 223 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs264552018
MGI SNP Detail
Alliance Variant
Chr6:90405194 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Rr634197 173 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220457784
MGI SNP Detail
Alliance Variant
Chr6:90405276 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Rr634197 91 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238238115
MGI SNP Detail
Alliance Variant
Chr6:90405317 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Rr634197 50 bp proximal
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs257722282
MGI SNP Detail
Alliance Variant
Chr6:90405335 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Rr634197 32 bp proximal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs226586420
MGI SNP Detail
Alliance Variant
Chr6:90405341 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Rr634197 26 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246585212
MGI SNP Detail
Alliance Variant
Chr6:90405350 Cfap100 Intron
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Rr634196 within coordinates of
Rr634197 17 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265698340
MGI SNP Detail
Alliance Variant
Chr6:90405398 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Rr634197 within coordinates of
Tssr62021 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233078831
MGI SNP Detail
Alliance Variant
Chr6:90405402 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Rr634197 within coordinates of
Tssr62021 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs260192897
MGI SNP Detail
Alliance Variant
Chr6:90405413 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Rr634197 within coordinates of
Tssr62021 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs211929034
MGI SNP Detail
Alliance Variant
Chr6:90405521 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 within coordinates of
Tssr57646 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs230630787
MGI SNP Detail
Alliance Variant
Chr6:90405526 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 within coordinates of
Tssr57646 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243576782
MGI SNP Detail
Alliance Variant
Chr6:90405582 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 41 bp distal
Rr634198 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214187245
MGI SNP Detail
Alliance Variant
Chr6:90405618 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 77 bp distal
Rr634198 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G
rs46068280
MGI SNP Detail
Alliance Variant
Chr6:90405626 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 85 bp distal
Rr634198 within coordinates of
SNP A/G G A
rs232540997
MGI SNP Detail
Alliance Variant
Chr6:90405653 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 112 bp distal
Rr634198 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251671827
MGI SNP Detail
Alliance Variant
Chr6:90405681 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 140 bp distal
Rr634198 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225828143
MGI SNP Detail
Alliance Variant
Chr6:90405698 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 157 bp distal
Rr634198 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs239853989
MGI SNP Detail
Alliance Variant
Chr6:90405773 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 232 bp distal
Rr634199 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49432245
MGI SNP Detail
Alliance Variant
Chr6:90405823 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 282 bp distal
Rr634199 within coordinates of
SNP A/C A A C
rs220774318
MGI SNP Detail
Alliance Variant
Chr6:90405833 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 292 bp distal
Rr634199 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs50640155
MGI SNP Detail
Alliance Variant
Chr6:90405836 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 295 bp distal
Rr634199 within coordinates of
SNP C/T T C C
rs238347917
MGI SNP Detail
Alliance Variant
Chr6:90405856 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Cpgi17720 within coordinates of
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 315 bp distal
Rr634199 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G A A G G G G A G A G G G A G G G G G G G G G G G A G G G G A G
rs257686246
MGI SNP Detail
Alliance Variant
Chr6:90405873 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 332 bp distal
Rr634199 within coordinates of
Rr634200 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220463169
MGI SNP Detail
Alliance Variant
Chr6:90405909 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 368 bp distal
Rr634199 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240722767
MGI SNP Detail
Alliance Variant
Chr6:90405916 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 375 bp distal
Rr634199 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs263598306
MGI SNP Detail
Alliance Variant
Chr6:90405931 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 390 bp distal
Rr634199 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs224630976
MGI SNP Detail
Alliance Variant
Chr6:90406039 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 498 bp distal
Rr634199 within coordinates of
SNP G/T G T
rs234218271
MGI SNP Detail
Alliance Variant
Chr6:90406101 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 560 bp distal
Rr634199 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T
rs248297652
MGI SNP Detail
Alliance Variant
Chr6:90406158 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 617 bp distal
Rr634199 within coordinates of
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs264646926
MGI SNP Detail
Alliance Variant
Chr6:90406240 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 699 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224171277
MGI SNP Detail
Alliance Variant
Chr6:90406250 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 709 bp distal
SNP C/T T T T T T T T T T T T T T T T T T T C T C C T T T T C T T T T C T T T T T T T T T T T C T T C T T C T
rs243728438
MGI SNP Detail
Alliance Variant
Chr6:90406601 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1060 bp distal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A C A
rs214152396
MGI SNP Detail
Alliance Variant
Chr6:90406623 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1082 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs226616344
MGI SNP Detail
Alliance Variant
Chr6:90406624 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1083 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257999000
MGI SNP Detail
Alliance Variant
Chr6:90406669 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1128 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217538434
MGI SNP Detail
Alliance Variant
Chr6:90406676 Cfap100 Intron
Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1135 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242714509
MGI SNP Detail
Alliance Variant
Chr6:90406711 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1170 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261140403
MGI SNP Detail
Alliance Variant
Chr6:90406728 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1187 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C T C
rs212466326
MGI SNP Detail
Alliance Variant
Chr6:90406828 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1287 bp distal
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs230948723
MGI SNP Detail
Alliance Variant
Chr6:90406923 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1382 bp distal
SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A G A A A G A A A A A A A A A A A G A A G A A G A
rs251454490
MGI SNP Detail
Alliance Variant
Chr6:90406943 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1402 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220568754
MGI SNP Detail
Alliance Variant
Chr6:90406982 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1441 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C T C
rs240688169
MGI SNP Detail
Alliance Variant
Chr6:90407009 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1468 bp distal
SNP G/T G G G G G G G G G G G G G G G G G G G G G T T G G G G T G T G G G T G G G G G G G G G G G T G T G G T G
rs263481296
MGI SNP Detail
Alliance Variant
Chr6:90407072 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1531 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225787012
MGI SNP Detail
Alliance Variant
Chr6:90407119 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1578 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs251440699
MGI SNP Detail
Alliance Variant
Chr6:90407194 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1653 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs261464574
MGI SNP Detail
Alliance Variant
Chr6:90407217 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1676 bp distal
SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G G G A G G G G G A G G G G G G G G G G G A G G G G G G G
rs224356695
MGI SNP Detail
Alliance Variant
Chr6:90407239 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1698 bp distal
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs237594024
MGI SNP Detail
Alliance Variant
Chr6:90407247 Cfap100 mRNA-UTR
Cfap100 Noncoding-Transcript-Variant
Gm53295 within coordinates of
Gm67990 within coordinates of
Rr634197 1706 bp distal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
<< first < prev12 next > last >>
Showing SNP(s) 1 - 100 of 109

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

Building initial tooltip...