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Mouse SNP Summary
Symbol
Name
ID 		Rr635345
regulatory region 635345
MGI:8097477

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219361645
MGI SNP Detail
Alliance Variant		 Chr6:99062623 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1999 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs37113488
MGI SNP Detail
Alliance Variant		 Chr6:99062660 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1962 bp proximal
 SNP C/T C C C C C C C C C C T C C T C
rs260586253
MGI SNP Detail
Alliance Variant		 Chr6:99062744 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1878 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G G A A A A G A A A G A G
rs36501645
MGI SNP Detail
Alliance Variant		 Chr6:99062802 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1820 bp proximal
 SNP C/T C C C C C C T C C C T C C T C
rs251821780
MGI SNP Detail
Alliance Variant		 Chr6:99062882 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1740 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A A C C C C A C C C A C A
rs264202256
MGI SNP Detail
Alliance Variant		 Chr6:99063088 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1534 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221637011
MGI SNP Detail
Alliance Variant		 Chr6:99063107 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1515 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239500204
MGI SNP Detail
Alliance Variant		 Chr6:99063112 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1510 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs256560775
MGI SNP Detail
Alliance Variant		 Chr6:99063184 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1438 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs580548788
MGI SNP Detail
Alliance Variant		 Chr6:99063187 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1435 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225444733
MGI SNP Detail
Alliance Variant		 Chr6:99063269 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1353 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A
rs584218924
MGI SNP Detail
Alliance Variant		 Chr6:99063383 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1239 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs578829712
MGI SNP Detail
Alliance Variant		 Chr6:99063498 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1124 bp proximal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs582137209
MGI SNP Detail
Alliance Variant		 Chr6:99063508 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1114 bp proximal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs585063397
MGI SNP Detail
Alliance Variant		 Chr6:99063522 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1100 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs578910551
MGI SNP Detail
Alliance Variant		 Chr6:99063526 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1096 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs582857324
MGI SNP Detail
Alliance Variant		 Chr6:99063531 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1091 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs586328147
MGI SNP Detail
Alliance Variant		 Chr6:99063537 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1085 bp proximal
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs249967537
MGI SNP Detail
Alliance Variant		 Chr6:99063552 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1070 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264663364
MGI SNP Detail
Alliance Variant		 Chr6:99063615 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1007 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs233927477
MGI SNP Detail
Alliance Variant		 Chr6:99063674 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 948 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C C T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs259217910
MGI SNP Detail
Alliance Variant		 Chr6:99063738 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 884 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs215881871
MGI SNP Detail
Alliance Variant		 Chr6:99063754 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 868 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs233815822
MGI SNP Detail
Alliance Variant		 Chr6:99063784 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 838 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs245577665
MGI SNP Detail
Alliance Variant		 Chr6:99063788 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 834 bp proximal
 SNP A/C/T A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213444138
MGI SNP Detail
Alliance Variant		 Chr6:99063805 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 817 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230366311
MGI SNP Detail
Alliance Variant		 Chr6:99063823 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 799 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255193126
MGI SNP Detail
Alliance Variant		 Chr6:99063831 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 791 bp proximal
 SNP A/C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T A T T T T
rs218738221
MGI SNP Detail
Alliance Variant		 Chr6:99063954 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 668 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239142007
MGI SNP Detail
Alliance Variant		 Chr6:99064056 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 566 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C C T T T T C T C T C T C
rs264003911
MGI SNP Detail
Alliance Variant		 Chr6:99064154 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 468 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G A G G G G
rs221676599
MGI SNP Detail
Alliance Variant		 Chr6:99064167 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 455 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G A G G G G
rs239512490
MGI SNP Detail
Alliance Variant		 Chr6:99064188 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 434 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs585368407
MGI SNP Detail
Alliance Variant		 Chr6:99064232 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 390 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs250695391
MGI SNP Detail
Alliance Variant		 Chr6:99064234 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 388 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs219532709
MGI SNP Detail
Alliance Variant		 Chr6:99064370 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 252 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245278361
MGI SNP Detail
Alliance Variant		 Chr6:99064397 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 225 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs36564132
MGI SNP Detail
Alliance Variant		 Chr6:99064457 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 165 bp proximal
 SNP A/G A G A G
rs235099342
MGI SNP Detail
Alliance Variant		 Chr6:99064458 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 164 bp proximal
Tssr62271 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs38361779
MGI SNP Detail
Alliance Variant		 Chr6:99064484 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 138 bp proximal
Tssr62271 within coordinates of
 SNP A/G A G G G
rs247516983
MGI SNP Detail
Alliance Variant		 Chr6:99064677 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259908127
MGI SNP Detail
Alliance Variant		 Chr6:99064774 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227274271
MGI SNP Detail
Alliance Variant		 Chr6:99064791 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245639450
MGI SNP Detail
Alliance Variant		 Chr6:99064810 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 3 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs213502527
MGI SNP Detail
Alliance Variant		 Chr6:99064811 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 4 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T T C C C C T C T C T C T
rs228578627
MGI SNP Detail
Alliance Variant		 Chr6:99064816 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 9 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A A G G G G A G G G A G
rs252236633
MGI SNP Detail
Alliance Variant		 Chr6:99064821 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 14 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs37053525
MGI SNP Detail
Alliance Variant		 Chr6:99064849 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 42 bp distal
 SNP C/T T C T C
rs241747140
MGI SNP Detail
Alliance Variant		 Chr6:99064929 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 122 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251617904
MGI SNP Detail
Alliance Variant		 Chr6:99064966 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 159 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216276540
MGI SNP Detail
Alliance Variant		 Chr6:99064969 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 162 bp distal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C C G G G G C C G C G C
rs233162704
MGI SNP Detail
Alliance Variant		 Chr6:99064993 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 186 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs250756531
MGI SNP Detail
Alliance Variant		 Chr6:99065005 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 198 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219630213
MGI SNP Detail
Alliance Variant		 Chr6:99065034 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 227 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C C T T T T C T C T C T C
rs242505998
MGI SNP Detail
Alliance Variant		 Chr6:99065041 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 234 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C C T T T T C T C T C T C
rs261068054
MGI SNP Detail
Alliance Variant		 Chr6:99065058 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 251 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C C T T T T C T C T C T C
rs226865292
MGI SNP Detail
Alliance Variant		 Chr6:99065071 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 264 bp distal
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G G C C C C G C G C G C G
rs250269660
MGI SNP Detail
Alliance Variant		 Chr6:99065078 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 271 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259970972
MGI SNP Detail
Alliance Variant		 Chr6:99065100 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 293 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227331976
MGI SNP Detail
Alliance Variant		 Chr6:99065103 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 296 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239721064
MGI SNP Detail
Alliance Variant		 Chr6:99065109 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 302 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs37795070
MGI SNP Detail
Alliance Variant		 Chr6:99065136 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 329 bp distal
 SNP C/T T C T T C T
rs38598804
MGI SNP Detail
Alliance Variant		 Chr6:99065181 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 374 bp distal
 SNP A/T T A T A
rs249032518
MGI SNP Detail
Alliance Variant		 Chr6:99065262 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 455 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs218824425
MGI SNP Detail
Alliance Variant		 Chr6:99065351 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 544 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232866416
MGI SNP Detail
Alliance Variant		 Chr6:99065360 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 553 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs245703649
MGI SNP Detail
Alliance Variant		 Chr6:99065363 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 556 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214839033
MGI SNP Detail
Alliance Variant		 Chr6:99065373 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 566 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231825538
MGI SNP Detail
Alliance Variant		 Chr6:99065395 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 588 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244932610
MGI SNP Detail
Alliance Variant		 Chr6:99065399 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 592 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214253988
MGI SNP Detail
Alliance Variant		 Chr6:99065400 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 593 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs237480138
MGI SNP Detail
Alliance Variant		 Chr6:99065402 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 595 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs255712804
MGI SNP Detail
Alliance Variant		 Chr6:99065428 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 621 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs227402102
MGI SNP Detail
Alliance Variant		 Chr6:99065537 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 730 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs235658372
MGI SNP Detail
Alliance Variant		 Chr6:99065556 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 749 bp distal
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T T G G G G T G T G T G T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253759513
MGI SNP Detail
Alliance Variant		 Chr6:99065613 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 806 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C C T T T T C T C T C T C
rs221108787
MGI SNP Detail
Alliance Variant		 Chr6:99065676 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 869 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs239785750
MGI SNP Detail
Alliance Variant		 Chr6:99065683 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 876 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs257556558
MGI SNP Detail
Alliance Variant		 Chr6:99065791 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 984 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs579897989
MGI SNP Detail
Alliance Variant		 Chr6:99065797 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 990 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs46826308
MGI SNP Detail
Alliance Variant		 Chr6:99065891 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1084 bp distal
 SNP A/C C A
rs243852023
MGI SNP Detail
Alliance Variant		 Chr6:99065929 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1122 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T C T C T C
rs264348715
MGI SNP Detail
Alliance Variant		 Chr6:99066000 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1193 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs233814418
MGI SNP Detail
Alliance Variant		 Chr6:99066033 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1226 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs245807455
MGI SNP Detail
Alliance Variant		 Chr6:99066096 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1289 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256970244
MGI SNP Detail
Alliance Variant		 Chr6:99066145 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1338 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225849070
MGI SNP Detail
Alliance Variant		 Chr6:99066168 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1361 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G G T T T T G T T T G T G
rs243482715
MGI SNP Detail
Alliance Variant		 Chr6:99066200 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1393 bp distal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G G A A A A G A G A G A G
rs214645386
MGI SNP Detail
Alliance Variant		 Chr6:99066201 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1394 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs583270502
MGI SNP Detail
Alliance Variant		 Chr6:99066202 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1395 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs587268487
MGI SNP Detail
Alliance Variant		 Chr6:99066203 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1396 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235755096
MGI SNP Detail
Alliance Variant		 Chr6:99066270 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1463 bp distal
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs253199414
MGI SNP Detail
Alliance Variant		 Chr6:99066274 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1467 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs219661960
MGI SNP Detail
Alliance Variant		 Chr6:99066327 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1520 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs235799941
MGI SNP Detail
Alliance Variant		 Chr6:99066369 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1562 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253810819
MGI SNP Detail
Alliance Variant		 Chr6:99066390 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1583 bp distal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221154843
MGI SNP Detail
Alliance Variant		 Chr6:99066433 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1626 bp distal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232950949
MGI SNP Detail
Alliance Variant		 Chr6:99066456 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1649 bp distal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C A C A C A
rs580097133
MGI SNP Detail
Alliance Variant		 Chr6:99066521 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1714 bp distal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs257106953
MGI SNP Detail
Alliance Variant		 Chr6:99066524 Foxp1 Intron
Foxp1 Noncoding-Transcript-Variant
Rr635345 1717 bp distal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 100 of 104
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory