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Mouse SNP Summary
Symbol
Name
ID
Rr636452
regulatory region 636452
MGI:8098584

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Showing SNP(s) 1 - 45 of 45

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219720278
MGI SNP Detail
Chr6:113052305 Gt(ROSA)26Sor within coordinates of
Rr636449 within coordinates of
Rr636452 1970 bp proximal
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs36875892
MGI SNP Detail
Chr6:113052322 Gt(ROSA)26Sor within coordinates of
Rr636449 within coordinates of
Rr636452 1953 bp proximal
SNP A/T A A A A A A T A A A T A A T A
rs264818549
MGI SNP Detail
Chr6:113052398 Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr636449 within coordinates of
Rr636452 1877 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs39772798
MGI SNP Detail
Chr6:113052654 Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr636449 within coordinates of
Rr636452 1621 bp proximal
SNP C/T C C C C C C T C C C T T C C T C C
rs240491570
MGI SNP Detail
Chr6:113052663 Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr636449 within coordinates of
Rr636452 1612 bp proximal
SNP A/G G A
rs579899826
MGI SNP Detail
Chr6:113052691 Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr636449 within coordinates of
Rr636452 1584 bp proximal
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs37073874
MGI SNP Detail
Chr6:113052714 Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr636449 within coordinates of
Rr636452 1561 bp proximal
SNP A/C A A A A A A A A A A A A A C A
rs257501930
MGI SNP Detail
Chr6:113052728 Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr636449 within coordinates of
Rr636452 1547 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583100050
MGI SNP Detail
Chr6:113052753 Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr636449 within coordinates of
Rr636452 1522 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228101937
MGI SNP Detail
Chr6:113052810 Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636449 within coordinates of
Rr636452 1465 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs36381569
MGI SNP Detail
Chr6:113052927 Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636449 within coordinates of
Rr636452 1348 bp proximal
SNP C/T C C C C C C C C C C C C C T C
rs265694490
MGI SNP Detail
Chr6:113053127 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636449 within coordinates of
Rr636452 1148 bp proximal
SNP A/G A G
rs217098691
MGI SNP Detail
Chr6:113053154 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636449 within coordinates of
Rr636452 1121 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233747202
MGI SNP Detail
Chr6:113053213 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636449 within coordinates of
Rr636452 1062 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249681239
MGI SNP Detail
Chr6:113053226 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636449 within coordinates of
Rr636452 1049 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
rs233009423
MGI SNP Detail
Chr6:113053227 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636449 within coordinates of
Rr636452 1048 bp proximal
SNP A/G G A
rs213564100
MGI SNP Detail
Chr6:113053246 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636449 within coordinates of
Rr636452 1029 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T C T T T T T T T T T T T
rs234933180
MGI SNP Detail
Chr6:113053432 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636450 within coordinates of
Rr636452 843 bp proximal
SNP A/G G G G G G G A G G G G G G G A A G G A G A A A G G G G G G A A A A A G G A G G G G A G G G G G
rs250781255
MGI SNP Detail
Chr6:113053485 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636450 within coordinates of
Rr636452 790 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213988562
MGI SNP Detail
Chr6:113053506 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636450 within coordinates of
Rr636452 769 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C T C C T C C C C T C C C T C C C C C C T C C C C C C C C C C C
rs233946328
MGI SNP Detail
Chr6:113053568 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636450 within coordinates of
Rr636452 707 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
rs251250163
MGI SNP Detail
Chr6:113053626 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636450 within coordinates of
Rr636452 649 bp proximal
SNP A/C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C A C C C C C C C C C C C C C C C C C
rs226801242
MGI SNP Detail
Chr6:113053772 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636450 within coordinates of
Rr636452 503 bp proximal
SNP A/G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G
rs250340614
MGI SNP Detail
Chr6:113053797 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636450 within coordinates of
Rr636452 478 bp proximal
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T
rs256432728
MGI SNP Detail
Chr6:113053889 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636450 within coordinates of
Rr636452 386 bp proximal
SNP C/T C C C C C C C T C C C C C C T T T C C T C T T T C C C C C C C T T T T T C C T C C C C T T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259976004
MGI SNP Detail
Chr6:113053906 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636450 within coordinates of
Rr636452 369 bp proximal
SNP C/G G C
rs243957645
MGI SNP Detail
Chr6:113053932 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636450 within coordinates of
Rr636452 343 bp proximal
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257466106
MGI SNP Detail
Chr6:113054045 Cpgi17829 within coordinates of
Gt(ROSA)26Sor within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636450 within coordinates of
Rr636452 230 bp proximal
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs586909494
MGI SNP Detail
Alliance Variant
Chr6:113054484 Cpgi17829 within coordinates of
Rr379953 within coordinates of
Rr407325 within coordinates of
Rr636452 within coordinates of
Setd5 mRNA-UTR
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221745689
MGI SNP Detail
Alliance Variant
Chr6:113054830 Cpgi17829 within coordinates of
Rr379953 within coordinates of
Rr636452 220 bp distal
Rr636453 within coordinates of
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A G A A A A A A A A A A A
rs240508204
MGI SNP Detail
Alliance Variant
Chr6:113054879 Cpgi17829 within coordinates of
Rr379953 within coordinates of
Rr636452 269 bp distal
Rr636453 within coordinates of
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C T T T T T T C T T T T
rs260985879
MGI SNP Detail
Alliance Variant
Chr6:113054981 Cpgi17829 within coordinates of
Rr379953 within coordinates of
Rr636452 371 bp distal
Rr636453 within coordinates of
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232837809
MGI SNP Detail
Alliance Variant
Chr6:113054996 Cpgi17829 within coordinates of
Rr379953 within coordinates of
Rr636452 386 bp distal
Rr636453 within coordinates of
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253625124
MGI SNP Detail
Alliance Variant
Chr6:113055146 Cpgi17829 within coordinates of
Rr379953 within coordinates of
Rr636452 536 bp distal
Rr636453 within coordinates of
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47720399
MGI SNP Detail
Alliance Variant
Chr6:113055606 Rr636452 996 bp distal
Rr636453 within coordinates of
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP C C C
rs261317382
MGI SNP Detail
Alliance Variant
Chr6:113055689 Rr636452 1079 bp distal
Rr636453 within coordinates of
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs230961571
MGI SNP Detail
Alliance Variant
Chr6:113055894 Rr636452 1284 bp distal
Rr636453 within coordinates of
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244802162
MGI SNP Detail
Alliance Variant
Chr6:113055908 Rr636452 1298 bp distal
Rr636453 within coordinates of
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261341571
MGI SNP Detail
Alliance Variant
Chr6:113055974 Rr636452 1364 bp distal
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP A/G G A
rs213912513
MGI SNP Detail
Alliance Variant
Chr6:113056005 Rr636452 1395 bp distal
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233869663
MGI SNP Detail
Alliance Variant
Chr6:113056100 Rr636452 1490 bp distal
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G A G G G G G G G A A A G G A G A A A G G G G G G G G A A A A A G G A G G G G A G G G G G G
rs228930993
MGI SNP Detail
Alliance Variant
Chr6:113056156 Rr636452 1546 bp distal
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP G G G
rs219151046
MGI SNP Detail
Alliance Variant
Chr6:113056367 Rr636452 1757 bp distal
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239549251
MGI SNP Detail
Alliance Variant
Chr6:113056378 Rr636452 1768 bp distal
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs261629195
MGI SNP Detail
Alliance Variant
Chr6:113056485 Rr636452 1875 bp distal
Rr636454 within coordinates of
Setd5 Intron
Setd5 Noncoding-Transcript-Variant
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
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Showing SNP(s) 1 - 45 of 45

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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