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Mouse SNP Summary
Symbol
Name
ID 		Rr637560
regulatory region 637560
MGI:8099692

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223708528
MGI SNP Detail
Alliance Variant		 Chr6:118952407 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1952 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs237444754
MGI SNP Detail
Alliance Variant		 Chr6:118952488 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1871 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256927386
MGI SNP Detail
Alliance Variant		 Chr6:118952489 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1870 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G T T G G T G T G G G G G T G T G T T G T G G G T G G G G G G G G
rs219692415
MGI SNP Detail
Alliance Variant		 Chr6:118952491 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1868 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A T T A A T A T A A A A A T A T A T T A T A A A T A A A A A A A A
rs244233275
MGI SNP Detail
Alliance Variant		 Chr6:118952494 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1865 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C C C G G C C G C G C C C C C G C G C G G C G C C C G C C C C C C C C
rs265513128
MGI SNP Detail
Alliance Variant		 Chr6:118952561 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1798 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231632130
MGI SNP Detail
Alliance Variant		 Chr6:118952569 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1790 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs258217455
MGI SNP Detail
Alliance Variant		 Chr6:118952599 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1760 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G G A A G A G A A A A G A G A G G A G A A A G A A A A A A A A
rs4139675
MGI SNP Detail
Alliance Variant		 Chr6:118952604 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1755 bp proximal
 SNP C/G C C C G C C C
rs229108310
MGI SNP Detail
Alliance Variant		 Chr6:118952646 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1713 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G C C G G C G C G G G G G C G C G C C G C G G G C G G G C G G G G
rs242133316
MGI SNP Detail
Alliance Variant		 Chr6:118952669 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1690 bp proximal
 SNP A/G A A A A A A A G G G G G A G G G G G G A A
rs212685269
MGI SNP Detail
Alliance Variant		 Chr6:118952671 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1688 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A G A A A G G A
rs237733895
MGI SNP Detail
Alliance Variant		 Chr6:118952674 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1685 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251195132
MGI SNP Detail
Alliance Variant		 Chr6:118952675 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1684 bp proximal
 SNP G/T T G T T T T T T G G G G T G G T G G G G T
rs30858526
MGI SNP Detail
Alliance Variant		 Chr6:118952691 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1668 bp proximal
 SNP C/T T T C T T T
rs239109048
MGI SNP Detail
Alliance Variant		 Chr6:118952698 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1661 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A A G G A G A G G G G G A G A G A A G G G G G A G G G G G G G G
rs29831273
MGI SNP Detail
Alliance Variant		 Chr6:118952709 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1650 bp proximal
 SNP A/G G G A G G G
rs223735076
MGI SNP Detail
Alliance Variant		 Chr6:118952746 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1613 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G T T G G T G T G G G G G T G T G T T G G G G G T G G G G G G G G
rs230104881
MGI SNP Detail
Alliance Variant		 Chr6:118952747 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1612 bp proximal
 SNP A/C A A A A A A A A A A A A A A A A A A A A A C C A A C A C A A A A A C A C A C C A A A A A C A A A A A A A A
rs250681523
MGI SNP Detail
Alliance Variant		 Chr6:118952756 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1603 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs222750825
MGI SNP Detail
Alliance Variant		 Chr6:118952757 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1602 bp proximal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs247021010
MGI SNP Detail
Alliance Variant		 Chr6:118952785 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1574 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A G A G A A A A A G A G A G G A G A A A G A A A A A A A A
rs263242122
MGI SNP Detail
Alliance Variant		 Chr6:118952918 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1441 bp proximal
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs387510848
MGI SNP Detail
Alliance Variant		 Chr6:118952939 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1420 bp proximal
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs225299427
MGI SNP Detail
Alliance Variant		 Chr6:118952943 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1416 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs387195525
MGI SNP Detail
Alliance Variant		 Chr6:118953114 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1245 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs387665205
MGI SNP Detail
Alliance Variant		 Chr6:118953152 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1207 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T T T T T T T T T T
rs580106460
MGI SNP Detail
Alliance Variant		 Chr6:118953171 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1188 bp proximal
 SNP C/G G G G G G G G G G G G G G G G G G G G C G C G G G C G G G G G C G C G C C G C G G G C G G G G G G G
rs583699793
MGI SNP Detail
Alliance Variant		 Chr6:118953175 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1184 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G T G T G G G T G G G G G T G T G T T G T G G G T G G G G G G G
rs246436479
MGI SNP Detail
Alliance Variant		 Chr6:118953206 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1153 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C T T C T C T T T T T C T C T C C T C T T T C T T T T T T T T
rs258956062
MGI SNP Detail
Alliance Variant		 Chr6:118953209 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1150 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C T T C T C T T T T T C T C T C C T C T T T C T T T T T T T T
rs229189118
MGI SNP Detail
Alliance Variant		 Chr6:118953211 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1148 bp proximal
 SNP C/G C C C C C C C C C C C C C C C C C C C G C G C C G C G C C C C C G C G C G G C G C C C G C C C C C C C C
rs31628881
MGI SNP Detail
Alliance Variant		 Chr6:118953230 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1129 bp proximal
 SNP A/G A A A A A A G A G A A G A
rs254477870
MGI SNP Detail
Alliance Variant		 Chr6:118953231 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1128 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs31628883
MGI SNP Detail
Alliance Variant		 Chr6:118953249 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1110 bp proximal
 SNP C/T C C C C C C T C T C C C C C
rs255998659
MGI SNP Detail
Alliance Variant		 Chr6:118953274 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1085 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A G A G A A A A A G A G A G G A G A A A G A A A G A A A A
rs215344698
MGI SNP Detail
Alliance Variant		 Chr6:118953279 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1080 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A A G A A A A A G A G A G G A A A A A G A A A G A A A A
rs240554479
MGI SNP Detail
Alliance Variant		 Chr6:118953280 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1079 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C T C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs248397690
MGI SNP Detail
Alliance Variant		 Chr6:118953304 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1055 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs47779866
MGI SNP Detail
Alliance Variant		 Chr6:118953331 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1028 bp proximal
 SNP A/G G G A
rs217793676
MGI SNP Detail
Alliance Variant		 Chr6:118953347 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 1012 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31629775
MGI SNP Detail
Alliance Variant		 Chr6:118953386 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 973 bp proximal
 SNP A/G A A A A A A G A G A G A G A
rs250726689
MGI SNP Detail
Alliance Variant		 Chr6:118953405 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 954 bp proximal
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs214521514
MGI SNP Detail
Alliance Variant		 Chr6:118953456 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 903 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237214214
MGI SNP Detail
Alliance Variant		 Chr6:118953479 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 880 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A G A G A A A A A A G A G G A G A A A G A A A G A A A A
rs262991521
MGI SNP Detail
Alliance Variant		 Chr6:118953480 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 879 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A G A G A A A A A A G A G G A G A A A G A A A G A A A A
rs225076116
MGI SNP Detail
Alliance Variant		 Chr6:118953489 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 870 bp proximal
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C C T T C T C T T T T T T C T C C T C T T T C T T T C T T T T
rs240930370
MGI SNP Detail
Alliance Variant		 Chr6:118953668 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 691 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253220520
MGI SNP Detail
Alliance Variant		 Chr6:118953671 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 688 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222670443
MGI SNP Detail
Alliance Variant		 Chr6:118953689 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 670 bp proximal
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235789344
MGI SNP Detail
Alliance Variant		 Chr6:118953938 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 421 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs261903387
MGI SNP Detail
Alliance Variant		 Chr6:118953941 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 418 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs230046964
MGI SNP Detail
Alliance Variant		 Chr6:118953947 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 412 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243894413
MGI SNP Detail
Alliance Variant		 Chr6:118953957 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 402 bp proximal
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs265437699
MGI SNP Detail
Alliance Variant		 Chr6:118953994 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 365 bp proximal
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs232148079
MGI SNP Detail
Alliance Variant		 Chr6:118954089 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 270 bp proximal
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C T C T C C C C C T C T C T T C T C C C T C C C C C C C C
rs46472191
MGI SNP Detail
Alliance Variant		 Chr6:118954107 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 252 bp proximal
 SNP A A A A A A
rs30364498
MGI SNP Detail
Alliance Variant		 Chr6:118954341 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 18 bp proximal
 SNP A/G A A A A A A A G A A G G A G A G A A A
rs31629778
MGI SNP Detail
Alliance Variant		 Chr6:118954413 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G G G G G G G A G G G G G G G
rs30313948
MGI SNP Detail
Alliance Variant		 Chr6:118954448 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G G G G G G G A G G G A G G G G G G G
rs387101353
MGI SNP Detail
Alliance Variant		 Chr6:118954493 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G A G A G G G G G A G A G A A G A G G G A G G G G G G G G
rs239283966
MGI SNP Detail
Alliance Variant		 Chr6:118954510 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G C G C C G G C G C G G G G G C G C G C C G C G G G C G G G G G G G G
rs258888909
MGI SNP Detail
Alliance Variant		 Chr6:118954537 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C T C T C C C C C T C T C T T C T C C C T C C C C C C C C
rs217392035
MGI SNP Detail
Alliance Variant		 Chr6:118954542 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T A T A A T T A T A T T T T T A T A T A A T A T T T A T T T T T T T T
rs234490666
MGI SNP Detail
Alliance Variant		 Chr6:118954557 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G A G A G G G G G A G A G A A G A G G G A G G G G G G G G
rs253253101
MGI SNP Detail
Alliance Variant		 Chr6:118954574 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T T C C T C T C C C C C T C T C T T C T C C C T C C C C C C C C
rs218024159
MGI SNP Detail
Alliance Variant		 Chr6:118954583 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T T C T T T T T C T C T C C T T T T T C T T T T T T T T
rs581524496
MGI SNP Detail
Alliance Variant		 Chr6:118954592 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235875212
MGI SNP Detail
Alliance Variant		 Chr6:118954593 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A G A G A A A A A G A G A G G A G A A A G A A A G A A A A
rs261514828
MGI SNP Detail
Alliance Variant		 Chr6:118954613 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A A G G A G A G G G G G A G A G A A G G G G G A G G G G G G G G
rs222477272
MGI SNP Detail
Alliance Variant		 Chr6:118954627 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs30218991
MGI SNP Detail
Alliance Variant		 Chr6:118954632 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T T T C T T T
rs263094932
MGI SNP Detail
Alliance Variant		 Chr6:118954633 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G A A G G A G A G G G G G A G A G A A G A G G G A G G G G G G G G
rs227913490
MGI SNP Detail
Alliance Variant		 Chr6:118954636 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241790644
MGI SNP Detail
Alliance Variant		 Chr6:118954691 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs387834667
MGI SNP Detail
Alliance Variant		 Chr6:118954726 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs261047498
MGI SNP Detail
Alliance Variant		 Chr6:118954732 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs31629781
MGI SNP Detail
Alliance Variant		 Chr6:118954805 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G G G G G G G G G A G G G G G G
rs31629783
MGI SNP Detail
Alliance Variant		 Chr6:118954843 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP G/T G G G G G G G G T G T G T T G
rs30231203
MGI SNP Detail
Alliance Variant		 Chr6:118954973 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G G G G G G G G A G G G A G G G G G G G
rs30511367
MGI SNP Detail
Alliance Variant		 Chr6:118955021 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T C C T C C C
rs30994939
MGI SNP Detail
Alliance Variant		 Chr6:118955107 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T C C C C C C C T C C C T C C C C C C C
rs31630807
MGI SNP Detail
Alliance Variant		 Chr6:118955210 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/C C C C C C C C C C C C C C A C
rs31630809
MGI SNP Detail
Alliance Variant		 Chr6:118955292 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/C C C C C C C C C C A C C C C C A
rs31630811
MGI SNP Detail
Alliance Variant		 Chr6:118955298 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T C C C C C C T C T C C T C
rs247605801
MGI SNP Detail
Alliance Variant		 Chr6:118955303 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/C/T C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212187778
MGI SNP Detail
Alliance Variant		 Chr6:118955304 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs230769902
MGI SNP Detail
Alliance Variant		 Chr6:118955310 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31630813
MGI SNP Detail
Alliance Variant		 Chr6:118955311 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G G G G G G G G G A G A G A A G
rs31631685
MGI SNP Detail
Alliance Variant		 Chr6:118955343 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/C C C C C C C A C A C C A C C
rs236927101
MGI SNP Detail
Alliance Variant		 Chr6:118955344 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs262858401
MGI SNP Detail
Alliance Variant		 Chr6:118955346 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs31631687
MGI SNP Detail
Alliance Variant		 Chr6:118955347 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP C/G G G G G G G G G G G C G G C G
rs30865812
MGI SNP Detail
Alliance Variant		 Chr6:118955410 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G A A A A A A A G A A A G A A A A A
rs261078226
MGI SNP Detail
Alliance Variant		 Chr6:118955411 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G G G G A G A G A A G G G G G A G G G G G G G G
rs217929386
MGI SNP Detail
Alliance Variant		 Chr6:118955451 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 29 bp distal
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs31631690
MGI SNP Detail
Alliance Variant		 Chr6:118955475 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 53 bp distal
 SNP C/G C C C C C C C C G C G C G G C
rs30906492
MGI SNP Detail
Alliance Variant		 Chr6:118955586 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 164 bp distal
 SNP A/G A A A G A A A
rs30754331
MGI SNP Detail
Alliance Variant		 Chr6:118955635 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 213 bp distal
 SNP A/G G G G A G G G
rs31631692
MGI SNP Detail
Alliance Variant		 Chr6:118955671 Cacna1c Intron
Cacna1c Noncoding-Transcript-Variant
Gm50599 within coordinates of
Rr637560 249 bp distal
 SNP A/G A A A A A A G A G A G G A G G A G
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03/18/2025
MGI 6.24 		The Jackson Laboratory