Col2a1 Mouse SNP Summary

Mouse SNP Summary

Symbol
Name
ID

Col2a1
collagen, type II, alpha 1
MGI:88452

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SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/Lac	NZW/LacJ	PL/J	PWD/PhJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245203031 MGI SNP Detail	Chr15:97871508	Col2a1 1975 bp downstream Rr508999 within coordinates of	SNP	C/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	C	G	G	G	G
rs587204824 MGI SNP Detail	Chr15:97871536	Col2a1 1947 bp downstream Rr508999 within coordinates of	SNP	C/G	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	G	C	C	C	C
rs581531864 MGI SNP Detail	Chr15:97871541	Col2a1 1942 bp downstream Rr508999 within coordinates of	SNP	C/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T			T	T	T	T		T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs219223546 MGI SNP Detail	Chr15:97871548	Col2a1 1935 bp downstream Rr508999 within coordinates of	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs241689803 MGI SNP Detail	Chr15:97871550	Col2a1 1933 bp downstream Rr508999 within coordinates of	SNP	G/T	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T			G	G	G	G		G	G		G	G	G	G	G	G	G	G	T	G	G	G	G
rs249603889 MGI SNP Detail	Chr15:97871607	Col2a1 1876 bp downstream Rr508999 within coordinates of	SNP	C/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T			T	T	T	T		T	T		T	T	T	T	T	T	T	T	C	T	T	T	C
rs211887023 MGI SNP Detail	Chr15:97871608	Col2a1 1875 bp downstream Rr508999 within coordinates of	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs232482438 MGI SNP Detail	Chr15:97871664	Col2a1 1819 bp downstream Rr508999 within coordinates of	SNP	A/G/T	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A			G	G	G	G		G	G		G	G	G	G	G	G	G	G	T	G	G	G	G
rs251025969 MGI SNP Detail	Chr15:97871686	Col2a1 1797 bp downstream	SNP	A/G	A	A	A				A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G			A	A	A	A		A	A		A	A	A	A	A	A	A	A	G	A	A	A	G
rs222099183 MGI SNP Detail	Chr15:97871745	Col2a1 1738 bp downstream	SNP	A/C	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	A	C	C	C	C
rs234260337 MGI SNP Detail	Chr15:97871767	Col2a1 1716 bp downstream	SNP	G/T	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	T	G	G	G	G
rs586623228 MGI SNP Detail	Chr15:97871849	Col2a1 1634 bp downstream	SNP	C/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T		T	T	T	T	T	C			T	T	T	T		T	T		T	T	T	T	T	T	T	T	T	T	T	T	T
rs255617386 MGI SNP Detail	Chr15:97871900	Col2a1 1583 bp downstream	SNP	C/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T			T	T	T	T		T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs226230744 MGI SNP Detail	Chr15:97871927	Col2a1 1556 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A			G	G	G	G		G	G		G	G	G	G	G	G	G	G	G	G	G	G	G
rs245104050 MGI SNP Detail	Chr15:97871940	Col2a1 1543 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs255592610 MGI SNP Detail	Chr15:97871982	Col2a1 1501 bp downstream	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs223241548 MGI SNP Detail	Chr15:97872042	Col2a1 1441 bp downstream	SNP	A/C	A	A	A				A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A			A	A	A	A		A	A		A	A	A	A	A	A	A	A	C	A	A	A	A
rs237716198 MGI SNP Detail	Chr15:97872070	Col2a1 1413 bp downstream	SNP	A/C	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	A	C	C	C	C
rs258293899 MGI SNP Detail	Chr15:97872118	Col2a1 1365 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs227448532 MGI SNP Detail	Chr15:97872154	Col2a1 1329 bp downstream	SNP	A/G	A	A	A				A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A			A	A	A	A		A	A		A	A	A	A	A	A	A	A	G	A	A	A	A
rs239145143 MGI SNP Detail	Chr15:97872170	Col2a1 1313 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	A
rs266128678 MGI SNP Detail	Chr15:97872195	Col2a1 1288 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A			G	G	G	G		G	G		G	G	G	G	G	G	G	G	G	G	G	G	G
rs233122772 MGI SNP Detail	Chr15:97872205	Col2a1 1278 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A			G	G	G	G		G	G		G	G	G	G	G	G	G	G	G	G	G	G	G
rs36512871 MGI SNP Detail	Chr15:97872286	Col2a1 1197 bp downstream	SNP	A/G		A					A				A		A											A					A	A			A					A			A					A		G												A
rs254199854 MGI SNP Detail	Chr15:97872302	Col2a1 1181 bp downstream	SNP	C/G	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	G	C	C	C	C
SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/Lac	NZW/LacJ	PL/J	PWD/PhJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211708055 MGI SNP Detail	Chr15:97872335	Col2a1 1148 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs226256336 MGI SNP Detail	Chr15:97872348	Col2a1 1135 bp downstream	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs244745349 MGI SNP Detail	Chr15:97872350	Col2a1 1133 bp downstream	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs215738715 MGI SNP Detail	Chr15:97872376	Col2a1 1107 bp downstream	SNP	A/G	G	G	G				A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A			A	A	A	A		A	A		A	A	A	A	A	A	A	A	A	A	A	G	A
rs234248387 MGI SNP Detail	Chr15:97872398	Col2a1 1085 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs261125106 MGI SNP Detail	Chr15:97872446	Col2a1 1037 bp downstream	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	T
rs218544132 MGI SNP Detail	Chr15:97872463	Col2a1 1020 bp downstream	SNP	A/G	A	A	A				A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A			A	A	A	A		A	A		A	A	A	A	A	A	A	A	G	A	A	A	G
rs235747684 MGI SNP Detail	Chr15:97872474	Col2a1 1009 bp downstream	SNP	A/G	A	A	A				A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A			A	A	A	A		A	A		A	A	A	A	A	A	A	A	G	A	A	A	A
rs36874623 MGI SNP Detail	Chr15:97872476	Col2a1 1007 bp downstream	SNP	A/T		A					A	A			A		A																A	A			A					T			A					A		A												A
rs223451434 MGI SNP Detail	Chr15:97872555	Col2a1 928 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs237704908 MGI SNP Detail	Chr15:97872569	Col2a1 914 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G		G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A			G	G	G	G		G	G		G	G	G	G	G	G	G	G	G	G	G	G	G
rs252096320 MGI SNP Detail	Chr15:97872580	Col2a1 903 bp downstream	SNP	A/T	A	A	A				A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T			A	A	A	A		A	A		A	A	A	A	A	A	A	A	A	A	A	A	A
rs220948107 MGI SNP Detail	Chr15:97872616	Col2a1 867 bp downstream	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs239083338 MGI SNP Detail	Chr15:97872672	Col2a1 811 bp downstream	SNP	C/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	C	G	G	G	G
rs264351770 MGI SNP Detail	Chr15:97872693	Col2a1 790 bp downstream	SNP	C/T	C	C	C				C	C		C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C			C	C	C	C		C	C		T	T	T	C	T	C	C	C	C	T	T	C	C
rs233936306 MGI SNP Detail	Chr15:97872712	Col2a1 771 bp downstream	SNP	C/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	C	G	G	G	G
rs242108993 MGI SNP Detail	Chr15:97872738	Col2a1 745 bp downstream	SNP	A/G	A	A	A				A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A			A	A	A	A		A	A		A	A	A	A	A	A	A	A	G	A	A	A	A
rs264645375 MGI SNP Detail	Chr15:97872741	Col2a1 742 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	A
rs226242489 MGI SNP Detail	Chr15:97872752	Col2a1 731 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs244734536 MGI SNP Detail	Chr15:97872758	Col2a1 725 bp downstream	SNP	C/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T			T	T	T	T		T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs215678708 MGI SNP Detail	Chr15:97872767	Col2a1 716 bp downstream	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs227154079 MGI SNP Detail	Chr15:97872787	Col2a1 696 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	A	A		G	G		G	G	G	G	G	G	G	G	G	G	G	G	G
rs37590396 MGI SNP Detail	Chr15:97872805	Col2a1 678 bp downstream	SNP	C/T		C					C	C			C		C											T					C	C			C					T			C					C		C												C
rs218360212 MGI SNP Detail	Chr15:97872809	Col2a1 674 bp downstream	SNP	C/G	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	G	C	C	C	C
rs36287985 MGI SNP Detail	Chr15:97872828	Col2a1 655 bp downstream	SNP	A/G		G					G	G			G		G											G					G	G			G					G			G					G		A												G
SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/Lac	NZW/LacJ	PL/J	PWD/PhJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237473735 MGI SNP Detail	Chr15:97872956	Col2a1 527 bp downstream	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs255854191 MGI SNP Detail	Chr15:97873024	Col2a1 459 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs37701748 MGI SNP Detail	Chr15:97873037	Col2a1 446 bp downstream	SNP	A/G		A					A	A			A		A											G					A	A			A					G			A					A		G												A
rs231472069 MGI SNP Detail	Chr15:97873074	Col2a1 409 bp downstream	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs36684784 MGI SNP Detail	Chr15:97873122	Col2a1 361 bp downstream	SNP	A/G		A					A	A			A		A			A								A					A	A			A					A			A					A		G												A
rs252038110 MGI SNP Detail	Chr15:97873205	Col2a1 278 bp downstream	SNP	G/T	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	T	G	G	G	G
rs220845854 MGI SNP Detail	Chr15:97873207	Col2a1 276 bp downstream	SNP	C/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C			T	T	T	T		T	T		T	T	T	T	T	T	T	T	C	T	T	T	C
rs36772835 MGI SNP Detail	Chr15:97873216	Col2a1 267 bp downstream	SNP	C/T		C					C	C			C		C											C					C	C			C								C					C		T												C
rs36279001 MGI SNP Detail	Chr15:97873269	Col2a1 214 bp downstream	SNP	A/G		G					G	G			G		G											G					G	G			G					G			G					G		A												G
rs240462271 MGI SNP Detail	Chr15:97873326	Col2a1 157 bp downstream	SNP	A/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T			T	T	T	T		T	T		T	T	T	T	T	T	T	T	A	T	T	T	T
rs263852897 MGI SNP Detail	Chr15:97873381	Col2a1 102 bp downstream	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs36651408 MGI SNP Detail	Chr15:97873398	Col2a1 85 bp downstream	SNP	C/T		C					C	C			C		C											T					C	C			C					T			C					C														C
rs244935650 MGI SNP Detail	Chr15:97873424	Col2a1 59 bp downstream	SNP	A/C	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	C	C	C	C	C
rs36426389 MGI SNP Detail	Chr15:97873433	Col2a1 50 bp downstream	SNP	A/G		G					G	G			G		G											G					G	G			G					G			G					G		A												G
rs261475506 MGI SNP Detail	Chr15:97873444	Col2a1 39 bp downstream	SNP	C/T	C	C	C				C	C		C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C			C	C	C	C		C	C		T	T	T	C	T	C	C	C	C	T	T	C	C
rs36817232 MGI SNP Detail	Chr15:97873482	Col2a1 1 bp downstream	SNP	A/G		A					A	A			A		A											G						A			A					G			A					A		G												A
rs36871854 MGI SNP Detail Alliance Variant	Chr15:97873583	Col2a1 mRNA-UTR Col2a1 Noncoding-Transcript-Variant Tssr136190 within coordinates of	SNP	A/G		G					G	G			G		G											A					G				G					A			G					G		G												G
rs238515972 MGI SNP Detail Alliance Variant	Chr15:97873593	Col2a1 mRNA-UTR Col2a1 Noncoding-Transcript-Variant Tssr136190 within coordinates of	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs259564929 MGI SNP Detail Alliance Variant	Chr15:97874040	Col2a1 Coding-NonSynonymous Col2a1 Noncoding-Transcript-Variant Tssr136197 within coordinates of	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs227058303 MGI SNP Detail Alliance Variant	Chr15:97874118	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T	T	T	T				T	T		T	T	T	C	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	C			T	T	T	T		T	T		C	C	C	T	C	T	T	T	C	C	C	T	C
rs254442607 MGI SNP Detail Alliance Variant	Chr15:97874161	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs36417513 MGI SNP Detail Alliance Variant	Chr15:97874208	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T		C					C	C			C		C			C								C					C	C			C					C			C					C		T												C
rs265877435 MGI SNP Detail Alliance Variant	Chr15:97874393	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T			T	T	T	T		T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs229145107 MGI SNP Detail Alliance Variant	Chr15:97874394	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs253240587 MGI SNP Detail Alliance Variant	Chr15:97874405	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
SNP ID (GRCm39)	Map Position (GRCm39)	Gene & Category	Variation Type	Allele Summary (all strains)	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ	B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3<tf>/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/10J	C57BL/10SnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/Lac	NZW/LacJ	PL/J	PWD/PhJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214754284 MGI SNP Detail Alliance Variant	Chr15:97874449	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	A/G/T	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G		G	G	G	A			G	G	G	G		G	G		G	G	G	G	G	G	G	G	G	G	G	T	A
rs38226501 MGI SNP Detail Alliance Variant	Chr15:97874462	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	A/G		A					A	A			A		A																				A					G			A					A		G												A
rs246333220 MGI SNP Detail Alliance Variant	Chr15:97874473	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T			T	T	T	T		T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs215221757 MGI SNP Detail Alliance Variant	Chr15:97874516	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant Col2a1 Splice-Site	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs243147445 MGI SNP Detail Alliance Variant	Chr15:97874565	Col2a1 Coding-Synonymous Col2a1 Noncoding-Transcript-Variant Tssr136198 within coordinates of	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G		A	G	G	G	G
rs260409326 MGI SNP Detail Alliance Variant	Chr15:97874580	Col2a1 Coding-Synonymous Col2a1 Noncoding-Transcript-Variant	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C		T	C	C	C	C
rs37075552 MGI SNP Detail Alliance Variant	Chr15:97874709	Col2a1 Coding-Synonymous Col2a1 Intron Col2a1 Noncoding-Transcript-Variant Rr509000 within coordinates of	SNP	A/G		G					G	G			G		G											G					G	G			G					G			G					G		A												G
rs221342186 MGI SNP Detail Alliance Variant	Chr15:97874730	Col2a1 Coding-Synonymous Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G		A	G	G	G	G
rs38170175 MGI SNP Detail Alliance Variant	Chr15:97874748	Col2a1 Coding-Synonymous Col2a1 Intron Col2a1 Noncoding-Transcript-Variant Tssr136202 within coordinates of	SNP	G/T		G					G	G			G		G			G								T					G	G			G					T			G					G		G												G
rs249513368 MGI SNP Detail Alliance Variant	Chr15:97874782	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T			C	C	C	C		C	C		C	C	C	C	C	C	C	C	C	C	C	C
rs37132766 MGI SNP Detail Alliance Variant	Chr15:97874848	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	A/G		A					A	A					G											G					A	A			A					G			A					A		G												A
rs37472018 MGI SNP Detail Alliance Variant	Chr15:97874913	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T		C					C	C			C		C											T					C	C			C					T			C					C		C												C
rs259899528 MGI SNP Detail Alliance Variant	Chr15:97874958	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C	C	T	C	C	C	C
rs220718594 MGI SNP Detail Alliance Variant	Chr15:97875031	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs250811695 MGI SNP Detail Alliance Variant	Chr15:97875032	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	A/G	A	A	A				A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A			A	A	A	A		A	A		A	A	A	A	A	A	A	A	G	A	A	A	A
rs263901005 MGI SNP Detail Alliance Variant	Chr15:97875098	Col2a1 Coding-NonSynonymous Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T			T	T	T	T		T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs228996438 MGI SNP Detail Alliance Variant	Chr15:97875135	Col2a1 Coding-Synonymous Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T			T	T	T	T		T	T		T	T	T	T	T	T	T	T	C	T	T	T	T
rs248975623 MGI SNP Detail Alliance Variant	Chr15:97875322	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	A/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T			T	T	T	T		T	T		T	T	T	T	T	T	T	T	A	T	T	T	T
rs256587719 MGI SNP Detail Alliance Variant	Chr15:97875347	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs225604776 MGI SNP Detail Alliance Variant	Chr15:97875493	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	A/G	G	G	G				G	G		G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G			G	G	G	G		G	G		A	A	A	G	A	G	G	G	G	A	A	G	G
rs246276579 MGI SNP Detail Alliance Variant	Chr15:97875504	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T	C	C	C				C	C		C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C			C	C	C	C		C	C		C	C	C	C	C	C	C		T	C	C	C	C
rs36412302 MGI SNP Detail Alliance Variant	Chr15:97875540	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T		C					C	C			C		C			T								C					C	C			C					C			C					C		T												C
rs215587251 MGI SNP Detail Alliance Variant	Chr15:97875541	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	A/G	G	G	G				G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G			G	G	G	G		G	G		G	G	G	G	G	G	G	G	A	G	G	G	G
rs240383702 MGI SNP Detail Alliance Variant	Chr15:97875543	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	A/C	A	A	A				A	A		A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A			A	A	A	A		A	A		A	A	A	A	A	A	A		C	A	A	A	A
rs259294607 MGI SNP Detail Alliance Variant	Chr15:97875548	Col2a1 Intron Col2a1 Noncoding-Transcript-Variant	SNP	C/T	T	T	T				T	T		T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T			T	T	T	T		T	T		T	T	T	T	T	T	T		C	T	T	T	T

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Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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